Search results for "GENSiPS"

Hits ?▲	Authors	Title	Venue	Year	Link
1	Mohammadmahdi R. Yousefi	Compromised intervention policies for phenotype alteration.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Anwoy Kumar Mohanty, Aniruddha Datta, Jijayanagaram Venkatraj	On the modeling of heterogeneity in cancer tissue.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Bilal Wajid, Ali Riza Ekti, Amina Noor, Erchin Serpedin, Muhammad Naeem Ayyaz, Hazem N. Nounou, Mohamed N. Nounou	Supersonic MiB.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Yi Yang, Si Li, Andrew S. Maxwell, Natalie D. Barker, Yan Peng, Ying Li, Haoni Li, Xi Wu 0007, Peng Li, Tao Huang, Chenhua Zhang, Nan Wang 0002, Edward J. Perkins, Chaoyang Zhang, Ping Gong 0001	Deciphering chemically-induced reversible neurotoxicity by reconstructing perturbed pathways from time series microarray gene expression data.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Nilanjana Banerjee, Sonia Chothani, Lyndsay N. Harris, Nevenka Dimitrova	Identifying RNAseq-based coding-noncoding co-expression interactions in breast cancer.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Qian Wan, Ranadip Pal	A multivariate random forest based framework for drug sensitivity prediction.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Lingjia Kong, Kaisa-Leena Aho, Kirsi Granberg, Christophe Roos, Reija Autio	DBComposer: An R package for integrative analysis and management of gene expression microarray data.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Rolando J. Olivares, Arvind U. K. Rao, Ganesh Rao, Jeffrey S. Morris, Veerabhadran Baladandayuthapani	Integrative analysis of multi-modal correlated imaging-genomics data in glioblastoma.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Mohammad Shahrokh Esfahani, Edward R. Dougherty	Effect of separate sampling on classification and the minimax criterion.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Arezou Koohi	Prediction of drug-target interactions using popular Collaborative Filtering methods.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Lori A. Dalton	On the optimality of k-means clustering.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Hua Li, Jim Vallandingham, Jie Chen 0008	SeqBBS: A change-point model based algorithm and R package for searching CNV regions via the ratio of sequencing reads.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen	Characterization of conditions for competing endogenous RNA regulation in GBM.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Po-Yen Wu, John H. Phan, May D. Wang	An approach for assessing RNA-seq quantification algorithms in replication studies.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Mario Flores, Yufei Huang, Yidong Chen	NetceRNA: An algorithm for construction of phenotype-specific regulation networks via competing endogenous RNAs.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Esmaeil Atashpaz-Gargari, Ulisses M. Braga-Neto, Edward R. Dougherty	Improved branch-and-bound algorithm for U-curve optimization.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Noah Berlow, Saad Haider, Ranadip Pal, Charles Keller	Quantifying the inference power of a drug screen for predictive analysis.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Amina Noor, Aitzaz Ahmad, Erchin Serpedin, Mohamed N. Nounou, Hazem N. Nounou	ROBNCA: Robust Network Component Analysis for recovering transcription factor activities.	GENSiPS	2013	DBLP DOI BibTeX RDF
1		2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2013, Houston, TX, USA, November 17-19, 2013	GENSiPS	2013	DBLP BibTeX RDF
1	Jason M. Knight, Ivan Ivanov 0001, Edward R. Dougherty	Bayesian multivariate Poisson model for RNA-seq classification.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Belhassen Bayar, Nidhal Bouaynaya, Roman Shterenberg	Inference of genetic regulatory networks with unknown covariance structure.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Sriram Sridharan, Aniruddha Datta, Jijayanagaram Venkatraj	Boolean model to experimental validation: A preliminary attempt.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Zhen Gao, Jianhua Ruan	A structure-based approach to predicting in vitro transcription factor-DNA interaction.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty	Drug effect study on proliferation and survival pathways on cell line-based platform: A stochastic hybrid systems approach.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Rajani Varghese, Sriram Sridharan, Aniruddha Datta, Jijayanagaram Venkatraj	Modeling hypoxia stress response pathways.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Yan Cui, Xiaodong Cai, Zhong Jin	Semi-supervised classification using sparse representation for cancer recurrence prediction.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Ying-Wooi Wan, John Nagorski, Genevera I. Allen, Zhaohui Li, Zhandong Liu	Identifying cancer biomarkers through a network regularized Cox model.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Ting Chen, Ulisses M. Braga-Neto	Optimal Bayesian MMSE estimation of the coefficient of determination for discrete prediction.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Lori A. Dalton	Optimal neyman-pearson classification under Bayesian uncertainty models.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Osama A. Arshad, Priyadharshini S. Venkatasubramami, Aniruddha Datta, Jijayanagaram Venkatraj	Exploiting the cancer and diabetes metabolic connection for therapeutic purposes.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty	Effect of mixing probabilities on the bias of cross-validation under separate sampling.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Roozbeh Dehghannasiri, Byung-Jun Yoon, Edward R. Dougherty	Designing experiments for optimal reduction of uncertainty in gene regulatory networks.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Anindya Bhadra, Veerabhadran Baladandayuthapani	Integrative sparse Bayesian analysis of high-dimensional multi-platform genomic data in glioblastoma.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Xiaoning Qian, Edward R. Dougherty	Phenotypically constrained Boolean network inference with prescribed steady states.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang	An HMM-based Exome Peak-finding package for RNA epigenome sequencing data.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Alain B. Tchagang, Sieu Phan, Fazel Famili, Youlian Pan, Adrian Cutler, Jitao Zou	A generic model of transcriptional regulatory networks: Application to plants under abiotic stress.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Antti Larjo, Harri Lähdesmäki	Active learning for Bayesian network models of biological networks using structure priors.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Tianyi Yang, Nguyen T. Nguyen, Yufang Jin, Merry Lindsey	Parameter distribution estimation in first order ODE.	GENSiPS	2013	DBLP DOI BibTeX RDF
1	Yanxun Xu, Jie Zhang 0053, Yuan Yuan 0003, Riten Mitra, Peter Müller 0003, Yuan Ji	A Bayesian graphical model for integrative analysis of TCGA data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Xuchu Hou, Guoqiang Yu, Xiguo Yuan, Bai Zhang, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Subha Madhavan	Accurate identification of significant aberrations in contaminated cancer genome.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Seyed Javad Sajjadi, Xiaoning Qian, Bo Zeng 0001	Network-based methods to identify highly discriminating subsets of biomarkers.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Ying Cai, Bernard Fendler, Gurinder S. Atwal	Utilizing RNA-Seq data for cancer network inference.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Saad Haider, Noah Berlow, Ranadip Pal, Lara E. Davis, Charles Keller	Combination therapy design for targeted therapeutics from a drug-protein interaction perspective.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Navadon Khunlertgit, Byung-Jun Yoon	Finding robust pathway markers for cancer classification.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Peng Qiu	Toward exhaustive gating of flow cytometry data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Mohammed Elhenawy, Xuchu Hou, Guoqiang Yu	A non-parametric approach for estimating stromal contamination in cancer samples.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Yi Zhao, Tsung-Heng Tsai, Cristina Di Poto, Lewis K. Pannell, Mahlet G. Tadesse, Habtom W. Ressom	Variability assessment of LC-MS experiments and its application to experimental design and difference detection.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Meng Lu, Hye-Seung Lee, David Hadley, Jianhua Z. Huang, Xiaoning Qian	Logistic principal component analysis for rare variants in gene-environment interaction analysis.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Timothy M. Josserand	External control of probabilistic boolean networks using inhomogeneous Markov chains.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Anwoy Kumar Mohanty, Aniruddha Datta, Jijayanagaram Venkatraj	Determining the relative prevalence of different subpopulations in heterogeneous cancer tissue.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Bilal Wajid, Erchin Serpedin, Mohamed N. Nounou, Hazem N. Nounou	MiB: A comparative assembly processing pipeline.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Sanvesh Srivastava, Wenyi Wang 0001, Pascal O. Zinn, Rivka R. Colen, Veerabhadran Baladandayuthapani	Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom	Normalization of LC-MS data using Gaussian process.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Günhan Gülsoy, Tamer Kahveci	Inferring gene functions from metabolic reactions.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Qingguo Wang, Zhongming Zhao	A comparative study of methods for detecting small somatic variants in disease-normal paired next generation sequencing data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Xiaoxiao Xu, Gang Shi, Arye Nehorai	Genome-wide meta-regression of gene-environment interaction.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Ivo Provazník, Vladimira Kubicova, Helena Skutkova, Jiri Nedved, Ewaryst Tkacz, Petr Babula, René Kizek	Detection of short exons in DNA sequences using complex wavelet transform of structural features.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Lori A. Dalton, Edward R. Dougherty	Optimal Bayesian classification and its application to gene regulatory networks.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Tzu-Hung Hsiao, Hung-I Harry Chen, Yidong Chen	Identification of functional genomic regions with copy number alteration in liver cancer.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Yanxun Xu, Xiaofeng Zheng, Yuan Yuan 0003, Marcos R. Estecio, Jean-Pierre Issa, Yuan Ji, Shoudan Liang	A Bayesian model for SNP discovery based on next-generation sequencing data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Mario Flores, Yufei Huang	A new algorithm for predicting competing endogenous rnas.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Elizabeth M. Jennings, Jeffrey S. Morris, Raymond J. Carroll, Ganiraju Manyam, Veerabhadran Baladandayuthapani	Hierarchical Bayesian methods for integration of various types of genomics data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Xiaoning Qian	A new phenotypically constrained control policy in boolean networks based on basins of attraction.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Mohammed Elhenawy, Guoqiang Yu	NMF based approach for finding recurrent aberrations in DNA copy number data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Esmaeil Atashpaz-Gargari, Mohammad Shahrokh Esfahani, Richard Metz, Charles D. Johnson	OBGene: Optimal barcode generator for NGS experiments.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Xiaogang Wu, Jake Y. Chen	An evaluation for merging signaling pathways by using protein-protein interaction data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Xiaohu Shen, Haris Vikalo	A message passing algorithm for reference-guided sequence assembly from high-throughput sequencing data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Xiaoxiao Xu, Arye Nehorai, Joseph D. Dougherty	Cell type specific analysis of human transcriptome data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Amin Ahmadi Adl, Xiaoning Qian, Ping Xu, Kendra Vehik, Jeffrey P. Krischer	Feature ranking based on synergy networks to identify prognostic markers in DPT-1.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	John H. Phan, Po-Yen Wu, May D. Wang	Improving the flexibility of RNA-Seq data analysis pipelines.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Sean S. Wang, Olga C. Rodriguez, Ye Tian, Shaozhen Ye, Emanual F. Petricoin, Chris Albanese	Integration of imaging and systems biology to study treatment of medulloblastoma.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Riten Mitra, Peter Müller 0003, Yuan Ji, Gordon B. Mills, Yiling Lu	Sparse Bayesian graphical models for RPPA time course data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Ting Chen, Ulisses M. Braga-Neto	A statistical test for intrinsically multivariate predictive genes.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Ahsan Zaigam Rizvi, C. Bhattacharya	Detection and clustering of palindrome in genome sequences by DCT-II method.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Ranadip Pal, Noah Berlow, Saad Haider	Anticancer drug sensitivity analysis: An integrated approach applied to Erlotinib sensitivity prediction in the CCLE database.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Karl B. Gregory, Kevin R. Coombes, Amin A. Momin, Luc Girard, Lauren A. Byers, Steven Lin, Michael Peyton, John V. Heymach, John D. Minna, Veerabhadran Baladandayuthapani	Latent feature decompositions for integrative analysis of diverse high-throughput genomic data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Jian Cui, Xuepo Ma, Xiaolin Zhang, William Haskins, Jianqiu (Michelle) Zhang	An SILAC quantification algorithm for LC-FTMS.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Amir Nikooienejad, Richard Metz, Byung-Jun Yoon, Charles D. Johnson	Fast DNA barcode generating algorithm using Radix Coding method.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Min Zhao 0006, Jingchun Sun, Zhongming Zhao	Comprehensive analyses of tumor suppressor genes in protein-protein interaction networks: A topological perspective.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Lin Zhang 0015, Hui Liu 0024, Tzu-Hung Hsiao, Yidong Chen, Yufei Huang	An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Pey-Chang Kent Lin, Sunil P. Khatri	Determining gene function in boolean networks using boolean satisfiability.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Gregory Ditzler, Gail Rosen, Robi Polikar	Information theoretic feature selection for high dimensional metagenomic data.	GENSiPS	2012	DBLP DOI BibTeX RDF
1		Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2012, Washington, DC, USA, December 2-4, 2012	GENSiPS	2012	DBLP BibTeX RDF
1	Jinlian Wang, Hongyan Yuan, Mahlet G. Tadesse, Habtom W. Ressom	Integration of multiple data sources for identifying functional modules using Bayesian network.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Pascal Szacherski, Jean-François Giovannelli, Laurent Gerfault, Audrey Giremus, Pierre Grangeat	Robust MS serum sample classification in proteomics by the use of inverse problems.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Mattia Bosio, Pau Bellot Pujalte, Philippe Salembier, Albert Oliveras-Vergés	Multiclass cancer-microarray classification algorithm with pair-against-all redundancy.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Manas Bellani, Julien Epps, Gavin A. Huttley	A comparison of periodicity profile methods for sequence analysis.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Nitin K. Singh, Mehmet Eren Ahsen, Shiva Mankala, M. Vidyasagar, Michael A. White	Inferring weighted and directed gene interaction networks from gene expression data using the phi-mixing coefficient.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Ghulam Rasool 0001, Nidhal Bouaynaya	Inference of time-varying gene networks using constrained and smoothed Kalman filtering.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Steffen Schober, Katharina Mir, Klaus Neuhaus, Martin Bossert	Design of short barcodes for next generation sequencing of DNA and RNA.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Yihua Liu, Peng Qiu	Integrative analysis of methylation and gene expression data in TCGA.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Mohammadmahdi R. Yousefi, Aniruddha Datta, Edward R. Dougherty	Optimal therapeutic methods with random-length response in probabilistic boolean networks.	GENSiPS	2012	DBLP DOI BibTeX RDF
1	Hong Cai, Yufeng Wang 0002	Geometrical modification of wavelet SVM kernels and its application in microarray analysis.	GENSiPS	2011	DBLP DOI BibTeX RDF
1	Shiyu Xu, Ying Chen	A Compton scattering suppression based image reconstruction method for Digital Breast Tomosynthesis.	GENSiPS	2011	DBLP DOI BibTeX RDF
1	Jason M. Knight, Edward R. Dougherty	Attractor estimation and model refinement for stochastic regulatory network models.	GENSiPS	2011	DBLP DOI BibTeX RDF
1	Dong Yue 0002, Yidong Chen, Shou-Jiang Gao, Yufei Huang	Computational prediction of microRNA regulatory pathways.	GENSiPS	2011	DBLP DOI BibTeX RDF
1	Sayed Mohammad Ebrahim Sahraeian, Byung-Jun Yoon	Probabilistic consistency transformation for multiple alignment of biological networks.	GENSiPS	2011	DBLP DOI BibTeX RDF
1	Hui Huang 0007, Xiaogang Wu, Sara Ibrahim, Marianne McKenzie, Jake Y. Chen	Predicting drug efficacy based on the integrated breast cancer pathway model.	GENSiPS	2011	DBLP DOI BibTeX RDF
1		2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2011, San Antonio, TX, USA, December 4-6, 2011	GENSiPS	2011	DBLP BibTeX RDF
1	Pey-Chang Kent Lin, Sunil P. Khatri	Efficient cancer therapy using Boolean networks and Max-SAT-based ATPG.	GENSiPS	2011	DBLP DOI BibTeX RDF

Publications at "GENSiPS"( http://dblp.L3S.de/Venues/GENSiPS )