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Found 16824 publication records. Showing 16824 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Antti Häkkinen, Kaiyang Zhang, Amjad Alkodsi, Noora Andersson, Erdogan Pekcan Erkan, Jun Dai, Katja Kaipio, Tarja Lamminen, Naziha Mansuri, Kaisa Huhtinen, Anna Vähärautio, Olli Carpén, Johanna Hynninen, Sakari Hietanen, Rainer Lehtonen, Sampsa Hautaniemi |
PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(18), pp. 2882-2888, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Nils Kurzawa, André Mateus 0002, Mikhail M. Savitski |
Rtpca: an R package for differential thermal proximity coaggregation analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(3), pp. 431-433, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Nima Mousavi, Jonathan Margoliash, Neha Pusarla, Shubham Saini, Richard Yanicky, Melissa Gymrek |
TRTools: a toolkit for genome-wide analysis of tandem repeats. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(5), pp. 731-733, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Ruilin Li, Yosuke Tanigawa, Johanne M. Justesen, Jonathan Taylor, Trevor Hastie, Robert Tibshirani, Manuel A. Rivas |
Survival analysis on rare events using group-regularized multi-response Cox regression. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(23), pp. 4437-4443, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | René L. Warren, Inanç Birol |
HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(21), pp. 5271-5273, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Faezeh Bayat, Maxwell W. Libbrecht |
VSS: variance-stabilized signals for sequencing-based genomic signals. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(23), pp. 4383-4391, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Markku Kuismin, Mikko J. Sillanpää |
MCPeSe: Monte Carlo penalty selection for graphical lasso. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(5), pp. 726-727, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Bahar Alipanahi, Alan Kuhnle, Simon J. Puglisi, Leena Salmela, Christina Boucher |
Succinct dynamic de Bruijn graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(14), pp. 1946-1952, August 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Lukas Hübner, Alexey M. Kozlov, Demian Hespe, Peter Sanders 0001, Alexandros Stamatakis |
Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(22), pp. 4056-4063, November 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Meiling Liu, Yang Liu 0312, Michael C. Wu, Li Hsu, Qianchuan He |
A method for subtype analysis with somatic mutations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(1), pp. 50-56, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Sara Omranian, Angela Angeleska, Zoran Nikoloski |
PC2P: parameter-free network-based prediction of protein complexes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(1), pp. 73-81, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Alexey Markin, Oliver Eulenstein |
Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(22), pp. 4064-4074, November 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Noelia Ferruz, Jakob Noske, Birte Höcker |
Protlego: a Python package for the analysis and design of chimeric proteins. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(19), pp. 3182-3189, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Linjing Liu, Xingjian Chen, Ka-Chun Wong |
Early cancer detection from genome-wide cell-free DNA fragmentation via shuffled frog leaping algorithm and support vector machine. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(19), pp. 3099-3105, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | |
LFQC: A lossless compression algorithm for FASTQ files. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(22-23), pp. 5566, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Aditya Gorla, Brandon Jew, Luke Zhang, Jae Hoon Sul |
xGAP: a python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(1), pp. 9-16, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Mikolaj Rogalski, Piotr Zdankowski, Maciej Trusiak |
FPM app: an open-source MATLAB application for simple and intuitive Fourier ptychographic reconstruction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(20), pp. 3695-3696, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Canhong Wen, Hailong Ba, Wenliang Pan, Meiyan Huang |
Co-sparse reduced-rank regression for association analysis between imaging phenotypes and genetic variants. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(21), pp. 5214-5222, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Sunjoo Bang, Jong Ho Jhee, Hyunjung Shin |
Polypharmacy side-effect prediction with enhanced interpretability based on graph feature attention network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(18), pp. 2955-2962, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Nuwan Goonasekera, Alexandru Mahmoud, John Chilton, Enis Afgan |
GalaxyCloudRunner: enhancing scalable computing for Galaxy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(12), pp. 1763-1765, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Junyi Xin, Yanling Wu, Shuai Ben, Shuwei Li, Haiyan Chu, Meilin Wang, Molin Wang, Mingyang Song, Mulong Du, Zhengdong Zhang |
CoSMeD: a user-friendly web server to estimate 5-year survival probability of left-sided and right-sided colorectal cancer patients using molecular data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(1), pp. 278-281, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Kyuto Sonehara, Yukinori Okada |
Obelisc: an identical-by-descent mapping tool based on SNP streak. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(24), pp. 5567-5570, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Chenxin Li, Mingxuan Gao, Wenxian Yang, Chuanqi Zhong, Rongshan Yu |
Diamond: a multi-modal DIA mass spectrometry data processing pipeline. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(2), pp. 265-267, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Felix Stiehler, Marvin Steinborn, Stephan Scholz, Daniela Dey, Andreas P. M. Weber, Alisandra K. Denton |
Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(22-23), pp. 5291-5298, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Markus Ekvall, Michael Höhle, Lukas Käll |
Parallelized calculation of permutation tests. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(22-23), pp. 5392-5397, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Valentine U. Nlebedim, Roy R. Chaudhuri, Kevin B. Walters |
Probabilistic identification of bacterial essential genes via insertion density using TraDIS data with Tn5 libraries. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(23), pp. 4343-4349, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Gustavo Hernandez-Mejia, Esteban A. Hernández-Vargas |
Uncovering antibody cross-reaction dynamics in influenza A infections. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(2), pp. 229-235, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Qi Yan 0008, Erick Forno, Juan C. Celedón, Wei Chen 0074, Daniel E. Weeks |
CHIT: an allele-specific method for testing the association between molecular quantitative traits and phenotype-genotype interaction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(24), pp. 4764-4770, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Juan Pablo Prada, Gaby Wangorsch, Kirstin Kucka, Isabell Lang, Thomas Dandekar, Harald Wajant |
A systems-biology model of the tumor necrosis factor (TNF) interactions with TNF receptor 1 and 2. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(5), pp. 669-676, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Guillermo Dufort y Álvarez, Gadiel Seroussi, Pablo Smircich, José Sotelo-Silveira, Idoia Ochoa, Álvaro Martín |
RENANO: a REference-based compressor for NANOpore FASTQ files. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(24), pp. 4862-4864, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Christoffer Flensburg, Alicia Oshlack, Ian J. Majewski |
Detecting copy number alterations in RNA-Seq using SuperFreq. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(22), pp. 4023-4032, November 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Vishnuvardhan Mahamkali, Tim McCubbin, Moritz Emanuel Beber, Elad Noor, Esteban Marcellin, Lars Keld Nielsen |
multiTFA: a Python package for multi-variate thermodynamics-based flux analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(18), pp. 3064-3066, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Yue Yu, Kexin Huang, Chao Zhang 0014, Lucas M. Glass, Jimeng Sun 0001, Cao Xiao |
SumGNN: multi-typed drug interaction prediction via efficient knowledge graph summarization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(18), pp. 2988-2995, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Zachary Prince, Deeptanshu Jha, Rahul Singh |
DUI: the drug use insights web server. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(24), pp. 4895-4897, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Ahmad Borzou, Rovshan G. Sadygov |
A novel estimator of the interaction matrix in Graphical Gaussian Model of omics data using the entropy of non-equilibrium systems. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(6), pp. 837-844, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Ziyang Wei, Shuqin Zhang |
CALLR: a semi-supervised cell-type annotation method for single-cell RNA sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(Supplement), pp. 51-66, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Zhe Cui, Ya Cui, Tianyi Zang, Yadong Wang |
interacCircos: an R package based on JavaScript libraries for the generation of interactive circos plots. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(20), pp. 3642-3644, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Zongli Xu, Changchun Xie, Jack A. Taylor, Liang Niu |
ipDMR: identification of differentially methylated regions with interval P-values. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(5), pp. 711-713, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Rodrigo Santibañez, Daniel Garrido, Alberto J. M. Martin |
Atlas: automatic modeling of regulation of bacterial gene expression and metabolism using rule-based languages. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(22-23), pp. 5473-5480, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Jianzhao Gao, Shuangjia Zheng, Mengting Yao, Peikun Wu |
Precise estimation of residue relative solvent accessible area from Cα atom distance matrix using a deep learning method. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(1), pp. 94-98, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Benjamin D. Redelings |
Bali-Phy version 3: model-based co-estimation of alignment and phylogeny. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(18), pp. 3032-3034, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Kodai Minoura, Ko Abe, Yuka Maeda, Hiroyoshi Nishikawa, Teppei Shimamura |
CYBERTRACK2.0: zero-inflated model-based cell clustering and population tracking method for longitudinal mass cytometry data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(11), pp. 1632-1634, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Yue Wang 0060, Kunqi Chen, Zhen Wei, Frans Coenen, Jionglong Su, Jia Meng |
MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(9), pp. 1285-1291, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Guilherme F. Bottino, Allan J. R. Ferrari, Fábio C. Gozzo, Leandro Martínez |
Structural discrimination analysis for constraint selection in protein modeling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(21), pp. 3766-3773, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Tobias Pietzsch, Lorenzo Duso, Christoph Zechner |
Compartor: a toolbox for the automatic generation of moment equations for dynamic compartment populations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(17), pp. 2782-2784, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Fatemeh Yassaee Meybodi, Changiz Eslahchi |
Predicting anti-cancer drug response by finding optimal subset of drugs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(23), pp. 4509-4516, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Matteo Borella, Graziano Martello, Davide Risso, Chiara Romualdi |
PsiNorm: a scalable normalization for single-cell RNA-seq data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(1), pp. 164-172, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Jodie Ashford, João Reis-Cunha, Igor Lobo, Francisco Pereira Lobo, Felipe Campelo |
Organism-specific training improves performance of linear B-cell epitope prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(24), pp. 4826-4834, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
|
1 | Tuukka Norri, Bastien Cazaux, Saska Dönges, Daniel Valenzuela 0001, Veli Mäkinen |
Founder reconstruction enables scalable and seamless pangenomic analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(24), pp. 4611-4619, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Hyejin Kang, Hongryul Ahn, Kyuri Jo, Minsik Oh, Sun Kim |
mirTime: identifying condition-specific targets of microRNA in time-series transcript data using Gaussian process model and spherical vector clustering. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(11), pp. 1544-1553, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Stefano Mangiola, Maria A. Doyle, Anthony T. Papenfuss |
Interfacing Seurat with the R tidy universe. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(22), pp. 4100-4107, November 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | John A. Rhodes, Hector Baños, Jonathan D. Mitchell, Elizabeth S. Allman |
MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(12), pp. 1766-1768, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Chuming Chen, Karen E. Ross, Sachin Gavali, Julie E. Cowart, Cathy H. Wu |
COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(23), pp. 4597-4598, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Prashant Singh, Fredrik Wrede, Andreas Hellander |
Scalable machine learning-assisted model exploration and inference using Sciope. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 37(2), pp. 279-281, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Xiyu Peng, Karin S. Dorman |
AmpliCI: a high-resolution model-based approach for denoising Illumina amplicon data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(21), pp. 5151-5158, 2021. The full citation details ...](Pics/full.jpeg) |
2021 |
DBLP DOI BibTeX RDF |
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1 | Sameh K. Mohamed, Vít Novácek, Aayah Nounu |
Discovering protein drug targets using knowledge graph embeddings. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(2), pp. 603-610, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Junwei Han, Xudong Han, Qingfei Kong, Liang Cheng 0006 |
psSubpathway: a software package for flexible identification of phenotype-specific subpathways in cancer progression. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(7), pp. 2303-2305, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Olga Mineeva, Mateo Rojas-Carulla, Ruth E. Ley, Bernhard Schölkopf, Nicholas D. Youngblut |
DeepMAsED: evaluating the quality of metagenomic assemblies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(10), pp. 3011-3017, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Sebastian J. Teran Hidalgo, Mengyun Wu, Shuangge Ma |
NCutYX: a package for clustering analysis of multilayer omics data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(6), pp. 1976-1977, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Matteo P. Ferla, Alistair T. Pagnamenta, David R. Damerell, Jenny C. Taylor, Brian D. Marsden |
MichelaNglo: sculpting protein views on web pages without coding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(10), pp. 3268-3270, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Sandeep Manandhar, Patrick Bouthemy, Erik Welf, Gaudenz Danuser, Philippe Roudot, Charles Kervrann |
3D flow field estimation and assessment for live cell fluorescence microscopy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(5), pp. 1317-1325, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Sergii Domanskyi, Carlo Piermarocchi, George Mias |
PyIOmica: longitudinal omics analysis and trend identification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(7), pp. 2306-2307, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Peiliang Lou, Antonio Jimeno-Yepes, Zai Zhang, Qinghua Zheng, Xiangrong Zhang, Chen Li 0011 |
BioNorm: deep learning-based event normalization for the curation of reaction databases. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(2), pp. 611-620, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Yang Zhang 0042, Yunxuan Xiao, Muyu Yang, Jian Ma 0004 |
Cancer mutational signatures representation by large-scale context embedding. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(Supplement-1), pp. i309-i316, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Marina Marcet-Houben, Toni Gabaldón |
EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(4), pp. 1265-1266, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Wilson H. McKerrow, David Fenyö |
L1EM: a tool for accurate locus specific LINE-1 RNA quantification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(4), pp. 1167-1173, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Zongyang Du, Shuo Pan, Qi Wu 0016, Zhenling Peng, Jianyi Yang |
CATHER: a novel threading algorithm with predicted contacts. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(7), pp. 2119-2125, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Ilya M. Flyamer, Robert S. Illingworth, Wendy A. Bickmore |
Coolpup.py: versatile pile-up analysis of Hi-C data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(10), pp. 2980-2985, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Pablo Vicente-Munuera, Pedro Gómez-Gálvez, Robert J. Tetley, Cristina Forja, Antonio Tagua, Marta Letrán, Melda Tozluoglu, Yanlan Mao, Luis M. Escudero |
EpiGraph: an open-source platform to quantify epithelial organization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(4), pp. 1314-1316, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Yan Song, Haixu Tang, Haoyu Zhang, Qin Zhang 0001 |
Overlap detection on long, error-prone sequencing reads via smooth q-gram. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(19), pp. 4838-4845, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Marco Oliva, Franco Milicchio, Kaden King, Grace Benson, Christina Boucher, Mattia Prosperi, Inanç Birol |
Portable nanopore analytics: are we there yet? ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(16), pp. 4399-4405, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Yiwei Cao, Sang-Jun Park, Akul Y. Mehta, Richard D. Cummings, Wonpil Im |
GlyMDB: Glycan Microarray Database and analysis toolset. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(8), pp. 2438-2442, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Hui-Zeng Sun, Mi Zhou, Ou Wang, Yanhong Chen, Jian-Xin Liu, Le Luo Guan |
Multi-omics reveals functional genomic and metabolic mechanisms of milk production and quality in dairy cows. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(8), pp. 2530-2537, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Nina Baumgarten, Florian Schmidt 0003, Marcel H. Schulz |
Improved linking of motifs to their TFs using domain information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(6), pp. 1655-1662, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Zhe Cui 0001, Jayaram Kancherla, Kyle W. Chang, Niklas Elmqvist, Héctor Corrada Bravo |
Proactive visual and statistical analysis of genomic data in Epiviz. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(7), pp. 2195-2201, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Yoonji Lee, Jordan M. Baumhardt, Jimin Pei, Yuh Min Chook, Nick V. Grishin |
pCRM1exportome: database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(3), pp. 961-963, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin 0001 |
GraphBin: refined binning of metagenomic contigs using assembly graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(11), pp. 3307-3313, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Martin R. Smith |
Information theoretic generalized Robinson-Foulds metrics for comparing phylogenetic trees. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(20), pp. 5007-5013, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Henry E. Pratt, Zhiping Weng |
LogoJS: a Javascript package for creating sequence logos and embedding them in web applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(11), pp. 3573-3575, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Oscar Franzén, Johan L. M. Björkegren |
alona: a web server for single-cell RNA-seq analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(12), pp. 3910-3912, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | N. Suhas Jagannathan, Mario O. Ihsan, Xiao Xuan Kin, Roy E. Welsch, Marie-Véronique Clément, Lisa Tucker-Kellogg |
Transcompp: understanding phenotypic plasticity by estimating Markov transition rates for cell state transitions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(9), pp. 2813-2820, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Takuya Aramaki, Romain Blanc-Mathieu, Hisashi Endo, Koichi Ohkubo, Minoru Kanehisa, Susumu Goto, Hiroyuki Ogata |
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(7), pp. 2251-2252, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Jarkko Toivonen, Pratyush K. Das, Jussi Taipale, Esko Ukkonen |
MODER2: first-order Markov modeling and discovery of monomeric and dimeric binding motifs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(9), pp. 2690-2696, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Chencheng Xu, Qiao Liu, Jianyu Zhou, Minzhu Xie, Jianxing Feng, Tao Jiang 0001 |
Quantifying functional impact of non-coding variants with multi-task Bayesian neural network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(5), pp. 1397-1404, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Wentao Shi, Jeffrey Mitchell Lemoine, Abd-El-Monsif A. Shawky, Manali Singha, Limeng Pu, Shuangyan Yang, J. Ramanujam, Michal Brylinski |
BionoiNet: ligand-binding site classification with off-the-shelf deep neural network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(10), pp. 3077-3083, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Mohamed Chaabane, Robert M. Williams, Austin T. Stephens, Juw Won Park |
circDeep: deep learning approach for circular RNA classification from other long non-coding RNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(1), pp. 73-80, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Christopher J. Neely, Elaina D. Graham, Benjamin J. Tully |
MetaSanity: an integrated microbial genome evaluation and annotation pipeline. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(15), pp. 4341-4344, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Xiaoqiang Huang, Wei Zheng, Robin Pearce, Yang Zhang 0040 |
SSIPe: accurately estimating protein-protein binding affinity change upon mutations using evolutionary profiles in combination with an optimized physical energy function. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(8), pp. 2429-2437, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | José Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Jyoti Dalal, Gabriel Renaud, Anders Albrechtsen, Rasmus Nielsen, Anna-Sapfo Malaspinas |
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(3), pp. 828-841, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Andrea Calabria, Stefano Beretta 0001, Ivan Merelli, Giulio Spinozzi, Stefano Brasca, Yuri Pirola, Fabrizio Benedicenti, Erika Tenderini, Paola Bonizzoni, Luciano Milanesi, Eugenio Montini |
γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(5), pp. 1622-1624, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Jayvardan S. Naidu, Justin Delano, Scott Mathews, Predrag Radivojac |
An examination of citation-based impact of the computational biology conferences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(9), pp. 2958-2962, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Likun Huang, Weiqi Tang, Suhong Bu, Weiren Wu |
BRM: a statistical method for QTL mapping based on bulked segregant analysis by deep sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(7), pp. 2150-2156, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Akio Onogi |
Connecting mathematical models to genomes: joint estimation of model parameters and genome-wide marker effects on these parameters. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(10), pp. 3169-3176, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Mei Zuo, Yang Zhang 0057 |
Dataset-aware multi-task learning approaches for biomedical named entity recognition. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(15), pp. 4331-4338, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Mengshi Zhou, Chunlei Zheng, Rong Xu |
Combining phenome-driven drug-target interaction prediction with patients' electronic health records-based clinical corroboration toward drug discovery. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(Supplement-1), pp. i436-i444, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Daniele Mercatelli, Gonzalo Lopez-Garcia, Federico M. Giorgi |
corto: a lightweight R package for gene network inference and master regulator analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(12), pp. 3916-3917, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Zeynep Baskurt, Scott Mastromatteo, Jiafen Gong, Richard F. Wintle, Stephen W. Scherer, Lisa J. Strug |
VikNGS: a C++ variant integration kit for next generation sequencing association analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(4), pp. 1283-1285, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Weiwei Zhang, Ziyi Li, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng |
Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(7), pp. 2017-2024, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R. C. Rogers, Jukka Corander, Rob J. L. Willems, Anita C. Schürch |
gplas: a comprehensive tool for plasmid analysis using short-read graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(12), pp. 3874-3876, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
DBLP DOI BibTeX RDF |
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1 | Niall Beard, Finn Bacall, Aleksandra Nenadic, Milo Thurston, Carole A. Goble, Susanna-Assunta Sansone, Teresa K. Attwood |
TeSS: a platform for discovering life-science training opportunities. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 36(10), pp. 3290-3291, 2020. The full citation details ...](Pics/full.jpeg) |
2020 |
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