Search results for "transposon"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
114	Ruochen Liu, Zhengchun Sheng, Licheng Jiao	Gene transposon based clonal selection algorithm for clustering.	GECCO	2009	DBLP DOI BibTeX RDF	clone selection algorithm, gene transposon, pbm index, clustering
83	Alcides Castro-e-Silva, Gerald Weber, Romuel F. Machado, Elizabeth F. Wanner, Renata Guerra-Sá	Identity Transposon Networks in D. melanogaster.	BSB	2008	DBLP DOI BibTeX RDF
31	Elizabeth Ferreira Gouvea Goldbarg, Marco César Goldbarg, Ligia B. Bagi	Transgenetic algorithm: a new evolutionary perspective for heuristics design.	GECCO (Companion)	2007	DBLP DOI BibTeX RDF	quorum sensing, transgenetic algorithm, transposon, horizontal gene transfer
31	James Shapiro	Thinking About Evolution in Terms of Cellular Computing.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	genome system architecture, mobile genetic elements, natural genetic engineering, retrotransposon, transposon, adaptive mutation
28	Kishore R. Sakharkar, Meena K. Sakharkar	To fuse or not to fuse.	BIBE	2007	DBLP DOI BibTeX RDF
28	Anna Sintsova, Hans-Joachim Ruscheweyh, Christopher M. Field, Lilith Feer, Bidong D. Nguyen, Benjamin Daniel, Wolf-Dietrich Hardt, Julia A. Vorholt, Shinichi Sunagawa	mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations.	Bioinform.	2024	DBLP DOI BibTeX RDF
28	Fatema Shormin, Noushin Ghaffari, Catherine M. Mageeney, Kelly Porter Williams	Comparative Computational Approach for Evaluating Transposon Detection in Genomic Data.	PEARC	2023	DBLP DOI BibTeX RDF
28	Vishal Kumar Sarsani, Berent Aldikacti, Shai He, Rilee Zeinert, Peter Chien, Patrick Flaherty	Model-based identification of conditionally-essential genes from transposon-insertion sequencing data.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
28	Anna Abramova, Adriana Osinska, Haveela Kunche, Emil Burman, Johan Bengtsson-Palme	CAFE: a software suite for analysis of paired-sample transposon insertion sequencing data.	Bioinform.	2021	DBLP DOI BibTeX RDF
28	Andrew J. Page, Sarah Bastkowski, Muhammad Yasir, A. Keith Turner, Thanh Le Viet, George M. Savva, Mark A. Webber, Ian G. Charles	AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
28	Sebastian Uhrig, Holger Klein	PingPongPro: a tool for the detection of piRNA-mediated transposon-silencing in small RNA-Seq data.	Bioinform.	2019	DBLP DOI BibTeX RDF
28	Xinxing Yan, Zhongmeng Zhao, Xuanping Zhang, Jiayin Wang	A Semi-Supervised Framework for Detecting and Classifying Human Transposon LINE-1 Insertions.	AIM	2019	DBLP DOI BibTeX RDF
28	Anna Solovyeva, Ivan Levakin, Olga I. Podgornaya	From clonal diversity to transposon derived long non-coding RNA in trematode Himasthla elongata parthenogenetic generations.	BIBM	2019	DBLP DOI BibTeX RDF
28	Angus Wu, Zhen-Lun Yang	An Elitist Transposon Quantum-Based Particle Swarm Optimization Algorithm for Economic Dispatch Problems.	Complex.	2018	DBLP DOI BibTeX RDF
28	Fei Han 0001, Yu-Wen-Tian Sun, Qing-Hua Ling	An Improved Multiobjective Quantum-Behaved Particle Swarm Optimization Based on Double Search Strategy and Circular Transposon Mechanism.	Complex.	2018	DBLP DOI BibTeX RDF
28	Lili Zhao, Mark T. Anderson, Weisheng Wu, Harry L. T. Mobley, Michael A. Bachman	TnseqDiff: identification of conditionally essential genes in transposon sequencing studies.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
28	Dingfang Li, Longqiang Luo, Wen Zhang 0008, Feng Liu, Fei Luo 0004	A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
28	Lars Barquist, Matthew Mayho, Carla A. Cummins, Amy K. Cain, Christine J. Boinett, Andrew J. Page, Gemma C. Langridge, Michael A. Quail, Jacqueline A. Keane, Julian Parkhill	The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.	Bioinform.	2016	DBLP DOI BibTeX RDF
28	Michael A. DeJesus, Thomas R. Ioerger	Normalization of transposon-mutant library sequencing datasets to improve identification of conditionally essential genes.	J. Bioinform. Comput. Biol.	2016	DBLP DOI BibTeX RDF
28	Michael A. DeJesus, Thomas R. Ioerger	Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential Genes.	IEEE ACM Trans. Comput. Biol. Bioinform.	2015	DBLP DOI BibTeX RDF
28	Chuan Jiang, Chao Chen, Ziyue Huang, Renyi Liu, Jerome Verdier	ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
28	Bo W. Han, Wei Wang, Phillip D. Zamore, Zhiping Weng	piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.	Bioinform.	2015	DBLP DOI BibTeX RDF
28	Mariko Nakagome, Elena Solovieva, Akira Takahashi, Hiroshi Yasue, Hirohiko Hirochika, Akio Miyao	Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
28	Kai Wang, Chun Liang, Jinding Liu, Huamei Xiao, Shuiqing Huang, Jianhua Xu, Fei Li	Prediction of piRNAs using transposon interaction and a support vector machine.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
28	Hong Yang, Elias W. Krumholz, Evan D. Brutinel, Nagendra P. Palani, Michael J. Sadowsky, Andrew M. Odlyzko, Jeffrey A. Gralnick, Igor G. L. Libourel	Genome-Scale Metabolic Network Validation of Shewanella oneidensis Using Transposon Insertion Frequency Analysis.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
28	Michael A. DeJesus, Thomas R. Ioerger	A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
28	Michael A. DeJesus, Yanjia J. Zhang, Christopher M. Sassetti, Eric J. Rubin, James C. Sacchettini, Thomas R. Ioerger	Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries.	Bioinform.	2013	DBLP DOI BibTeX RDF
28	Michael A. DeJesus, Thomas R. Ioerger	Improving discrimination of essential genes by modeling local insertion frequencies in transposon mutagenesis data.	BCB	2013	DBLP DOI BibTeX RDF
28	Ruochen Liu, Licheng Jiao, Xiangrong Zhang, Yangyang Li 0001	Gene transposon based clone selection algorithm for automatic clustering.	Inf. Sci.	2012	DBLP DOI BibTeX RDF
28	Aaron L. Sarver, Jesse Erdman, Timothy K. Starr, David A. Largaespada, Kevin A. T. Silverstein	TAPDANCE: An automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
28	Olga Shevchuk, Louisa Roselius, Gabriele Günther, Johannes Klein, Dieter Jahn, Michael Steinert, Richard Münch	InFiRe - a novel computational method for the identification of insertion sites in transposon mutagenized bacterial genomes.	Bioinform.	2012	DBLP DOI BibTeX RDF
28	Anton Crombach, Paulien Hogeweg	Is RNA-dependent RNA polymerase essential for transposon control?	BMC Syst. Biol.	2011	DBLP DOI BibTeX RDF
28	Abanish Singh, Umeshkumar Keswani, David Levine, Cédric Feschotte, Nikola Stojanovic	An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes.	Int. J. Bioinform. Res. Appl.	2010	DBLP DOI BibTeX RDF
28	Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp	Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.	Bioinform.	2010	DBLP DOI BibTeX RDF
28	Yujia Wang, Yunfeng Xue, Liping Zhang	A Hybrid PSO Algorithm with Transposon for Multiobjective Optimization.	ICIC (3)	2010	DBLP DOI BibTeX RDF
28	Kevin Roberg-Perez, Corey M. Carlson, David A. Largaespada	MTID: a database of Sleeping Beauty transposon insertions in mice.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
28	Alexander V. Spirov, A. S. Kadyrov	Transposon Element Technique Applied to GA-Based John Muir's Trail Test.	HPCN	1998	DBLP DOI BibTeX RDF
28	Eugene Veklerov, Christopher H. Martin, Edward H. Theil	TRAMP: a software package for generating transposon maps.	Comput. Appl. Biosci.	1995	DBLP DOI BibTeX RDF
28	K. Eric Paulson, A. Gregory Matera, Niren Deka, Carl W. Schmid	Transcription of a human transposon-like sequence is usually directed by other promoters.	Nucleic Acids Res.	1987	DBLP DOI BibTeX RDF
28	David R. Hyde, Chen-Pei D. Tu	Insertion sites and the terminal nucleotide sequences of the Tn4 transposon.	Nucleic Acids Res.	1982	DBLP DOI BibTeX RDF