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Venues (Conferences, Journals, ...)
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GrowBag graphs for keyword ? (Num. hits/coverage)
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The graphs summarize 2639 occurrences of 1565 keywords
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Results
Found 8097 publication records. Showing 8086 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
9 | Francesca Picarazzi, Marika Zuanon, Gaia Pasqualetto, Silvia Cammarone, Isabella Romeo, Mark T. Young, Andrea Brancale, Marcella Bassetto, Mattia Mori |
Identification of Small Molecular Chaperones Binding P23H Mutant Opsin through an In Silico Structure-Based Approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 62(22), pp. 5794-5805, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Rishal Aggarwal, Akash Gupta, Vineeth R. Chelur, C. V. Jawahar, U. Deva Priyakumar |
DeepPocket: Ligand Binding Site Detection and Segmentation using 3D Convolutional Neural Networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
J. Chem. Inf. Model. ![In: J. Chem. Inf. Model. 62(21), pp. 5069-5079, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Ian T. Hoffecker, Alan Shaw, Viktoria Sorokina, Ioanna Smyrlaki, Björn Högberg |
Stochastic modeling of antibody binding predicts programmable migration on antigen patterns. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nat. Comput. Sci. ![In: Nat. Comput. Sci. 2(3), pp. 179-192, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Wenbin Xu, Karsten Reuter, Mie Andersen |
Predicting binding motifs of complex adsorbates using machine learning with a physics-inspired graph representation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nat. Comput. Sci. ![In: Nat. Comput. Sci. 2(7), pp. 443-450, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ke Han, Long-Chen Shen, Yi-Heng Zhu, Jian Xu, Jiangning Song, Dong-Jun Yu |
MAResNet: predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ning Wang, Ke Yan 0003, Jun Zhang, Bin Liu 0014 |
iDRNA-ITF: identifying DNA- and RNA-binding residues in proteins based on induction and transfer framework. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(4), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Li Zhang, Chun-Chun Wang, Xing Chen 0001 |
Predicting drug-target binding affinity through molecule representation block based on multi-head attention and skip connection. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(6), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Junjie Wee, Kelin Xia |
Persistent spectral based ensemble learning (PerSpect-EL) for protein-protein binding affinity prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(2), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Wenkai Yan, Zutan Li, Cong Pian, Yufeng Wu |
PlantBind: an attention-based multi-label neural network for predicting plant transcription factor binding sites. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(6), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ettayapuram Ramaprasad Azhagiya Singam, Martyn T. Smith, David McCoy, Alan E. Hubbard, Michele A. La Merrill, Kathleen A. Durkin |
Predicting the binding of small molecules to nuclear receptors using machine learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(3), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Xinxin Peng, Xiaoyu Wang, Yuming Guo, Zongyuan Ge, Fuyi Li, Xin Gao 0001, Jiangning Song |
RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(4), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Thanh-Binh Nguyen 0007, Douglas E. V. Pires, David B. Ascher |
CSM-carbohydrate: protein-carbohydrate binding affinity prediction and docking scoring function. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yuning Yang, Zilong Hou, Yansong Wang, Hongli Ma, Pingping Sun, Zhiqiang Ma 0003, Ka-Chun Wong, Xiangtao Li |
HCRNet: high-throughput circRNA-binding event identification from CLIP-seq data using deep temporal convolutional network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(2), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Qianmu Yuan, Sheng Chen, Yu Wang, Huiying Zhao, Yuedong Yang |
Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(6), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yiming Fang, Xuejun Liu, Hui Liu |
Attention-aware contrastive learning for predicting T cell receptor-antigen binding specificity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(6), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Fuxu Wang, Haoyan Wang, Lizhuang Wang, Haoyu Lu, Shizheng Qiu, Tianyi Zang, Xinjun Zhang, Yang Hu 0008 |
MHCRoBERTa: pan-specific peptide-MHC class I binding prediction through transfer learning with label-agnostic protein sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(3), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Yeji Wang, Shuo Wu, Yanwen Duan, Yong Huang |
A point cloud-based deep learning strategy for protein-ligand binding affinity prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Hui Li, Zhaohong Deng, Haitao Yang, Xiaoyong Pan, Zhisheng Wei, Hong-Bin Shen, Kup-Sze Choi, Lei Wang, Shitong Wang 0001, Jing Wu |
circRNA-binding protein site prediction based on multi-view deep learning, subspace learning and multi-view classifier. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Weining Yuan, Guanxing Chen, Calvin Yu-Chian Chen |
FusionDTA: attention-based feature polymerizer and knowledge distillation for drug-target binding affinity prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Qianmu Yuan, Sheng Chen, Jiahua Rao, Shuangjia Zheng, Huiying Zhao, Yuedong Yang |
AlphaFold2-aware protein-DNA binding site prediction using graph transformer. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(2), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Vinícius de Almeida Paiva, Murillo Ventura Mendonça, Sabrina de Azevedo Silveira, David B. Ascher, Douglas E. V. Pires, Sandro C. Izidoro |
GASS-Metal: identifying metal-binding sites on protein structures using genetic algorithms. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(5), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Ruibo Zhang, Souparno Ghosh, Ranadip Pal |
Predicting binding affinities of emerging variants of SARS-CoV-2 using spike protein sequencing data: observations, caveats and recommendations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(3), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Hongfei Li, Yue Gong, Yifeng Liu, Hao Lin 0001, Guohua Wang |
Detection of transcription factors binding to methylated DNA by deep recurrent neural network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Wenjuan Nie, Lei Deng 0002 |
TSNAPred: predicting type-specific nucleic acid binding residues via an ensemble approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(4), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Rongfan Tang, Pengcheng Chen, Zhe Wang 0041, Lingling Wang, Haiping Hao, Tingjun Hou, Huiyong Sun |
Characterizing the stabilization effects of stabilizers in protein-protein systems with end-point binding free energy calculations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(3), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Yongqing Zhang, Zixuan Wang, Yuanqi Zeng, Yuhang Liu, Shuwen Xiong, Maocheng Wang, Jiliu Zhou, Quan Zou 0001 |
A novel convolution attention model for predicting transcription factor binding sites by combination of sequence and shape. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Anjali Dhall, Sumeet Patiyal, Gajendra P. S. Raghava |
HLAncPred: a method for predicting promiscuous non-classical HLA binding sites. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(5), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Fuhao Zhang, Bi Zhao, Wenbo Shi, Min Li 0007, Lukasz A. Kurgan |
DeepDISOBind: accurate prediction of RNA-, DNA- and protein-binding intrinsically disordered residues with deep multi-task learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Zheng Jiang, Si-Rui Xiao, Rong Liu |
Dissecting and predicting different types of binding sites in nucleic acids based on structural information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(1), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Yaqi Zhang, Gancheng Zhu, Kewei Li, Fei Li, Lan Huang 0002, Meiyu Duan, Fengfeng Zhou |
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Briefings Bioinform. ![In: Briefings Bioinform. 23(5), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Pengyu Ni, Zhengchang Su |
PCRMS: a database of predicted cis-regulatory modules and constituent transcription factor binding sites in genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Database J. Biol. Databases Curation ![In: Database J. Biol. Databases Curation 2022(2022), 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Charles Abreu Santana, Sandro C. Izidoro, Raquel Cardoso de Melo Minardi, Jonathan D. Tyzack, António J. M. Ribeiro, Douglas E. V. Pires, Janet M. Thornton, Sabrina de Azevedo Silveira |
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(W1), pp. 392-397, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | David Jakubec, Petr Skoda 0001, Radoslav Krivák, Marian Novotny, David Hoksza |
PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(W1), pp. 593-597, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Robin Steinhaus, Peter N. Robinson, Dominik Seelow |
FABIAN-variant: predicting the effects of DNA variants on transcription factor binding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(W1), pp. 322-329, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
9 | Jaime Abraham Castro-Mondragón, Rafael Riudavets Puig, Ieva Rauluseviciute, Roza Berhanu lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y. Leung, Alejandro Aguirre 0004, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoît Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W. Wasserman, François Parcy, Anthony Mathelier |
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(D1), pp. 165-173, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Xiaona Wang, Fengcheng Li, Wenqi Qiu 0003, Binbin Xu, Yanlin Li, Xichen Lian, Hongyan Yu, Zhao Zhang, Jianxin Wang 0001, Zhaorong Li, Weiwei Xue, Feng Zhu 0004 |
SYNBIP: synthetic binding proteins for research, diagnosis and therapy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(D1), pp. 560-570, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Alexandr Boytsov, Sergey Abramov, Ariuna Z. Aiusheeva, Alexandra M. Kasianova, Eugene Baulin, Ivan A. Kuznetsov, Yurii S. Aulchenko, Semyon Kolmykov, Ivan S. Yevshin, Fedor A. Kolpakov, Ilya E. Vorontsov, Vsevolod J. Makeev, Ivan V. Kulakovskiy |
ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(W1), pp. 51-56, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Kannan Harini, Ambuj Srivastava, Arulsamy Kulandaisamy, M. Michael Gromiha |
ProNAB: database for binding affinities of protein-nucleic acid complexes and their mutants. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(D1), pp. 1528-1534, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Weihao Zhao, Shang Zhang, Yumin Zhu, Xiaochen Xi, Pengfei Bao, Ziyuan Ma, Thomas H. Kapral, Shuyuan Chen, Bojan Zagrovic, Yu-Cheng T. Yang, Zhi John Lu |
POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(D1), pp. 287-294, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Jake E. McGreig, Hannah Uri, Magdalena Antczak, Michael J. E. Sternberg, Martin Michaelis, Mark N. Wass |
3DLigandSite: structure-based prediction of protein-ligand binding sites. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(W1), pp. 13-20, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Fayrouz Hammal, Pierre de langen, Aurélie Bergon, Fabrice Lopez, Benoît Ballester |
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nucleic Acids Res. ![In: Nucleic Acids Res. 50(D1), pp. 316-325, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yuan Chen, Guowei Dai |
Binding number and path-factor critical deleted graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
AKCE Int. J. Graphs Comb. ![In: AKCE Int. J. Graphs Comb. 19(3), pp. 197-200, September 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Amy Dong, Xiaomin Bao |
GPSmatch: an R package for comparing Genomic-binding Profile Similarity among transcriptional regulators using customizable databases. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 853-855, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Puneet Rawat, Divya Sharma, R. Prabakaran, Fathima Ridha, Mugdha Mohkhedkar, Vani Janakiraman, M. Michael Gromiha |
Ab-CoV: a curated database for binding affinity and neutralization profiles of coronavirus-related antibodies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(16), pp. 4051-4052, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Elan Shatoff, Ralf Bundschuh |
dsRBPBind: modeling the effect of RNA secondary structure on double-stranded RNA-protein binding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 687-693, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ruiyan Hou, Yuanghua Huang |
Genomic sequences and RNA-binding proteins predict RNA splicing efficiency in various single-cell contexts. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(12), pp. 3231-3237, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yawei Wang, Yuning Yang, Zhiqiang Ma 0003, Ka-Chun Wong, Xiangtao Li |
EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 678-686, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Chih-Hao Lu, Chih-Chieh Chen, Chin-Sheng Yu, Yen-Yi Liu, Jia-Jun Liu, Sung-Tai Wei, Yu-Feng Lin |
MIB2: metal ion-binding site prediction and modeling server. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(18), pp. 4428-4429, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Jun Zhang, Ke Yan 0003, Qingcai Chen, Bin Liu 0014 |
PreRBP-TL: prediction of species-specific RNA-binding proteins based on transfer learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2135-2143, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Pengyu Zhang, Yingfu Wu, Haoru Zhou, Bing Zhou, Hongming Zhang 0002, Hao Wu 0062 |
CLNN-loop: a deep learning model to predict CTCF-mediated chromatin loops in the different cell lines and CTCF-binding sites (CBS) pair types. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(19), pp. 4497-4504, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Tong Zhou, Jie Rong, Yang Liu, Weikang Gong, Chunhua Li |
An ensemble approach to predict binding hotspots in protein-RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(9), pp. 2452-2458, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Min Li 0007, Zhangli Lu, Yifan Wu, Yaohang Li |
BACPI: a bi-directional attention neural network for compound-protein interaction and binding affinity prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 1995-2002, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yoochan Myung, Douglas E. V. Pires, David B. Ascher |
CSM-AB: graph-based antibody-antigen binding affinity prediction and docking scoring function. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 1141-1143, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Pengpai Li, Zhi-Ping Liu |
PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2162-2168, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ren Yi, Kyunghyun Cho, Richard Bonneau |
NetTIME: a multitask and base-pair resolution framework for improved transcription factor binding site prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(20), pp. 4762-4770, October 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Jianan Li, Keisuke Yanagisawa, Yasushi Yoshikawa, Masahito Ohue, Yutaka Akiyama |
Plasma protein binding prediction focusing on residue-level features and circularity of cyclic peptides by deep learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 1110-1117, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ariel A. Aptekmann, J. Buongiorno, D. Giovannelli, M. Glamoclija, Diego U. Ferreiro, Yana Bromberg |
mebipred: identifying metal-binding potential in protein sequence. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(14), pp. 3532-3540, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ruheng Wang, Junru Jin, Quan Zou 0001, Kenta Nakai, Leyi Wei |
Predicting protein-peptide binding residues via interpretable deep learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(13), pp. 3351-3360, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Xiaoqing Ru, Xiucai Ye, Tetsuya Sakurai, Quan Zou 0001 |
NerLTR-DTA: drug-target binding affinity prediction based on neighbor relationship and learning to rank. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 1964-1971, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Brendon H. Cooper, Tsu-Pei Chiu, Remo Rohs |
Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metrics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(22), pp. 5121-5123, November 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yan Li, Lijun Quan, Yiting Zhou, Yelu Jiang, Kailong Li, Tingfang Wu, Qiang Lyu |
Identifying modifications on DNA-bound histones with joint deep learning of multiple binding sites in DNA sequence. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(17), pp. 4070-4077, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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9 | Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang 0003, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong, Dong-Qing Wei |
A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Nat. Mach. Intell. ![In: Nat. Mach. Intell. 4(3), pp. 300-311, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Simone Brogi, Sara Rossi, Roberta Ibba, Stefania Butini, Vincenzo Calderone, Giuseppe Campiani, Sandra Gemma |
In Silico Analysis of Peptide-Based Derivatives Containing Bifunctional Warheads Engaging Prime and Non-Prime Subsites to Covalent Binding SARS-CoV-2 Main Protease (Mpro). ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. ![In: Comput. 10(5), pp. 69, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Gregory W. Kyro, Rafael I. Brent, Victor S. Batista |
HAC-Net: A Hybrid Attention-Based Convolutional Neural Network for Highly Accurate Protein-Ligand Binding Affinity Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2212.12440, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Binjie Guo, Hanyu Zheng, Huan Huang, Haohan Jiang, Xiaodan Li, Naiyu Guan, Yanming Zuo, Yicheng Zhang, Hengfu Yang, Xuhua Wang |
Protein 3D structure-based neural networks highly improve the accuracy in compound-protein binding affinity prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2204.12586, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Fang Wu, Qiang Zhang, Dragomir R. Radev, Yuyang Wang, Xurui Jin, Yinghui Jiang, Zhangming Niu, Stan Z. Li |
Pre-training of Deep Protein Models with Molecular Dynamics Simulations for Drug Binding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2204.08663, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Dmitrii Gavrilev, Nurlybek Amangeldiuly, Sergei Ivanov 0002, Evgeny Burnaev |
High Performance of Gradient Boosting in Binding Affinity Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2205.07023, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Alessandro Achille, Stefano Soatto |
On Binding Objects to Symbols: Learning Physical Concepts to Understand Real from Fake. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2207.12186, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ondrej Biza, Robert Platt 0001, Jan-Willem van de Meent, Lawson L. S. Wong, Thomas Kipf |
Binding Actions to Objects in World Models. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2204.13022, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | |
Do Transformers use variable binding? ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2203.00162, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Shrimon Mukherjee, Madhusudan Ghosh, Partha Basuchowdhuri |
Deep Graph Convolutional Network and LSTM based approach for predicting drug-target binding affinity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2201.06872, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP BibTeX RDF |
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9 | Kota Chin, Keita Emura, Kazumasa Omote, Shingo Sato |
A Sealed-bid Auction with Fund Binding: Preventing Maximum Bidding Price Leakage. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2207.10823, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | André Hirschowitz, Tom Hirschowitz, Ambroise Lafont, Marco Maggesi |
Variable binding and substitution for (nameless) dummies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2209.02614, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Hannes Stärk, Octavian-Eugen Ganea, Lagnajit Pattanaik, Regina Barzilay, Tommi S. Jaakkola |
EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2202.05146, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP BibTeX RDF |
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9 | Syeda Sakira Hassan, Rahul Mangayil, Tommi Aho, Olli Yli-Harja, Matti Karp |
Identification of feasible pathway information for c-di-GMP binding proteins in cellulose production. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2204.12526, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Haoyu Liu, Yang Liu, Hongkai He, Hangfang Yang |
LEBP - Language Expectation & Binding Policy: A Two-Stream Framework for Embodied Vision-and-Language Interaction Task Learning Agents. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2203.04637, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Franziska Kaltenberger, Sebastian Otte, Martin V. Butz |
Binding Dancers Into Attractors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2206.02558, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yiming Fang, Xuejun Liu, Hui Liu |
Attention-aware contrastive learning for predicting T cell receptor-antigen binding specificity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2206.11255, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Zhijian Lyu, Shaohua Jiang, Yigao Liang, Min Gao |
GDGRU-DTA: Predicting Drug-Target Binding Affinity Based on GNN and Double GRU. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2204.11857, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Haitao Lin, Yufei Huang, Meng Liu 0014, Xuanjing Li, Shuiwang Ji, Stan Z. Li |
DiffBP: Generative Diffusion of 3D Molecules for Target Protein Binding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2211.11214, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Meng Wang, Chuqi Lei, Jianxin Wang 0001, Yaohang Li, Min Li 0007 |
TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2208.04314, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Zhoujun Cheng, Tianbao Xie, Peng Shi 0010, Chengzu Li, Rahul Nadkarni, Yushi Hu, Caiming Xiong, Dragomir Radev, Mari Ostendorf, Luke Zettlemoyer, Noah A. Smith, Tao Yu 0009 |
Binding Language Models in Symbolic Languages. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2210.02875, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Meng Liu, Youzhi Luo, Kanji Uchino, Koji Maruhashi, Shuiwang Ji |
Generating 3D Molecules for Target Protein Binding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2204.09410, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Hao Zheng, Hui Lin, Rong Zhao, Luping Shi |
Dance of SNN and ANN: Solving binding problem by combining spike timing and reconstructive attention. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2211.06027, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yiqiang Yi, Xu Wan, Kangfei Zhao, Le Ou-Yang, Peilin Zhao |
Predicting Protein-Ligand Binding Affinity with Equivariant Line Graph Network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2210.16098, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Naoki Hiratani, Haim Sompolinsky |
Optimal quadratic binding for relational reasoning in vector symbolic neural architectures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2204.07186, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Jérôme Durand-Lose, Hendrik Jan Hoogeboom, Natasa Jonoska |
Deterministic Non-cooperative Binding in Two-Dimensional Tile Assembly Systems Must Have Ultimately Periodic Paths. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2202.05165, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP BibTeX RDF |
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9 | Zhaoyang Chu, Shichao Liu 0002, Wen Zhang 0008 |
Hierarchical Graph Representation Learning for the Prediction of Drug-Target Binding Affinity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2203.11458, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Yang Zhang, Gengmo Zhou, Zhewei Wei, Hongteng Xu |
Predicting Protein-Ligand Binding Affinity via Joint Global-Local Interaction Modeling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2209.13014, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Dmitri A. Rachkovskij, Denis Kleyko |
Recursive Binding for Similarity-Preserving Hypervector Representations of Sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2201.11691, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP BibTeX RDF |
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9 | Elizaveta Vinogradova, Karina Pats, Ferdinand Molnár, Siamac Fazli |
MLT-LE: predicting drug-target binding affinity with multi-task residual neural networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
CoRR ![In: CoRR abs/2209.06274, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Xiaoxiao You, Xiuzhen Hu, Zhenxing Feng, Ziyang Wang, Sixi Hao, Caiyun Yang |
Recognizing protein-metal ion ligands binding residues by random forest algorithm with adding orthogonal properties. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 98, pp. 107693, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Shohei Yamaguchi, Haruka Nakashima, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu |
Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 100, pp. 107744, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Debarati Paul, Premananda Basak, Shubhra Ghosh Dastidar |
Remote communication between unstructured and structured regions of Bcl-2 tunes its ligand binding capacity: Mechanistic insights. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 100, pp. 107736, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Magdalena Slusarz |
Molecular insights into the mechanism of sugar-modified enkephalin binding to opioid receptors. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 101, pp. 107783, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Annemarie Danielsson, Malgorzata M. Kogut, Martyna Maszota-Zieleniak, Pradeep Chopra, Geert-Jan Boons, Sergey A. Samsonov |
Molecular dynamics-based descriptors of 3-O-Sulfated Heparan sulfate as contributors of protein binding specificity. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 99, pp. 107716, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Ekampreet Singh, Rajat Kumar Jha, Rameez Jabeer Khan, Ankit Kumar, Monika Jain, Jayaraman Muthukumaran, Amit Kumar Singh |
A computational essential dynamics approach to investigate structural influences of ligand binding on Papain like protease from SARS-CoV-2. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 99, pp. 107721, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Soundarya Priya Alexandar, Ragothaman Yennamalli, Venkatasubramanian Ulaganathan |
Coarse grained modelling highlights the binding differences in the two different allosteric sites of the Human Kinesin EG5 and its implications in inhibitor design. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 99, pp. 107708, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Thitiya Boonma, Nattharuja Soikudrua, Bodee Nutho, Thanyada Rungrotmongkol, Nadtanet Nunthaboot |
Insights into binding molecular mechanism of hemagglutinin H3N2 of influenza virus complexed with arbidol and its derivative: A molecular dynamics simulation perspective. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 101, pp. 107764, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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9 | Muhammad Mazhar Fareed, Sana Ullah, Shan Aziz, Todd Axel Johnsen, Sergey Shityakov |
In-silico analysis of non-synonymous single nucleotide polymorphisms in human β-defensin type 1 gene reveals their impact on protein-ligand binding sites. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Comput. Biol. Chem. ![In: Comput. Biol. Chem. 98, pp. 107669, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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