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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Felix M. Weidner, Nensi Ikonomi, Silke D. Werle, Julian D. Schwab, Hans A. Kestler |
GatekeepR: an R Shiny application for the identification of nodes with high dynamic impact in Boolean networks.  |
Bioinform.  |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yue Zhuo, Heng Du, Chenguang Diao, Weining Li, Lei Zhou, Li Jiang, Jicai Jiang, Jianfeng Liu |
MAGE: metafounders-assisted genomic estimation of breeding value, a novel additive-dominance single-step model in crossbreeding systems. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Melpomeni Kasapi, Kexin Xu, Timothy M. D. Ebbels, Declan P. O'Regan, James S. Ware, Joram M. Posma |
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zsolt Balázs, Todor Gitchev, Ivna Ivankovic, Michael Krauthammer |
Fragmentstein - facilitating data reuse for cell-free DNA fragment analysis. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Pinglu Zhang, Huan Liu, Yanming Wei, Yixiao Zhai, Qinzhong Tian, Quan Zou 0001 |
FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Rui Cao, Evan Olawsky, Edward McFowland, Erin Marcotte, Logan Spector, Tianzhong Yang |
Subset scanning for multi-trait analysis using GWAS summary statistics. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jose L. Figueroa III, Eliza Dhungel, Madeline Bellanger, Cory R. Brouwer, Richard Allen White III |
MetaCerberus: distributed highly parallelized HMM-based processing for robust functional annotation across the tree of life. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaoshu Zhu, Shuang Meng, Gaoshi Li, Jian-Xin Wang 0001, Xiaoqing Peng |
AGImpute: imputation of scRNA-seq data based on a hybrid GAN with dropouts identification. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Alex Morehead, Jianlin Cheng |
Geometry-complete perceptron networks for 3D molecular graphs. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Tareian A. Cazares, Richard E. Higgs, Jibo Wang, Hatice Gulcin Ozer |
SeedMatchR: identify off-target effects mediated by siRNA seed regions in RNA-seq experiments. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Bjarne Daenekas, Eilís Pérez, Fabio Boniolo, Sabina Stefan, Salvatore Benfatto, Martin Sill, Dominik Sturm, David T. W. Jones, David Capper, Marc Zapatka, Volker Hovestadt |
Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and mice. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Kuan Xie, Yuying Hou, Xionghui Zhou |
Deep centroid: a general deep cascade classifier for biomedical omics data classification. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhengyang Guo, Yang Wang, Guangshuo Ou |
Utilizing the scale-invariant feature transform algorithm to align distance matrices facilitates systematic protein structure comparison. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Oliver Cheng, Min Hao Ling, Changqing Wang, Shuyi Wu, Matthew E. Ritchie, Jonathan Göke, Noorul Amin, Nadia M. Davidson |
Flexiplex: a versatile demultiplexer and search tool for omics data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Chenglin Yin, Ruheng Wang, Jianbo Qiao, Hua Shi, Hongliang Duan, Xinbo Jiang, Saisai Teng, Leyi Wei |
NanoCon: contrastive learning-based deep hybrid network for nanopore methylation detection. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Ioan Ieremie, Rob M. Ewing, Mahesan Niranjan |
Protein language models meet reduced amino acid alphabets. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiangxin Zhan, Yanbin Yin, Han Zhang 0017 |
BERMAD: batch effect removal for single-cell RNA-seq data using a multi-layer adaptation autoencoder with dual-channel framework. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Elya Wygoda, Gil Loewenthal, Asher Moshe, Michael Alburquerque, Itay Mayrose, Tal Pupko |
Statistical framework to determine indel-length distribution. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jaroslaw Chilimoniuk, Krystyna Grzesiak, Jakub Kala, Dominik Nowakowski, Adam Kretowski, Rafal Kolenda, Michal Ciborowski, Michal Burdukiewicz |
imputomics: web server and R package for missing values imputation in metabolomics data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Diogo A. C. Narciso, Ana Pereira, Nuno O. Dias, Manuel Monteiro, Luis F. Melo, Fernando Gomes Martins |
3D Optical Coherence Tomography image processing in BISCAP: characterization of biofilm structure and properties. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Arik Ermshaus, Michael Piechotta, Gina Rüter, Ulrich Keilholz, Ulf Leser, Manuela Benary |
preon: Fast and accurate entity normalization for drug names and cancer types in precision oncology. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Philippe Charron, Mingsong Kang |
VariantDetective: an accurate all-in-one pipeline for detecting consensus bacterial SNPs and SVs. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Qiao Jin 0001, Yifan Yang, Qingyu Chen 0001, Zhiyong Lu |
GeneGPT: augmenting large language models with domain tools for improved access to biomedical information. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Kemal Demirtas, Burak Erman, Türkan Haliloglu |
Dynamic correlations: exact and approximate methods for mutual information. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Peiying Cai, Mark D. Robinson, Simone Tiberi |
DESpace: spatially variable gene detection via differential expression testing of spatial clusters. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xuejiao Wang, Tingfang Wu, Yelu Jiang, Taoning Chen, Deng Pan, Zhi Jin, Jingxin Xie, Lijun Quan, Qiang Lyu |
RPEMHC: improved prediction of MHC-peptide binding affinity by a deep learning approach based on residue-residue pair encoding. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Haoliang Xue, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessiere, Daniel Gautheret |
KaMRaT: a C++ toolkit for k-mer count matrix dimension reduction. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zongyang Du, Zhenling Peng, Jianyi Yang |
RNA threading with secondary structure and sequence profile. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xin Liu, Jieni Hu, Jie Zheng 0002 |
SL-Miner: a web server for mining evidence and prioritization of cancer-specific synthetic lethality. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | T. J. Sego |
SimService: a lightweight library for building simulation services in Python. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Karthik Gangavarapu, Xiang Ji, Guy Baele, Mathieu Fourment, Philippe Lemey, Frederick A. Matsen IV, Marc A. Suchard |
Many-core algorithms for high-dimensional gradients on phylogenetic trees. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristofer Sandås, Jacob Lewerentz, Edvin Karlsson, Linda Karlsson, David Sundell, Kotryna Simonyté-Sjödin, Andreas Sjödin |
Nanometa Live: a user-friendly application for real-time metagenomic data analysis and pathogen identification. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, Aleksandra A. Galitsyna, Anton Goloborodko, Maxim Imakaev, Sergey Venev |
Bioframe: operations on genomic intervals in Pandas dataframes. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Ji, Robert Aboukhalil, Niema Moshiri |
ViralWasm: a client-side user-friendly web application suite for viral genomics. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Diego Mañanes, Inés Rivero-García, Carlos Relaño, Miguel Torres, David Sancho, Daniel Jimenez-Carretero, Carlos Torroja Fungairino, Fátima Sánchez-Cabo |
SpatialDDLS: an R package to deconvolute spatial transcriptomics data using neural networks. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Ding Wang, Junru Jin, Zhongshen Li, Yu Wang, Mushuang Fan, Sirui Liang, Ran Su, Leyi Wei |
StructuralDPPIV: a novel deep learning model based on atom structure for predicting dipeptidyl peptidase-IV inhibitory peptides. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jue Yang, Weiwen Wang, Xiwen Zhang |
scSemiGCN: boosting cell-type annotation from noise-resistant graph neural networks with extremely limited supervision. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Parsa Ghadermazi, Siu Hung Joshua Chan |
Microbial interactions from a new perspective: reinforcement learning reveals new insights into microbiome evolution. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Niek van Hilten, Nino Verwei, Jeroen Methorst, Carsten Nase, Andrius Bernatavicius, Herre Jelger Risselada |
PMIpred: a physics-informed web server for quantitative protein-membrane interaction prediction. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Ping Xuan, Jing Gu, Hui Cui 0002, Shuai Wang, Toshiya Nakaguchi, Cheng Liu, Tiangang Zhang |
Multi-scale topology and position feature learning and relationship-aware graph reasoning for prediction of drug-related microbes. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Emese I Végh, Katerina Douka |
SpecieScan: semi-automated taxonomic identification of bone collagen peptides from MALDI-ToF-MS. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Aditi Shenoy, Yogesh Kalakoti, Durai Sundar, Arne Elofsson |
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Wang, Marc Horlacher, Lixin Cheng, Ole Winther |
DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Hamza Biyuzan, Mohamed-Akram Masrour, Lucas Grandmougin, Frédéric Payan, Dominique Douguet |
SENSAAS-Flex: a joint optimization approach for aligning 3D shapes and exploring the molecular conformation space. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Junchi Ma, Xiaoyu Zhao, Enfeng Qi, Renmin Han, Ting Yu, Guojun Li |
Highly efficient clustering of long-read transcriptomic data with GeLuster. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Bogeum Seo, Dohee Lee, Heungjin Jeon, Junhyoung Ha, SeungBeum Suh |
MotGen: a closed-loop bacterial motility control framework using generative adversarial networks. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Lorenzo Pantolini, Gabriel Studer, Joana Pereira, Janani Durairaj, Gerardo Tauriello, Torsten Schwede |
Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaoyu Guan, Wei Shao 0005, Daoqiang Zhang |
T-S2Inet: Transformer-based sequence-to-image network for accurate nanopore sequence recognition. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Timothy G. Vaughan |
ReMASTER: improved phylodynamic simulation for BEAST 2.7. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Juanru Guo, Wenjin Zhang, Xuhua Chen, Allen Yen, Lucy Chen, Christian A Shively, Daofeng Li, Ting Wang, Joseph D. Dougherty, Robi D. Mitra |
Pycallingcards: an integrated environment for visualizing, analyzing, and interpreting Calling Cards data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: OncoThreads: visualization of large-scale longitudinal cancer molecular data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Xue, Bingyi Wang, Hongchao Ji, Weihua Li 0006 |
RT-Transformer: retention time prediction for metabolite annotation to assist in metabolite identification. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Guillermo Dufort y Álvarez, Martí Xargay-Ferrer, Alba Pagès-Zamora, Idoia Ochoa |
EMVC-2: an efficient single-nucleotide variant caller based on expectation maximization. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Seungjun Ahn, Somnath Datta |
SOHPIE: statistical approach via pseudo-value information and estimation for differential network analysis of microbiome data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Milind Misra, Jeffy Jeffy, Charis Liao, Stephanie Pickthorn, Kshitij Wagh, Alon Herschhorn |
HIResist: a database of HIV-1 resistance to broadly neutralizing antibodies. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | David Koslicki, Stephen White, Chunyu Ma, Alexei Novikov |
YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Kexin Shi, Yuanpeng Xiong, Yu Wang, Yifan Deng, Wenjia Wang, Bingyi Jing, Xin Gao 0001 |
PractiCPP: a deep learning approach tailored for extremely imbalanced datasets in cell-penetrating peptide prediction. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: GTExVisualizer: a web platform for supporting ageing studies. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruochi Zhang, Chao Wu, Qian Yang, Chang Liu, Yan Wang 0028, Kewei Li, Lan Huang 0002, Fengfeng Zhou |
MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Lap Sum Chan, Gen Li 0004 |
Zero is not absence: censoring-based differential abundance analysis for microbiome data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Arnaud Chol, Roman Sarrazin-Gendron, Eric Lécuyer, Mathieu Blanchette, Jérôme Waldispühl |
PERFUMES: pipeline to extract RNA functional motifs and exposed structures. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongtao Guan, Daniel Levy |
Estimation of inbreeding and kinship coefficients via latent identity-by-descent states. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zeyu Chen, Yuxin Miao, Zhiyuan Tan 0007, Qifan Hu, Yanhong Wu, Xinqi Li, Wenbo Guo 0010, Jin Gu |
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Fabrizio Pucci, Mehari B. Zerihun, Marianne Rooman, Alexander Schug |
pycofitness - Evaluating the fitness landscape of RNA and protein sequences. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yash Patel, Chenghao Zhu, Takafumi N. Yamaguchi, Yuan Zhe Bugh, Mao Tian, Aaron Holmes, Sorel T. Fitz-Gibbon, Paul C. Boutros |
NFTest: automated testing of Nextflow pipelines. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Mikaela Koutrouli, Katerina C. Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen |
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | J. Harry Caufield, Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas Matentzoglu, Hyeongsik Kim, Sierra A. T. Moxon, Justin T. Reese, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall |
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicole Pradas, Federico Jurado-Ruiz, Carles Onielfa, Pere Arús, Maria José Aranzana |
PERSEUS: an interactive and intuitive web-based tool for pedigree visualization. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yiyang Yu, Shivani Muthukumar, Peter K. Koo |
EvoAug-TF: extending evolution-inspired data augmentations for genomic deep learning to TensorFlow. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Woosung Jeon, Dongsup Kim |
AbFlex: designing antibody complementarity determining regions with flexible CDR definition. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Gabriel Loyer, Vladimir Reinharz |
Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Anna Sintsova, Hans-Joachim Ruscheweyh, Christopher M. Field, Lilith Feer, Bidong D. Nguyen, Benjamin Daniel, Wolf-Dietrich Hardt, Julia A. Vorholt, Shinichi Sunagawa |
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Carson M. Andorf, Olivia C. Haley, Rita K. Hayford, John L. Portwood II, Stephen Harding, Shatabdi Sen, Ethalinda K. S. Cannon, Jack M. Gardiner, Hye-Seon Kim, Margaret Woodhouse |
PanEffect: a pan-genome visualization tool for variant effects in maize. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Hannah-Marie Martiny, Nikiforos Pyrounakis, Thomas Nordahl Petersen, Oksana Lukjancenko, Frank Aarestrup, Philip T. L. C. Clausen, Patrick Munk |
ARGprofiler - a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Huangqingbo Sun, Jiayi Li, Robert F. Murphy |
Expanding the coverage of spatial proteomics: a machine learning approach. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jinyu Yu, Junxi Mu, Ting Wei, Hai-Feng Chen |
Multi-indicator comparative evaluation for deep learning-based protein sequence design methods. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Loïc Lannelongue, Michael Inouye |
Pitfalls of machine learning models for protein-protein interaction networks. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiqing Wu, Viktor H. Koelzer |
SST-editing: in silico spatial transcriptomic editing at single-cell resolution. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Seyedmohsen Hosseini, Geoffrey Brian Golding, Lucian Ilie |
Seq-InSite: sequence supersedes structure for protein interaction site prediction. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yash Patel, Arpi Beshlikyan, Madison Jordan, Gina Kim, Aaron Holmes, Takafumi N. Yamaguchi, Paul C. Boutros |
PipeVal: light-weight extensible tool for file validation. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiao Wang, Ziyi Chai, Shaohua Li, Yan Liu 0038, Chen Li 0021, Yu Jiang, Quanzhong Liu |
CTISL: a dynamic stacking multi-class classification approach for identifying cell types from single-cell RNA-seq data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zongquan Li, Pengxuan Ren, Hao Yang, Jie Zheng 0002, Fang Bai |
TEFDTA: a transformer encoder and fingerprint representation combined prediction method for bonded and non-bonded drug-target affinities. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | David Ferreiro, Catarina Branco, Miguel Arenas |
Selection among site-dependent structurally constrained substitution models of protein evolution by approximate Bayesian computation. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Shreyas Arvindekar, Aditi S. Pathak, Kartik Majila, Shruthi Viswanath |
Optimizing representations for integrative structural modeling using Bayesian model selection. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Ting Liu, K. Anton Feenstra, Zhisheng Huang, Jaap Heringa |
Mining literature and pathway data to explore the relations of ketamine with neurotransmitters and gut microbiota using a knowledge-graph. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuzhen Mao, Yen-Yi Lin, Nelson K. Y. Wong, Stanislav Volik, Funda Sar, Colin C. Collins, Martin Ester |
Phenotype prediction from single-cell RNA-seq data using attention-based neural networks. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Florian J. Gisdon, Mariella Zunker, Jan Niclas Wolf, Kai Prüfer, Jörg Ackermann 0001, Christoph Welsch, Ina Koch |
Graph-theoretical prediction of biological modules in quaternary structures of large protein complexes. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Haixiang Zhang, Xiumei Hong, Yinan Zheng, Lifang Hou, Cheng Zheng, Xiaobin Wang, Lei Liu 0004 |
High-dimensional quantile mediation analysis with application to a birth cohort study of mother-newborn pairs. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Haohui Zhang, Yuwei Wang, Bin Lian, Yiran Wang, Xingyi Li, Tao Wang, Xuequn Shang, Hui Yang, Ahmad Aziz, Jialu Hu |
Scbean: a python library for single-cell multi-omics data analysis. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Chunyue Feng, Kok Haur Ong, David M. Young, Bingxian Chen, Longjie Li 0004, Xinmi Huo, Haoda Lu, Weizhong Gu, Fei Liu, Hongfeng Tang, Manli Zhao, Min Yang, Kun Zhu 0027, Limin Huang, Qiang Wang, Gabriel Pik Liang Marini, Kun Gui, Hao Han, Stephan J. Sanders, Lin Li, Weimiao Yu, Jianhua Mao |
Artificial intelligence-assisted quantification and assessment of whole slide images for pediatric kidney disease diagnosis. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Edo Dotan, Gal Jaschek, Tal Pupko, Yonatan Belinkov |
Effect of tokenization on transformers for biological sequences. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander Peltzer, Christopher Mohr, Kai Bernd Stadermann, Matthias Zwick, Ramona Schmid |
nf-core/nanostring: a pipeline for reproducible NanoString nCounter analysis. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Jeffrey K. Ng, Tychele Turner |
HAT: de novo variant calling for highly accurate short-read and long-read sequencing data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinyuan Huang, Xiujuan Gao, Ling Fu |
BINGO: a blind unmixing algorithm for ultra-multiplexing fluorescence images. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Chiung-Ting Wu, Dongping Du, Lulu Chen, Rujia Dai, Chunyu Liu 0001, Guoqiang Yu, Saurabh Bhardwaj, Sarah J. Parker, Zhen Zhang, Robert Clarke, David M. Herrington, Yue Wang 0021 |
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Lu Yang, Pei Wang, Jun Chen |
2dGBH: Two-dimensional group Benjamini-Hochberg procedure for false discovery rate control in two-way multiple testing of genomic data. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Zuher Jahshan, Leonid Yavits |
ViTAL: Vision TrAnsformer based Low coverage SARS-CoV-2 lineage assignment. |
Bioinform. |
2024 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander Kramer, Theo Sanderson, Russell Corbett-Detig |
Treenome Browser: co-visualization of enormous phylogenies and millions of genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Improving annotation propagation on molecular networks through random walks: introducing ChemWalker. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Mikolaj Spytek, Mateusz Krzyzinski, Sophie Hanna Langbein, Hubert Baniecki, Marvin N. Wright, Przemyslaw Biecek |
survex: an R package for explaining machine learning survival models. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
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