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Found 16824 publication records. Showing 16824 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Leonard Dervishi, Wenbiao Li, Anisa Halimi, Xiaoqian Jiang, Jaideep Vaidya, Erman Ayday |
Privacy preserving identification of population stratification for collaborative genomic research. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 168-176, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Ling Luo 0001, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen 0001, Zhiyong Lu |
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Alexandru Oarga, Bridget Bannerman, Jorge Júlvez |
CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Dan Guo, Melanie Christine Föll, Kylie A. Bemis, Olga Vitek |
A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jarno N. Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, Simon J. Puglisi |
Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 260-269, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Mengbo Li, Gordon K. Smyth |
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Bastian Pfeifer, Hryhorii Chereda, Roman Martin, Anna Saranti, Sandra Clemens, Anne-Christin Hauschild, Tim Beißbarth, Andreas Holzinger, Dominik Heider |
Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(10), October 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Renming Liu, Matthew J. Hirn, Arjun Krishnan |
Accurately modeling biased random walks on weighted networks using node2vec+. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Huixi Zou, Tianli Sun, Bangqun Jin, Shengqin Wang |
sBGC-hm: an atlas of secondary metabolite biosynthetic gene clusters from the human gut microbiome. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Déborah Caucheteur, Zoë May Pendlington, Paola Roncaglia, Julien Gobeill, Luc Mottin, Nicolas Matentzoglu, Donat Agosti, David Osumi-Sutherland, Helen E. Parkinson, Patrick Ruch |
COVoc and COVTriage: novel resources to support literature triage. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Anna Nadtochiy, Peter Luu, Scott E. Fraser, Thai V. Truong |
VoDEx: a Python library for time annotation and management of volumetric functional imaging data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(9), September 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Artyom A. Egorov, Gemma Catherine Atkinson |
uORF4u: a tool for annotation of conserved upstream open reading frames. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Thomas Büchler, Jannik Olbrich, Enno Ohlebusch |
Efficient short read mapping to a pangenome that is represented by a graph of ED strings. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Kerr Ding, Sheng Wang 0012, Yunan Luo |
Supervised biological network alignment with graph neural networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 465-474, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Martin Larralde, Georg Zeller |
PyHMMER: a Python library binding to HMMER for efficient sequence analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Rockwell J. Weiner, Chirag M. Lakhani, David A. Knowles, Gamze Gürsoy |
LDmat: efficiently queryable compression of linkage disequilibrium matrices. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Edgar E. Robles, Ye Jin, Padhraic Smyth, Richard H. Scheuermann, Jack D. Bui, Huan-You Wang, Jean Oak, Yu Qian |
A cell-level discriminative neural network model for diagnosis of blood cancers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(10), October 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jaromir Sant, Paul A. Jenkins, Jere Koskela, Dario Spanò |
EWF: simulating exact paths of the Wright-Fisher diffusion. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Haoting Zhang, Carl Henrik Ek, Magnus Rattray, Marta Milo |
SynBa: improved estimation of drug combination synergies with uncertainty quantification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 121-130, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | John C. Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A Mathé |
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Heather Marriott, Renata Kabiljo, Ahmad Al Khleifat, Richard J. B. Dobson, Ammar Al-Chalabi, Alfredo Iacoangeli |
DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Michal Zurkowski, Maciej Antczak, Marta Szachniuk |
High-quality, customizable heuristics for RNA 3D structure alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Piyumi R. Amarasinghe, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arthur M. Lesk, Arun Siddharth Konagurthu |
Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 357-367, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Shaojun Pan, Xing-Ming Zhao, Luís Pedro Coelho |
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 21-29, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Caleb A. Class, Caiden J. Lukan, Christopher A. Bristow, Kim-Anh Do |
Easy NanoString nCounter data analysis with the NanoTube. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Charles Tapley Hoyt, Amelia L. Hoyt, Benjamin M. Gyori |
Prediction and curation of missing biomedical identifier mappings with Biomappings. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Karel J. van der Weg, Holger Gohlke |
TopEnzyme: a framework and database for structural coverage of the functional enzyme space. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jae-Won Lee, Jong-Hyun Won, Seonggwang Jeon, Yujin Choo, Yubin Yeon, Jin-Seon Oh, Minsoo Kim, Seonhwa Kim, InSuk Joung, Cheongjae Jang, Sung Jong Lee, Tae Hyun Kim, Kyong Hwan Jin, Giltae Song, Eun-Sol Kim, Jejoong Yoo, Eunok Paek, Yung-Kyun Noh, Keehyoung Joo |
DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Emanuel Cunha, Davide Lagoa, José P. Faria, Filipe Liu, Christopher S. Henry, Oscar Días |
TranSyT, an innovative framework for identifying transport systems. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(8), August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Qian Wang, Zhiqiang Wei, Xiaotong Hu, Zhuoya Wang, Yujie Dong, Hao Liu |
Molecular generation strategy and optimization based on A2C reinforcement learning in de novo drug design. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(11), November 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Peishun Jiao, Beibei Wang, Xuan Wang, Bo Liu, Yadong Wang, Junyi Li |
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(10), October 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Siebren Frölich, Maarten van der Sande, Tilman Schäfers, Simon J. van Heeringen |
genomepy: genes and genomes at your fingertips. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Xiaokun Hong, Ningshan Li, Jiyang Lv, Yan Zhang, Jing Li 0107, Jian Zhang 0037, Hai-Feng Chen |
PTMint database of experimentally verified PTM regulation on protein-protein interaction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Yuxin Li, Xuhua Liu, Xueyan Jia, Tao Jiang, Jianghao Wu, Qianlong Zhang, Junhuai Li, Xiangning Li, Anan Li |
A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Omid Rohanian, Mohammadmahdi Nouriborji, Samaneh Kouchaki, David A. Clifton |
On the effectiveness of compact biomedical transformers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jian Cheng, Christian Maltecca, Paul M. Vanraden, Jeffrey R. O'Connell, Li Ma, Jicai Jiang |
SLEMM: million-scale genomic predictions with window-based SNP weighting. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Yao-zhong Zhang, Zeheng Bai, Seiya Imoto |
Investigation of the BERT model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(10), October 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Zhuoqing Fang, Xinyuan Liu, Gary Peltz |
GSEApy: a comprehensive package for performing gene set enrichment analysis in Python. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Luca R. Genz, Thomas Mulvaney, Sanjana Nair, Maya Topf |
PICKLUSTER: a protein-interface clustering and analysis plug-in for UCSF ChimeraX. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(10), October 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu |
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(9), September 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jiangshan Liang, Luchen Deng, Shize Chen, Yimin Wang, Zongcai Ruan, Lingli Zhang |
Vaa3D-x for cross-platform teravoxel-scale immersive exploration of multidimensional image data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Ping-Han Hsieh, Camila Miranda Lopes-Ramos, Manuela Zucknick, Geir Kjetil Sandve, Kimberly Glass, Marieke L. Kuijjer |
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(10), October 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Asmita Roy, Jun Chen, Xianyang Zhang |
A general framework for powerful confounder adjustment in omics association studies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(9), September 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jean-Pierre Borg, Jacques Colinge, Patrice Ravel |
Modular response analysis reformulated as a multilinear regression problem. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Sarah G. Ayton, Victor Treviño |
MuTATE - an R package for comprehensive multi-objective molecular modeling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(9), September 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Philip T. L. C. Clausen |
Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Martin C. Frith, Jim Shaw, John L. Spouge |
How to optimally sample a sequence for rapid analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu |
Accurate and efficient protein sequence design through learning concise local environment of residues. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Hanqing Zhao, Matthijs Leon Souilljee, Pavlos Pavlidis, Nikolaos Alachiotis 0001 |
Genome-wide scans for selective sweeps using convolutional neural networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 194-203, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Fernando Zhapa-Camacho, Maxat Kulmanov, Robert Hoehndorf |
mOWL: Python library for machine learning with biomedical ontologies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | |
Correction to: FASTRAL: improving scalability of phylogenomic analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Kaspar Märtens, Michele Bortolomeazzi, Lucia Montorsi, Jo Spencer, Francesca D. Ciccarelli, Christopher Yau |
Rarity: discovering rare cell populations from single-cell imaging data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Robin Paul, Jian Wang, Colleen Reilly, Edgar Sioson, Jaimin Patel, Gavriel Matt, Aleksandar Acic, Xin Zhou |
ppBAM: ProteinPaint BAM track for read alignment visualization and variant genotyping. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Yuansong Zeng, Zhuoyi Wei, Qianmu Yuan, Sheng Chen, Weijiang Yu, Yutong Lu, Jianzhao Gao, Yuedong Yang |
Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Andrea Mastropietro, Gianluca De Carlo, Aris Anagnostopoulos |
XGDAG: explainable gene-disease associations via graph neural networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(8), August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Jacob Morrison, Wanding Zhou, Benjamin K. Johnson, Hui Shen |
Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Jianmei Zhao, Fengcui Qian, Xuecang Li, Zhengmin Yu, Jiang Zhu, Rui Yu, Yue Zhao, Ke Ding, Yanyu Li, Yongsan Yang, Qi Pan, Jiaxin Chen, Chao Song, Qiuyu Wang, Jian Zhang, Guohua Wang, Chunquan Li 0002 |
CanMethdb: a database for genome-wide DNA methylation annotation in cancers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Rudolf T. Pillich, Jing Chen, Christopher Churas, Dylan Fong, Benjamin M. Gyori, Trey Ideker, Klas Karis, Sophie N. Liu, Keiichiro Ono, Alexander R. Pico, Dexter Pratt |
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño |
PATO: genome-wide prediction of lncRNA-DNA triple helices. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Abdul Rehman Khan, Marcel J. T. Reinders, Indu Khatri |
Determining epitope specificity of T-cell receptors with transformers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(11), November 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Sergey Vilov, Matthias Heinig |
DeepSom: a CNN-based approach to somatic variant calling in WGS samples without a matched normal. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Eric S. Davis, Wancen Mu, Stuart Lee, Mikhail G. Dozmorov, Michael I. Love, Douglas H. Phanstiel |
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Xiaojing Wu, Mingfei Han 0001, Xinyu Song 0002, Song He, Xiaochen Bo, Yunping Zhu |
COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Zhenhuan Feng, Peiyang Fang, Hui Zheng, Xiaofei Zhang |
DEP2: an upgraded comprehensive analysis toolkit for quantitative proteomics data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(8), August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Sehi Park, Mobeen Ur Rehman, Farman Ullah, Hilal Tayara, Kil To Chong 0001 |
iCpG-Pos: an accurate computational approach for identification of CpG sites using positional features on single-cell whole genome sequence data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(8), August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Yan Zhu, Yuhuan Zhou, Yang Liu 0039, Xuan Wang, Junyi Li |
SLGNN: synthetic lethality prediction in human cancers based on factor-aware knowledge graph neural network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Nelle Varoquaux, William S. Noble, Jean-Philippe Vert |
Inference of 3D genome architecture by modeling overdispersion of Hi-C data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Leopold Weidner, Daniel Hemmler, Michael Rychlik, Philippe Schmitt-Kopplin |
DBDIpy: a Python library for processing of untargeted datasets from real-time plasma ionization mass spectrometry. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Jin Xu, Jessie Jiang, Herbert M. Sauro |
SBMLDiagrams: a python package to process and visualize SBML layout and render. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Daoyi Huang, Jianping Jiang, Tingting Zhao, Shengnan Wu, Pin Li, Yongfen Lyu, Jincai Feng, Mingyue Wei, Zhixing Zhu, Jianlei Gu, Yongyong Ren, Guangjun Yu, Hui Lu 0004 |
diseaseGPS: auxiliary diagnostic system for genetic disorders based on genotype and phenotype. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(9), September 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Van-Giang Trinh, Belaid Benhamou, Thomas A. Henzinger, Samuel Pastva |
Trap spaces of multi-valued networks: definition, computation, and applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 513-522, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | |
Correction to: Joint registration of multiple point clouds for fast particle fusion in localization microscopy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(8), August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
|
1 | Kristiina Ausmees, Carl Nettelblad |
Achieving improved accuracy for imputation of ancient DNA. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Sudeep Sahadevan, Thileepan Sekaran, Nadia Ashaf, Marko Fritz, Matthias W. Hentze, Wolfgang Huber, Thomas Schwarzl |
htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Anjali Silva, Xiaoke Qin, Steven J. Rothstein, Paul D. McNicholas, Sanjeena Subedi |
Finite mixtures of matrix variate Poisson-log normal distributions for three-way count data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Vladimir Gligorijevic, Satu Mustjoki, Richard Bonneau, Markus Heinonen, Harri Lähdesmäki |
TCRconv: predicting recognition between T cell receptors and epitopes using contextualized motifs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Anton Zhiyanov, Narek Engibaryan, Stepan A. Nersisyan, Maxim U. Shkurnikov, Alexander G. Tonevitsky |
Differential co-expression network analysis with DCoNA reveals isomiR targeting aberrations in prostate cancer. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Jialun Wu, Yuxin Dong, Zeyu Gao 0001, Tieliang Gong, Chen Li 0011 |
Dual Attention and Patient Similarity Network for drug recommendation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Xiang Li, Qian Shi, Ke Chen, Mingfu Shao |
Seeding with minimized subsequence. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(Supplement-1), pp. 232-241, 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Yi Fang, Xiaoyong Pan, Hong-Bin Shen |
De novodrug design by iterative multiobjective deep reinforcement learning with graph-based molecular quality assessment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Ziqiao Zhang, Ailin Xie, Jihong Guan, Shuigeng Zhou |
Molecular property prediction by semantic-invariant contrastive learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(8), August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Saleh Riahi, Jae Hyeon Lee, Taylor Sorenson, Shuai Wei, Sven Jager, Reza Olfati-Saber, Yanfeng Zhou, Anna Park, Maria Wendt, Hervé Minoux, Yu Qiu |
Surface ID: a geometry-aware system for protein molecular surface comparison. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Yi Liu 0058, Benjamin L. Elsworth, Tom R. Gaunt |
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | João Paulo Pereira Zanetti, Lucas Peres Oliveira, Leonid Chindelevitch, João Meidanis |
Generalizations of the genomic rank distance to indels. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(3), March 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Marine Jeanmougin, Hans Petter Brodal, Heidi Dietrichson Pharo, Hege Marie Vedeld, Guro Elisabeth Lind |
PoDCall: positive droplet calling and normalization of droplet digital PCR DNA methylation data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Daniel T. Rademaker, Kevin J. van Geemen, Li C. Xue |
GradPose: a very fast and memory-efficient gradient descent-based tool for superimposing millions of protein structures from computational simulations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(8), August 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Trevor Manz, Sehi L'Yi, Nils Gehlenborg |
Gos: a declarative library for interactive genomics visualization in Python. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Giovanni Visonà, Diane Duroux, Lucas Miranda, Emese Sükei, Yiran Li, Karsten M. Borgwardt, Carlos G. Oliver |
Multimodal learning in clinical proteomics: enhancing antimicrobial resistance prediction models with chemical information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Zhili Qiao, Elle Barnes, Susannah Tringe, Daniel P. Schachtman, Peng Liu 0007 |
Poisson hurdle model-based method for clustering microbiome features. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Hui Yu, Limin Jiang, Chung-I Li, Scott Ness, Sara G. M. Piccirillo, Yan Guo |
Somatic mutation effects diffused over microRNA dysregulation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(9), September 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Yiwei Liu, Changhuo Yang, Hong-Dong Li, Jianxin Wang 0001 |
IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(9), September 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Xinyi Yu, Jiashun Xiao, Mingxuan Cai, Yuling Jiao, Xiang Wan, Jin Liu 0011, Can Yang 0002 |
PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Mingzhi Yuan, Ao Shen, Kexue Fu, Jiaming Guan, Yingfan Ma, Qin Qiao, Manning Wang |
ProteinMAE: masked autoencoder for protein surface self-supervised learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Elisabetta C. Sciacca, Salvatore Alaimo, Gianmarco Silluzio, Alfredo Ferro, Vito Latora, Costantino Pitzalis, Alfredo Pulvirenti, Myles J. Lewis |
DEGGs: an R package with shiny app for the identification of differentially expressed gene-gene interactions in high-throughput sequencing data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(4), April 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Kyriakos Soulios, Patrick Scheibe, Matthias Bernt, Jörg Hackermüller, Jana Schor |
deepFPlearn +: enhancing toxicity prediction across the chemical universe using graph neural networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Brendan S. McConnell, Matthew W. Parker |
Protein intrinsically disordered regions have a non-random, modular architecture. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Nathan Edwards, Christian Dillard, N. M. Prashant, Liu Hongyu, Mia Yang, Evgenia Ulianova, Anelia Horvath |
SCExecute: custom cell barcode-stratified analyses of scRNA-seq data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(1), January 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Xiaobin Zheng, Joseph R. Tran, Yixian Zheng |
CscoreTool-M infers 3D sub-compartment probabilities within cell population. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(5), May 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Yanlei Kang, Arne Elofsson, Yunliang Jiang, Weihong Huang, Minzhe Yu, Zhong Li |
AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(2), February 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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1 | Tudor Groza, Honghan Wu, Marcel E. Dinger, Daniel Danis, Coleman Hilton, Anita Bagley, Jon R. Davids, Ling Luo 0001, Zhiyong Lu, Peter N. Robinson |
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 39(12), December 2023. The full citation details ...](Pics/full.jpeg) |
2023 |
DBLP DOI BibTeX RDF |
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