Search results for "BIRD"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Luís Pedro Coelho, Robert F. Murphy	Identifying Subcellular Locations from Images of Unknown Resolution.	BIRD	2008	DBLP DOI BibTeX RDF
1	Clara Pizzuti, Simona E. Rombo	Multi-functional Protein Clustering in PPI Networks .	BIRD	2008	DBLP DOI BibTeX RDF
1	Tomás Flouri, Costas S. Iliopoulos, Mohammad Sohel Rahman, Ladislav Vagner, Michal Vorácek	Indexing Factors in DNA/RNA Sequences.	BIRD	2008	DBLP DOI BibTeX RDF
1	Roger Marshall	Gene Machine© - A Hardware/Software Platform for Analyzing Genome Data.	BIRD	2008	DBLP DOI BibTeX RDF	Genetic sequences alignment, hidden Markov model, computer architecture
1	Elena Mocanu, Paul E. Sterian	Acquisition and Algorithms for Fluorescence Applications.	BIRD	2008	DBLP DOI BibTeX RDF
1	Timothy Lee, Rahul Singh	Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive Methods and Mass Spectrometry-Based Algorithmic Approach.	BIRD	2008	DBLP DOI BibTeX RDF
1	Petri Kalsi, Hannu Peltola, Jorma Tarhio	Comparison of Exact String Matching Algorithms for Biological Sequences.	BIRD	2008	DBLP DOI BibTeX RDF
1	Ramkishore Bhattacharyya, Balaram Bhattacharyya	Gene Expression Mining for Cohesive Pattern Discovery.	BIRD	2008	DBLP DOI BibTeX RDF	microarray mining, Association rule, cohesion, gene cluster, direct interaction
1	Mihail Halachev, Nematollaah Shiri	Fast Structured Motif Search in DNA Sequences.	BIRD	2008	DBLP DOI BibTeX RDF	performance, suffix tree, DNA sequences, structured motif
1	Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta	A Robust Class of Stable Proteins in the 2D HPC Model.	BIRD	2008	DBLP DOI BibTeX RDF
1	Richard J. B. Dobson, Patricia B. Munroe, Charles A. Mein, Mark J. Caulfield, Mansoor A. S. Saqi	Combining Protein-Protein Interaction (PPI) Network and Sequence Attributes for Predicting Hypertension Related Proteins.	BIRD	2008	DBLP DOI BibTeX RDF
1	Richard Carl Van der Wath, Elizabeth van der Wath, Antonio Carapelli, Francesco Nardi, Francesco Frati, Luciano Milanesi, Pietro Liò	Bayesian Phylogeny on Grid.	BIRD	2008	DBLP DOI BibTeX RDF
1	Maria Federico, Nadia Pisanti	Suffix Tree Characterization of Maximal Motifs in Biological Sequences.	BIRD	2008	DBLP DOI BibTeX RDF	Maximal Motifs, Suffix trees, Biological Sequences
1	Nguyen Phuong, Hoang Tuan	Clustering in a Fixed Manifold to Detect Groups of Genes with Similar Expression Patterns.	BIRD	2008	DBLP DOI BibTeX RDF	normalized EM, clustering, manifold, microarray data
1	Pietro Liò, Matteo Brilli, Renato Fani	Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing Proteins Case Studies.	BIRD	2008	DBLP DOI BibTeX RDF
1	Roziah Kambol, M. Faris Abtholuddin	Genome Structure and Characterisation of an Endogenous Retrovirus from the Zebrafish Genome Project Database.	BIRD	2008	DBLP DOI BibTeX RDF	endogenous retrovirus, reverse transcriptase, piscine, genome
1	Mourad Elloumi, Ahmed Mokaddem	An Algorithm for Multiple and Global Alignments.	BIRD	2008	DBLP DOI BibTeX RDF	multiple and global alignments, common subsequence, algorithms, complexities, Strings, divide-and-conquer strategy
1	Chen Na Lian, Mihail Halachev, Nematollaah Shiri	Searching for Supermaximal Repeats in Large DNA Sequences.	BIRD	2008	DBLP DOI BibTeX RDF	supermaximal repeats, performance, suffix tree, DNA sequences
1	Irina Codita, Stefan Pusca	PTF Model for Evaluating the Relationships between the VAC and Antimicrobial Resistance in Human Communities.	BIRD	2008	DBLP DOI BibTeX RDF
1	Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota 0001, Eugenia Furletova, Ewa Szczurek, Gregory Kucherov	Efficient Seeding Techniques for Protein Similarity Search.	BIRD	2008	DBLP DOI BibTeX RDF
1	Valeria Fionda, Luigi Palopoli 0001, Simona Panni, Simona E. Rombo	Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach.	BIRD	2008	DBLP DOI BibTeX RDF
1	Kevin Kontos, Gianluca Bontempi	Nested q-Partial Graphs for Genetic Network Inference from "Small n, Large p" Microarray Data.	BIRD	2008	DBLP DOI BibTeX RDF
1	Emanuel Schwarz, F. Markus Leweke, Sabine Bahn, Pietro Liò	Combining Molecular and Physiological Data of Complex Disorders.	BIRD	2008	DBLP DOI BibTeX RDF
1	Stefan Pusca, Theodora Toma	Computational Model for the Study of the Fractal Parameters Characteristic for the Surface of Titanium Dental Implants.	BIRD	2008	DBLP DOI BibTeX RDF
1	José Crispín Hernández Hernández, Béatrice Duval, Jin-Kao Hao	SVM-Based Local Search for Gene Selection and Classification of Microarray Data.	BIRD	2008	DBLP DOI BibTeX RDF	Microarray gene expression, Support vector machines, Feature selection, Local search
1	Valerica Ninulescu, Vladua-Bogdan Nicolae, Andreea Sterian	Quantum Well Lasers for Medical Industry.	BIRD	2008	DBLP DOI BibTeX RDF	Multiple quantum well laser, optical stimulation, nonlinear dynamics
1	Mourad Elloumi, Josef Küng, Michal Linial, Robert F. Murphy, Kristan Schneider, Cristian Toma (eds.)	Bioinformatics Research and Development, Second International Conference, BIRD 2008, Vienna, Austria, July 7-9, 2008, Proceedings	BIRD	2008	DBLP BibTeX RDF
1	Esa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen	A Computational Method for Reconstructing Gapless Metabolic Networks.	BIRD	2008	DBLP DOI BibTeX RDF
1	Bin Liu 0014, Lei Lin 0001, Xiaolong Wang 0001, Qiwen Dong, Xuan Wang 0002	A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles.	BIRD	2008	DBLP DOI BibTeX RDF	remote homology, N-nary profiles, chi-square algorithm, latent semantic analysis
1	Carlo Cattani	Complex Representation of DNA Sequences.	BIRD	2008	DBLP DOI BibTeX RDF	short Haar wavelet transfor, Wavelets, wavelet coefficients
1	Pavlos Antoniou, Costas S. Iliopoulos, Inuka Jayasekera, M. Sohel Rahman	Implementation of a Swap Matching Algorithm Using a Graph Theoretic Model.	BIRD	2008	DBLP DOI BibTeX RDF
1	Dominic Mainz, Ingo Paulsen, Indra Mainz, Katrin Weller, Jochen Kohl, Arndt von Haeseler	Knowledge Acquisition Focused Cooperative Development of Bio-ontologies - A Case Study with BIO2Me.	BIRD	2008	DBLP DOI BibTeX RDF
1	Ernst Althaus, Stefan Canzar	LASA: A Tool for Non-heuristic Alignment of Multiple Sequences.	BIRD	2008	DBLP DOI BibTeX RDF
1	Hatem Tahri, Mourad Elloumi	A New Approximation Algorithm for the Minimum Fragment Removal Problem.	BIRD	2008	DBLP DOI BibTeX RDF	haplotype assembly, minimum fragment removal, vertex bipartization, algorithms, complexities, Graphs
1	M. A. Lijo Anto, G. Gopakumar 0001, Achuthsankar S. Nair, Indira Ghosh	GENFOCS - A Comparative Tool on Gene Finding with Sensitivity and Specificity.	BIRD	2008	DBLP DOI BibTeX RDF	Comparative analysis of gene predictions, sensitivity and speci-ficity
1	Jano I. van Hemert, Richard A. Baldock	Matching Spatial Regions with Combinations of Interacting Gene Expression Patterns.	BIRD	2008	DBLP DOI BibTeX RDF	gene expression patterns, in situ hybridization, spatio-temporal atlases, evolutionary algorithms
1	Paul E. Sterian, Octavian Marin, Valerica Ninulescu	Control of the Lasers Dynamics by Pumping Modulation for Biophotonics Applications.	BIRD	2008	DBLP DOI BibTeX RDF	Optical fiber laser, optical stimulation, nonlinear dynamics
1	Christian Martin 0002, Tim W. Nattkemper	A Tree Index to Support Clustering Based Exploratory Data Analysis.	BIRD	2008	DBLP DOI BibTeX RDF
1	Ben Dalziel, Hui Yang 0002, Rahul Singh, Matthew Gormley, Susan Fisher	XMAS: An Experiential Approach for Visualization, Analysis, and Exploration of Time Series Microarray Data.	BIRD	2008	DBLP DOI BibTeX RDF
1	Xiangchao Gan, Leonidas Kapsokalivas, Andreas Alexander Albrecht, Kathleen Steinhöfel	A Symmetry-Free Subspace for Ab initioProtein Folding Simulations.	BIRD	2008	DBLP DOI BibTeX RDF
1	Mohammed Al-Shalalfa, Reda Alhajj	Motif Location Prediction by Divide and Conquer.	BIRD	2008	DBLP DOI BibTeX RDF	conserved motifs, divide and conquer, gene expression data, sequence analysis, motif discovery
1	Ingo H. C. Wassink, Han Rauwerda, Paul E. van der Vet, Timo M. Breit, Anton Nijholt	E-BioFlow: Different Perspectives on Scientific Workflows.	BIRD	2008	DBLP DOI BibTeX RDF
1	Trandafir Moisa, Cristian Morarescu	VEMS-TM - A Management Infrastructure.	BIRD	2008	DBLP DOI BibTeX RDF
1	Carlo Cattani, Massimo Scalia	Wavelet Analysis of Impulses in Axon Physiology.	BIRD	2008	DBLP DOI BibTeX RDF	Short Haar Wavelet Transform, Competition model, Haar wavelets, multidimensional analysis
1	Hans Zantema, Stefan Wagemans, Dragan Bosnacki	Finding Frequent Subgraphs in Biological Networks Via Maximal Item Sets.	BIRD	2008	DBLP DOI BibTeX RDF
1	Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel 0002, Peter F. Stadler, Ivo L. Hofacker	Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics.	BIRD	2008	DBLP DOI BibTeX RDF
1	Leonidas Kapsokalivas, Xiangchao Gan, Andreas Alexander Albrecht, Kathleen Steinhöfel	Two Local Search Methods for Protein Folding Simulation in the HP and the MJ Lattice Models.	BIRD	2008	DBLP DOI BibTeX RDF
1	Fei Xia, Yong Dou, Jiaqing Xu	Families of FPGA-Based Accelerators for BLAST Algorithm with Multi-seeds Detection and Parallel Extension.	BIRD	2008	DBLP DOI BibTeX RDF
1	Veselka Boeva, Elena Tsiporkova	A Novel Adaptive Multiple Imputation Algorithm.	BIRD	2008	DBLP DOI BibTeX RDF
1	Natalja Kurbatova, Juris Viksna	Exploration of Evolutionary Relations between Protein Structures.	BIRD	2008	DBLP DOI BibTeX RDF
1	Fabrice Camous, Stephen Blott, Alan F. Smeaton	Ontology-Based MEDLINE Document Classification.	BIRD	2007	DBLP DOI BibTeX RDF
1	Lars Kaderali	Individualized Predictions of Survival Time Distributions from Gene Expression Data Using a Bayesian MCMC Approach.	BIRD	2007	DBLP DOI BibTeX RDF
1	Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann	Annotation of LC/ESI-MS Mass Signals.	BIRD	2007	DBLP DOI BibTeX RDF
1	Rafael Navajas-Pérez, Manuel Ruiz Rejón, Manuel A. Garrido-Ramos, José Luis Aznarte, Cristina Rubio-Escudero	satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae).	BIRD	2007	DBLP DOI BibTeX RDF
1	Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen 0001, Yu-Yen Ou, Yen-Jen Oyang	Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction.	BIRD	2007	DBLP DOI BibTeX RDF	protein disorder prediction, Radial Basis Function Network, secondary structure
1	Jehan Zeb Shah, Naomie Salim	A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive Chemical Compounds.	BIRD	2007	DBLP DOI BibTeX RDF	chemical information systems, bioinformatics, cluster analysis, fuzzy c-means, chemoinformatics
1	Da Jiang, Shuigeng Zhou, Jihong Guan	A Novel Method for Flux Distribution Computation in Metabolic Networks.	BIRD	2007	DBLP DOI BibTeX RDF
1	Rabie Saidi, Mondher Maddouri, Engelbert Mephu Nguifo	Biological Sequences Encoding for Supervised Classification.	BIRD	2007	DBLP DOI BibTeX RDF
1	Domenico Marra, Paolo Romano 0001	Integrating Mutations Data of the TP53 Human Gene in the Bioinformatics Network Environment.	BIRD	2007	DBLP DOI BibTeX RDF	molecular biology databases, workflow enactment portal, Web Services, XML, data integration, bioinformatics, workflow management systems
1	James Lu, Heinz W. Engl, Rainer Machné, Peter Schuster 0002	Inverse Bifurcation Analysis of a Model for the Mammalian G 1/ S Regulatory Module.	BIRD	2007	DBLP DOI BibTeX RDF
1	Majid Beigi, Andreas Zell	Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data.	BIRD	2007	DBLP DOI BibTeX RDF
1	Nicole Radde, Lars Kaderali	Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data.	BIRD	2007	DBLP DOI BibTeX RDF	Bayesian regularization, Saccharomyces cerevisiae, gene regulatory network, ordinary differential equations, network inference, cell cycle
1	Xiang Chen, Robert F. Murphy	Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions.	BIRD	2007	DBLP DOI BibTeX RDF	Location Proteomics, Pattern Recognition
1	Jano I. van Hemert, Richard A. Baldock	Mining Spatial Gene Expression Data for Association Rules.	BIRD	2007	DBLP DOI BibTeX RDF	gene expression patterns, in situ hybridization, spatio-temporal atlases, association rules
1	Sepp Hochreiter, Roland Wagner (eds.)	Bioinformatics Research and Development, First International Conference, BIRD 2007, Berlin, Germany, March 12-14, 2007, Proceedings	BIRD	2007	DBLP DOI BibTeX RDF
1	Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Björn Olsson, Olof Olsson	Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets.	BIRD	2007	DBLP DOI BibTeX RDF
1	Christelle Melo de Lima, Christian Gautier	A Markovian Approach for the Segmentation of Chimpanzee Genome.	BIRD	2007	DBLP DOI BibTeX RDF	isochore modelling, Hidden Markov model, DNA sequence
1	Susan Jones, Yoichi Mukarami	Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server.	BIRD	2007	DBLP DOI BibTeX RDF	homodimer, acessible surface area, prediction, protein-protein interaction, surface patch
1	Piyarat Nimmanpipug, Vannajan Sanghiran Lee, Jeerayut Chaijaruwanich, Sukon Prasitwattanaseree, Patrinee Traisathit	Structural Screening of HIV-1 Protease/Inhibitor Docking by Non-parametric Binomial Distribution Test.	BIRD	2007	DBLP DOI BibTeX RDF	HIV-1 protease, Binomial Distribution Test, Saquinavir, 3-Oxotirucalla-7, 24-Dien-21-Oic Acid, Docking
1	Qiwen Dong, Lei Lin 0001, Xiaolong Wang 0001	Protein Remote Homology Detection Based on Binary Profiles.	BIRD	2007	DBLP DOI BibTeX RDF	remote homology detection, binary profile, latent semantic analysis
1	Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht	Stochastic Protein Folding Simulation in the d-Dimensional HP-Model.	BIRD	2007	DBLP DOI BibTeX RDF
1	Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato	Stem Kernels for RNA Sequence Analyses.	BIRD	2007	DBLP DOI BibTeX RDF	stem kernel, SVM, secondary structure, RNA, string kernel
1	Elena Tsiporkova, Veselka Boeva	Modelling and Simulation of the Genetic Phenomena of Additivity and Dominance via Gene Networks of Parallel Aggregation Processes.	BIRD	2007	DBLP DOI BibTeX RDF
1	Ji Won Yoon, Simon J. Godsill, ChulHun Kang, Tae-Seong Kim 0001	Bayesian Inference for 2D Gel Electrophoresis Image Analysis.	BIRD	2007	DBLP DOI BibTeX RDF
1	Patrick E. Meyer 0001, Kevin Kontos, Gianluca Bontempi	Biological Network Inference Using Redundancy Analysis.	BIRD	2007	DBLP DOI BibTeX RDF
1	Simon W. Ginzinger, Thomas Gräupl, Volker Heun	SimShiftDB: Chemical-Shift-Based Homology Modeling.	BIRD	2007	DBLP DOI BibTeX RDF
1	Alexander Hinneburg, Andrea Porzel, Karina Wolfram	An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra.	BIRD	2007	DBLP DOI BibTeX RDF
1	Brijnesh J. Jain, Michael Lappe	Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem.	BIRD	2007	DBLP DOI BibTeX RDF
1	Mihail Halachev, Nematollaah Shiri, Anand Thamildurai	Efficient and Scalable Indexing Techniques for Biological Sequence Data.	BIRD	2007	DBLP DOI BibTeX RDF	Indexing, Sequences, Suffix Trees, Biological Databases
1	Judit Kumuthini, Lionel Jouffe, Conrad Bessant	A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data.	BIRD	2007	DBLP DOI BibTeX RDF	Taboo search and knowledge extraction, Bayesian belief networks, Gene regulatory networks
1	Matthias Scholz	Analysing Periodic Phenomena by Circular PCA.	BIRD	2007	DBLP DOI BibTeX RDF	nonlinear PCA, Plasmodium falciparum, neural networks, gene expression, nonlinear dimensionality reduction
1	Cinzia Pizzi, Pasi Rastas, Esko Ukkonen	Fast Search Algorithms for Position Specific Scoring Matrices.	BIRD	2007	DBLP DOI BibTeX RDF
1	Arno Fritsch, Katja Ickstadt	Comparing Logic Regression Based Methods for Identifying SNP Interactions.	BIRD	2007	DBLP DOI BibTeX RDF
1	Shu-Yun Le, Jih-Hsiang Chen	Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences.	BIRD	2007	DBLP DOI BibTeX RDF	well-ordered RNA structure, microRNA stem-loops, dynamic programming, statistical inference
1	Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh	Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models.	BIRD	2007	DBLP DOI BibTeX RDF	coiled-coil domains, Hidden Markov models, Protein structure prediction
1	Zelmina Lubovac, David Corne, Jonas Gamalielsson, Björn Olsson	Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity.	BIRD	2007	DBLP DOI BibTeX RDF	SWEMODE, interconnectivity, systems biology, Gene Ontology, functional modules
1	Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils	Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei.	BIRD	2007	DBLP DOI BibTeX RDF	3D genome structure, chromatin folding, fluorescent in situ hybridization (FISH), confocal laser scanning microscopy (CLSM), finite point sampling, confined random point distribution, Monte-Carlo simulation, stochastical analysis

Publications at "BIRD"( http://dblp.L3S.de/Venues/BIRD )