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Found 16824 publication records. Showing 16824 according to the selection in the facets
Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Gabriele Pozzati, Wensi Zhu, Claudio Bassot, John Lamb, Petras Kundrotas, Arne Elofsson |
Limits and potential of combined folding and docking. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 954-961, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Takaho Tsuchiya, Hiroki Hori, Haruka Ozaki |
CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(21), pp. 4868-4877, October 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Huma Shehwana, Shwetha V. Kumar, James M. Melott, Mary A. Rohrdanz, Chris Wakefield, Zhenlin Ju, Doris R. Siwak, Yiling Lu, Bradley M. Broom, John N. Weinstein, Gordon B. Mills, Rehan Akbani |
RPPA SPACE: an R package for normalization and quantitation of Reverse-Phase Protein Array data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(22), pp. 5131-5133, November 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Yifu Lu, Zhuohan Yu, Yunhe Wang 0006, Zhiqiang Ma 0003, Ka-Chun Wong, Xiangtao Li |
GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(11), pp. 3020-3028, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Yang Bai, Yang Li 0106, Yu Shen, Mingyu Yang, Wentao Zhang, Bin Cui 0001 |
AutoDC: an automatic machine learning framework for disease classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(13), pp. 3415-3421, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Alexey Markin, Sanket Wagle, Tavis K. Anderson, Oliver Eulenstein |
RF-Net 2: fast inference of virus reassortment and hybridization networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2144-2152, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Joseph D. Romano, Trang T. Le, William G. La Cava, John T. Gregg, Daniel J. Goldberg, Praneel Chakraborty, Natasha L. Ray, Daniel S. Himmelstein, Weixuan Fu, Jason H. Moore |
PMLB v1.0: an open-source dataset collection for benchmarking machine learning methods. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 878-880, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Shunfu Mao, Yue Zhang 0024, Georg Seelig, Sreeram Kannan |
CellMeSH: probabilistic cell-type identification using indexed literature. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(5), pp. 1393-1402, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Hmrishav Bandyopadhyay, Zihao Deng, Leiting Ding, Sinuo Liu, Mostofa Rafid Uddin, Xiangrui Zeng, Sima Behpour, Min Xu 0009 |
Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 977-984, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Carlos A. Garcia-Prieto, Francisco Martínez-Jiménez, Alfonso Valencia, Eduard Porta-Pardo |
Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(12), pp. 3181-3191, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Vincent Ebert, Patrick Eiring, Dominic A. Helmerich, Rick Seifert, Markus Sauer, Sören Doose |
Convex hull as diagnostic tool in single-molecule localization microscopy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(24), pp. 5421-5429, December 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Téo Lemane, Rayan Chikhi, Pierre Peterlongo |
k mdiff, large-scale and user-friendly differential k-mer analyses. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(24), pp. 5443-5445, December 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Yuanwei Xu, Katrina Nash, Animesh Acharjee, Georgios V. Gkoutos |
CACONET: a novel classification framework for microbial correlation networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(6), pp. 1639-1647, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Pontus Eriksson, Nour-al-dain Marzouka, Gottfrid Sjödahl, Carina Bernardo, Fredrik Liedberg, Mattias Höglund |
A comparison of rule-based and centroid single-sample multiclass predictors for transcriptomic classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 1022-1029, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Anna Pedrola, Sebastià Franch-Expósito, Sara Lahoz, Roger Esteban-Fabró, Rodrigo Dienstmann, Laia Bassaganyas, Jordi Camps |
PCIG: a web-based application to explore immune-genomics interactions across cancer types. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2374-2376, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Chih-Hao Lu, Chih-Chieh Chen, Chin-Sheng Yu, Yen-Yi Liu, Jia-Jun Liu, Sung-Tai Wei, Yu-Feng Lin |
MIB2: metal ion-binding site prediction and modeling server. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(18), pp. 4428-4429, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Nicolas Serge Matthieu Robert, Fatih Sarigol, Elisabeth Zieger, Oleg Simakov |
SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(24), pp. 5434-5436, December 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Sebastien Lelong, Xinghua Zhou, Cyrus Afrasiabi, Zhongchao Qian, Marco Alvarado Cano, Ginger Tsueng, Jiwen Xin, Julia Mullen, Yao Yao 0007, Ricardo Avila, Greg Taylor, Andrew I. Su, Chunlei Wu |
BioThings SDK: a toolkit for building high-performance data APIs in biomedical research. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 2077-2079, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Deyou Tang, Yucheng Li, Daqiang Tan, Juan Fu, Yelei Tang, Jiabin Lin, Rong Zhao, Hongli Du, Zhongming Zhao |
KCOSS: an ultra-fast k-mer counter for assembled genome analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 933-940, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Sylvain Prigent 0004, Cesar Augusto Valades-Cruz, Ludovic Leconte, Jean Salamero, Charles Kervrann |
STracking: a free and open-source Python library for particle tracking and analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(14), pp. 3671-3673, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Vinod Kumar Singh, Rohan Misra, Steven C. Almo, Ulrich G. Steidl, Hannes E. Bülow, Deyou Zheng |
HSMotifDiscover: identification of motifs in sequences composed of non-single-letter elements. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(16), pp. 4036-4038, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Jaswinder Singh, Kuldip K. Paliwal, Thomas Litfin, Jaspreet Singh, Yaoqi Zhou |
Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred secondary structure and evolutionary-derived mutational coupling. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(16), pp. 3900-3910, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Chun-Chieh Liao, Po-Ying Fu, Chih-Wei Huang, Chia-Hsien Chuang, Yun Yen, Chung-Yen Lin, Shu-Hwa Chen |
MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2930-2931, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Ahmed A. Metwally, Tom Zhang, Si Wu, Ryan Kellogg, Wenyu Zhou, Kévin Contrepois, Hua Tang, Michael Snyder 0001 |
Robust identification of temporal biomarkers in longitudinal omics studies. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(15), pp. 3802-3811, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Antoine Moniot, Yann Guermeur, Sjoerd Jacob de Vries, Isaure Chauvot de Beauchêne |
ProtNAff: protein-bound Nucleic Acid filters and fragment libraries. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(16), pp. 3911-3917, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Yanfei Li, Chang Sun, Jin-Mao Wei 0001, Jian Liu |
Drug-Protein interaction prediction by correcting the effect of incomplete information in heterogeneous information. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(22), pp. 5073-5080, November 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Keita Iida, Jumpei Kondo, Johannes Nicolaus Wibisana, Masahiro Inoue, Mariko Okada |
ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(18), pp. 4330-4336, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Zongyang Du, Zhenling Peng, Jianyi Yang |
Toward the assessment of predicted inter-residue distance. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 962-969, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Yi-Pei Chen 0004, Laura B. Ferguson, Nihal A. Salem, George Zheng, R. Dayne Mayfield, Mohammed Eslami |
RNA Solutions: Synthesizing Information to Support Transcriptomics (RNASSIST). ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(2), pp. 397-403, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Ke Zhang, Chenxi Wang, Liping Sun, Jie Zheng 0002 |
Prediction of gene co-expression from chromatin contacts with graph attention network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(19), pp. 4457-4465, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Matthias Kirchler, Stefan Konigorski, Matthias Norden, Christian Meltendorf, Marius Kloft, Claudia Schurmann, Christoph Lippert |
transferGWAS: GWAS of images using deep transfer learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(14), pp. 3621-3628, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Pablo Monfort-Lanzas, Raphael Gronauer, Leonie Madersbacher, Christoph Schatz, Dietmar Rieder, Hubert Hackl |
MIO: microRNA target analysis system for immuno-oncology. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(14), pp. 3665-3667, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Ángel Rodríguez-Cerro, Sergio Sancho, Miriam Rodríguez, Miguel A. Gamón, Léna Guitou, Rafael J. Martínez, Javier Buceta |
ANISE: an application to design mechanobiology simulations of planar epithelia. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(17), pp. 4246-4247, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Aleksandra Gruca, Joanna Henzel, Iwona Kostorz, Tomasz Steclik, Lukasz Wróbel, Marek Sikora |
MAINE: a web tool for multi-omics feature selection and rule-based data exploration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(6), pp. 1773-1775, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Yoann Dufresne, Téo Lemane, Pierre Marijon, Pierre Peterlongo, Amatur Rahman, Marek Kokot, Paul Medvedev, Sebastian Deorowicz, Rayan Chikhi |
The K-mer File Format: a standardized and compact disk representation of sets of k-mers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(18), pp. 4423-4425, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Arbel D. Tadmor, Rob Phillips |
MCRL: using a reference library to compress a metagenome into a non-redundant list of sequences, considering viruses as a case study. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 631-647, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Ryohei Eguchi, Momoko Hamano, Michio Iwata, Toru Nakamura, Shinya Oki, Yoshihiro Yamanishi |
TRANSDIRE: data-driven direct reprogramming by a pioneer factor-guided trans-omics approach. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2839-2846, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Ye Wang, Li Chen |
DeepPerVar: a multi-modal deep learning framework for functional interpretation of genetic variants in personal genome. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(24), pp. 5340-5351, December 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Michal Karlicki, Stanislaw Antonowicz, Anna Karnkowska |
Tiara: deep learning-based classification system for eukaryotic sequences. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(2), pp. 344-350, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Jakub Wiedemann, Jacek Kaczor, Maciej Milostan, Tomasz Zok, Jacek Blazewicz, Marta Szachniuk, Maciej Antczak |
RNAloops: a database of RNA multiloops. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(17), pp. 4200-4205, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Seth W. Cheetham, Michaela Kindlova, Adam D. Ewing |
Methylartist: tools for visualizing modified bases from nanopore sequence data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(11), pp. 3109-3112, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
|
1 | Zuguang Gu, Daniel Hübschmann |
spiralize: an R package for visualizing data on spirals. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(5), pp. 1434-1436, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Rory Munro, Roberto Santos 0001, Alexander Payne, Teri Forey, Solomon Osei, Nadine Holmes, Matthew Loose |
minoTour, real-time monitoring and analysis for nanopore sequencers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 1133-1135, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Raj S. Roy, Farhan Quadir, Elham Soltanikazemi, Jianlin Cheng |
A deep dilated convolutional residual network for predicting interchain contacts of protein homodimers. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 1904-1910, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Maksim V. Shegay, Vytas K. Svedas, Vladimir V. Voevodin, Dmitry A. Suplatov, Nina N. Popova |
Guide tree optimization with genetic algorithm to improve multiple protein 3D-structure alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 985-989, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Madalina Ciortan, Matthieu Defrance |
GNN-based embedding for clustering scRNA-seq data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 1037-1044, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Seyedeh Shaghayegh Sadeghi, Jianguo Lu, Alioune Ngom |
A network-based drug repurposing method via non-negative matrix factorization. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(5), pp. 1369-1377, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Chao Zhang 0055, Siavash Mirarab |
ASTRAL-Pro 2: ultrafast species tree reconstruction from multi-copy gene family trees. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(21), pp. 4949-4950, October 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Lenore Pipes, Rasmus Nielsen |
AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 663-670, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Mateusz Chilinski, Dariusz Plewczynski |
ConsensuSV - from the whole-genome sequencing data to the complete variant list. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(24), pp. 5440-5442, December 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Adam C. Knapp, Luis Sordo Vieira, Reinhard C. Laubenbacher, Julia Chifman |
SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2369-2370, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Lulu Zhang, Xiao Liu, Xiaoxiang Chen, Antony R. Warden, Youyi Yu, Baozhen Huang, Xianting Ding |
SCANCell reveals diverse inter-cluster interaction patterns in systemic lupus erythematosus across the disease spectrum. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(5), pp. 1361-1368, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Andrew J. Holbrook, Xiang Ji, Marc A. Suchard |
From viral evolution to spatial contagion: a biologically modulated Hawkes model. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 1846-1856, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Antoine Bodein, Marie-Pier Scott-Boyer, Olivier Périn, Kim-Anh Lê Cao, Arnaud Droit |
timeOmics: an R package for longitudinal multi-omics data integration. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(2), pp. 577-579, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Huanyu Tao, Xuejun Zhao, Keqiong Zhang, Peicong Lin, Sheng-You Huang |
Docking cyclic peptides formed by a disulfide bond through a hierarchical strategy. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(17), pp. 4109-4116, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | James M. Ferguson, Hasindu Gamaarachchi, Thanh Nguyen, Alyne Gollon, Stephanie Tong, Chiara Aquilina-Reid, Rachel Bowen-James, Ira W. Deveson |
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(5), pp. 1443-1446, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Daniel Cameron, Ruining Dong, Anthony T. Papenfuss |
StructuralVariantAnnotation: a R/Bioconductor foundation for a caller-agnostic structural variant software ecosystem. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 2046-2048, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Zongren Li, Qin Zhong, Jing Yang, Yongjie Duan, Wenjun Wang, Chengkun Wu, Kunlun He |
DeepKG: an end-to-end deep learning-based workflow for biomedical knowledge graph extraction, optimization and applications. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(5), pp. 1477-1479, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Elijah A. MacCarthy, Chengxin Zhang, Yang Zhang 0040, Dukka B. KC |
GPU-I-TASSER: a GPU accelerated I-TASSER protein structure prediction tool. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(6), pp. 1754-1755, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Benedek Dankó, Péter Szikora, Tamás Pór, Alexa Szeifert, Endre Sebestyén |
SplicingFactory - splicing diversity analysis for transcriptome data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(2), pp. 384-390, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Kirill E. Medvedev, Jimin Pei, Nick V. Grishin |
DisEnrich: database of enriched regions in human dark proteome. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 1870-1876, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Baoshan Ma, Ge Yan 0008, Bingjie Chai, Xiaoyu Hou |
XGBLC: an improved survival prediction model based on XGBoost. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(2), pp. 410-418, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Bailey S. Rose, Jody C. May, Jaqueline A. Picache, Simona G. Codreanu, Stacy D. Sherrod, John A. McLean |
Improving confidence in lipidomic annotations by incorporating empirical ion mobility regression analysis and chemical class prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2872-2879, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Christoph Müssel, Nensi Ikonomi, Silke D. Werle, Felix M. Weidner, Markus Maucher, Julian D. Schwab, Hans A. Kestler |
CANTATA - prediction of missing links in Boolean networks using genetic programming. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(21), pp. 4893-4900, October 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Di Xiao, Hani Jieun Kim, Ignatius Pang, Pengyi Yang |
Functional analysis of the stable phosphoproteome reveals cancer vulnerabilities. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 1956-1963, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Haakon E. Nustad, Ingelin Steinsland, Miina Ollikainen, Emma Cazaly, Jaakko Kaprio, Yuval Benjamini, Kristina Gervin, Robert Lyle |
Modeling dependency structures in 450k DNA methylation data. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 885-891, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Isak Johansson-Åkhe, Björn Wallner |
InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(12), pp. 3209-3215, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Chen Hong, Robin Thiele, Lars Feuerbach |
GenomeTornadoPlot: a novel R package for CNV visualization and focality analysis. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 2036-2038, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | Qi Liu 0024, Chih-Yuan Hsu, Jia Li, Yu Shyr |
Dysregulated ligand-receptor interactions from single-cell transcriptomics. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(12), pp. 3216-3221, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Fei Li, Ziqiao Zhang, Jihong Guan, Shuigeng Zhou |
Effective drug-target interaction prediction with mutual interaction neural network. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(14), pp. 3582-3589, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Musu Yuan, Liang Chen, Minghua Deng |
scMRA: a robust deep learning method to annotate scRNA-seq data with multiple reference datasets. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 738-745, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Virginie Uhlmann, Zsuzsanna Püspöki, Adrien Depeursinge, Michael Unser, Daniel Sage, Julien Fageot |
Steer'n'Detect: fast 2D template detection with accurate orientation estimation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(11), pp. 3146-3148, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Xi Wang, Xiang Zhou, Qinglin Yan, Shaofeng Liao, Wenqin Tang, Peiyu Xu, Yangzhenyu Gao, Qian Li, Zhihui Dou, Weishan Yang, Beifang Huang, Jinhong Li, Zhuqing Zhang |
LLPSDB v2.0: an updated database of proteins undergoing liquid-liquid phase separation in vitro. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 2010-2014, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Pierre-Alain Chaumeil, Aaron J. Mussig, Philip Hugenholtz, Donovan H. Parks |
GTDB-Tk v2: memory friendly classification with the genome taxonomy database. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(23), pp. 5315-5316, November 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Ying Xin, Pin Lyu, Junyao Jiang, Fengquan Zhou, Jie Wang 0066, Seth Blackshaw, Jiang Qian |
LRLoop: a method to predict feedback loops in cell-cell communication. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(17), pp. 4117-4126, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Chiann-Ling C. Yeh, Clara J. Amorosi, Soyeon Showman, Maitreya J. Dunham |
PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2927-2929, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Michal Zurkowski, Tomasz Zok, Marta Szachniuk |
DrawTetrado to create layer diagrams of G4 structures. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(15), pp. 3835-3836, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Benjamin M. David, Ryan M. Wyllie, Ramdane Harouaka, Paul A. Jensen |
A reinforcement learning framework for pooled oligonucleotide design. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2219-2225, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Xinmeng Li, Li-Ping Liu 0001, Soha Hassoun |
Boost-RS: boosted embeddings for recommender systems and its application to enzyme-substrate interaction prediction. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2832-2838, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Longjie Li 0004, Arun Mouli Kolinjivadi, Kok Haur Ong, David M. Young, Gabriel Pik Liang Marini, Sock Hoai Chan, Siao Ting Chong, Ee Ling Chew, Haoda Lu, Laurent Gole, Weimiao Yu, Joanne Ngeow |
Automatic DNA replication tract measurement to assess replication and repair dynamics at the single-molecule level. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(18), pp. 4395-4402, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Thimothée Virgoulay, François Rousset, Raphaël Leblois |
Correction to: GSpace: an exact coalescence simulator of recombining genomes under isolation by distance. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(9), pp. 2674, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Mohammad Taher Pilehvar, Adam Bernard, Damian Smedley, Nigel Collier |
PheneBank: a literature-based database of phenotypes. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 1179-1180, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Aaron Chuah, Sean Li, Andrea Do, Matthew A. Field, Dan Andrews |
StabilitySort: assessment of protein stability changes on a genome-wide scale to prioritize potentially pathogenic genetic variation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(17), pp. 4220-4222, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Elham Jafari, Travis S. Johnson, Yue Wang, Yunlong Liu, Kun Huang, Yijie Wang |
AIscEA: unsupervised integration of single-cell gene expression and chromatin accessibility via their biological consistency. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(23), pp. 5236-5244, November 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Pietro Hiram Guzzi, Luisa Di Paola, Alessandro Giuliani, Pierangelo Veltri |
PCN-Miner: an open-source extensible tool for the analysis of Protein Contact Networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(17), pp. 4235-4237, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | James K. Bonfield |
CRAM 3.1: advances in the CRAM file format. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(6), pp. 1497-1503, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Gregory J. Hunt, Mark A. Dane, James E. Korkola, Laura M. Heiser, Johann Gagnon-Bartsch |
Systematic replication enables normalization of high-throughput imaging assays. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(21), pp. 4934-4940, October 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Liangpeng Nie, Lijun Quan, Tingfang Wu, Ruji He, Qiang Lyu |
TransPPMP: predicting pathogenicity of frameshift and non-sense mutations by a Transformer based on protein features. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2705-2711, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Simon Ott, Adriano Barbosa-Silva, Matthias Samwald |
LinkExplorer: predicting, explaining and exploring links in large biomedical knowledge graphs. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2371-2373, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Zachary Stephens, Alejandro Ferrer, Lisa Boardman, Ravishankar K. Iyer, Jean-Pierre A. Kocher |
Telogator: a method for reporting chromosome-specific telomere lengths from long reads. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(7), pp. 1788-1793, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Maneesha Aluru, Harsh Shrivastava 0001, Sriram P. Chockalingam, Shruti Shivakumar, Srinivas Aluru |
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(5), pp. 1312-1319, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Min-Qi Xue, Xi-Liang Zhu, Ge Wang, Ying-Ying Xu |
DULoc: quantitatively unmixing protein subcellular location patterns in immunofluorescence images based on deep learning features. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(3), pp. 827-833, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Jean Charle Yaacoub, James Gleave, Francesco Gentile, Abraham C. Stern, Artem Cherkasov |
DD-GUI: a graphical user interface for deep learning-accelerated virtual screening of large chemical libraries (Deep Docking). ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(4), pp. 1146-1148, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Kohei Hagiwara, Michael N. Edmonson, David A. Wheeler, Jinghui Zhang |
indelPost: harmonizing ambiguities in simple and complex indel alignments. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(2), pp. 549-551, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Qibing Jiang, Praneeth Sudalagunta, Maria C. Silva, Rafael R. Canevarolo, Xiaohong Zhao, Khandakar Tanvir Ahmed, Raghunandan Reddy Alugubelli, Gabriel Deavila, Alexandre Tungesvik, Lia Perez, Robert A. Gatenby, Robert J. Gillies, Rachid Baz, Mark B. Meads, Kenneth H. Shain, Ariosto Siqueira Silva, Wei Zhang 0076 |
CancerCellTracker: a brightfield time-lapse microscopy framework for cancer drug sensitivity estimation. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(16), pp. 4002-4010, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
DBLP DOI BibTeX RDF |
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1 | John L. Spouge |
A closed formula relevant to 'Theory of local k-mer selection with applications to long-read alignment' by Jim Shaw and Yun William Yu. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(20), pp. 4848-4849, October 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Jun Zhang, Ke Yan 0003, Qingcai Chen, Bin Liu 0014 |
PreRBP-TL: prediction of species-specific RNA-binding proteins based on transfer learning. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(8), pp. 2135-2143, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Emily Hashimoto-Roth, Anuradha Surendra, Mathieu Lavallée-Adam, Steffany A. L. Bennett, Miroslava Cuperlovic-Culf |
METAbolomics data Balancing with Over-sampling Algorithms (META-BOA): an online resource for addressing class imbalance. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(23), pp. 5326-5327, November 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Courtney Schiebout, H. Robert Frost |
CAMML with the Integration of Marker Proteins (ChIMP). ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(23), pp. 5206-5213, November 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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1 | Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu 0003 |
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing. ![Search on Bibsonomy](Pics/bibsonomy.png) |
Bioinform. ![In: Bioinform. 38(10), pp. 2692-2699, 2022. The full citation details ...](Pics/full.jpeg) |
2022 |
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