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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Rebecca Irlmeier, Jacob J. Hughey, Lisa Bastarache, Joshua C. Denny, Qingxia Chen |
Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWAS.  |
Bioinform.  |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Maria Osmala, Gökcen Eraslan, Harri Lähdesmäki |
ChromDMM: a Dirichlet-multinomial mixture model for clustering heterogeneous epigenetic data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hehuan Ma, Yatao Bian, Yu Rong, Wenbing Huang 0001, Tingyang Xu, Weiyang Xie, Geyan Ye, Junzhou Huang |
Cross-dependent graph neural networks for molecular property prediction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Wenxiu Wang, Hamidreza Heydarian, Teun A. P. M. Huijben, Sjoerd Stallinga, Bernd Rieger |
Joint registration of multiple point clouds for fast particle fusion in localization microscopy. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Gökhan Özsari, Ahmet Süreyya Rifaioglu, Ahmet Atakan, Tunca Dogan, Maria Jesus Martin, Rengül Çetin-Atalay, Volkan Atalay |
SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Thomas Hillerton, Deniz Seçilmis, Sven Nelander, Erik L. L. Sonnhammer |
Fast and accurate gene regulatory network inference by normalized least squares regression. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jian Song, Changbin Yu |
Alpha-Tri: a deep neural network for scoring the similarity between predicted and measured spectra improves peptide identification of DIA data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Sehwan Moon, Hyunju Lee |
MOMA: a multi-task attention learning algorithm for multi-omics data interpretation and classification. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicolò Rossi, Andrea Colautti, L. Iacumin, Carla Piazza |
WGA-LP: a pipeline for whole genome assembly of contaminated reads. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Belinda Phipson, Choon Boon Sim, Enzo R. Porrello, Alex W. Hewitt, Joseph E. Powell, Alicia Oshlack |
propeller: testing for differences in cell type proportions in single cell data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Joseph Szymborski, Amin Emad |
RAPPPID: towards generalizable protein interaction prediction with AWD-LSTM twin networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Stephen Price, Stéphane Tombeur, Alexander Hudson, Nanda Kumar Sathiyamoorthy, Paul Smyth, Anjana Singh, Mara Peccianti, Elisa Baroncelli, Ahmed Essaghir, Ilaria Ferlenghi, Sanjay Kumar Phogat, Gurpreet Singh |
TMQuery: a database of precomputed template modeling scores for assessment of protein structural similarity. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Huaxu Yu, Tao Huan |
MAFFIN: metabolomics sample normalization using maximal density fold change with high-quality metabolic features and corrected signal intensities. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Michele Gentili, Leonardo Martini, Marialuisa Sponziello, Luca Becchetti |
Biological Random Walks: multi-omics integration for disease gene prioritization. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaoxi Dong, Kovidh Vegesna, Cory Brouwer, Weijun Luo |
SBGNview: towards data analysis, integration and visualization on all pathways. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jacob M. Schreiber, Surag Nair, Akshay Balsubramani, Anshul Kundaje |
Accelerating in silico saturation mutagenesis using compressed sensing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Carlos G. Oliver, Vincent Mallet, Pericles Philippopoulos, William L. Hamilton, Jérôme Waldispühl |
Vernal: a tool for mining fuzzy network motifs in RNA. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Quan Shi, Shiping Liu, Karsten Kristiansen, Longqi Liu |
The FASTQ+ format and PISA. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Christopher Bennett, Micah Thornton, Chanhee Park, Gervaise Henry, Yun Zhang, Venkat S. Malladi, Daehwan Kim |
SeqWho: reliable, rapid determination of sequence file identity using k-mer frequencies in Random Forest classifiers. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Dietmar Rieder, Georgios Fotakis, Markus Ausserhofer, Rene Geyeregger, Wolfgang Paster, Zlatko Trajanoski, Francesca Finotello |
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Aleksandra E. Badaczewska-Dawid, Javier Garcia-Pardo, Aleksander Kuriata, Jordi Pujols, Salvador Ventura, Sebastian Kmiecik |
A3D database: structure-based predictions of protein aggregation for the human proteome. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Wancen Mu, Hirak Sarkar, Avi Srivastava, Kwangbom Choi, Rob Patro, Michael I. Love |
Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Vivek Ramanan, Shanti Mechery, Indra Neil Sarkar |
GenBank as a source to monitor and analyze Host-Microbiome data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy |
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil |
Integrative data semantics through a model-enabled data stewardship. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Agustin Gonzalez-Reymundez, Alexander Grueneberg, Guanqi Lu, Filipe Couto Alves, Gonzalo Rincon, Ana I Vazquez |
MOSS: multi-omic integration with sparse value decomposition. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Wesley S. van de Geer, Job van Riet, Harmen J. G. van de Werken |
ProteoDisco: a flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso |
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiacheng Xiong, Zhaojun Li, Guangchao Wang, Zunyun Fu, Feisheng Zhong, Tingyang Xu, Xiaomeng Liu, Ziming Huang, Xiaohong Liu 0002, Kaixian Chen, Hualiang Jiang, Mingyue Zheng |
Multi-instance learning of graph neural networks for aqueous pKa prediction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Rosa D. Hernansaiz-Ballesteros, Christian H. Holland, Aurélien Dugourd, Julio Saez-Rodriguez |
FUNKI: interactive functional footprint-based analysis of omics data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Renan Valieris, Rodrigo D. Drummond, Alexandre Defelicibus, Emmanuel Dias-Neto, Rafael Rosales, Israel T. da Silva |
A mixture model for determining SARS-Cov-2 variant composition in pooled samples. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | José Bonet 0001, Mandi Chen, Marc Dabad, Simon Heath, Abel Gonzalez-Perez, Núria López-Bigas, Jens Lagergren |
DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shawn Gu, Meng Jiang 0001, Pietro Hiram Guzzi, Tijana Milenkovic |
Modeling multi-scale data via a network of networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Suhyun Hwangbo, Sungyoung Lee, Seungyeoun Lee, Heungsun Hwang, Inyoung Kim, Taesung Park |
Kernel-based hierarchical structural component models for pathway analysis. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Sven Thiele, Axel von Kamp, Pavlos Stephanos Bekiaris, Philipp Schneider, Steffen Klamt |
CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jia-Cai Yi, Chengkun Wu, Xiao-Chen Zhang, Xinyi Xiao, Yanlong Qiu, Wentao Zhao, Tingjun Hou, Dong-Sheng Cao 0001 |
MICER: a pre-trained encoder-decoder architecture for molecular image captioning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatemeh Almodaresi, Jamshed Khan, Sergey Madaminov, Michael Ferdman, Rob Johnson, Prashant Pandey 0001, Rob Patro |
An incrementally updatable and scalable system for large-scale sequence search using the Bentley-Saxe transformation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jyun-Hong Lin, Liang-Chi Chen, Shu-Chi Yu, Yao-Ting Huang |
LongPhase: an ultra-fast chromosome-scale phasing algorithm for small and large variants. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Pablo Mier, Carlos A. Elena-Real, Juan Cortés, Pau Bernadó, Miguel A. Andrade-Navarro |
The sequence context in poly-alanine regions: structure, function and conservation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Mengyuan Kan, Avantika R. Diwadkar, Supriya Saxena, Haoyue Shuai, Jaehyun Joo, Blanca E. Himes |
REALGAR: a web app of integrated respiratory omics data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Gregory D. Peterson |
BioADAPT-MRC: adversarial learning-based domain adaptation improves biomedical machine reading comprehension task. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Qin Wang, Jun Wei, Yuzhe Zhou, Mingzhi Lin, Ruobing Ren, Sheng Wang, Shuguang Cui, Zhen Li 0026 |
Prior knowledge facilitates low homologous protein secondary structure prediction with DSM distillation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Mujeen Sung, Minbyul Jeong, Yonghwa Choi, Donghyeon Kim, Jinhyuk Lee, Jaewoo Kang |
BERN2: an advanced neural biomedical named entity recognition and normalization tool. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yusuke Matsui, Yuichi Abe, Kohei Uno, Satoru Miyano |
RoDiCE: robust differential protein co-expression analysis for cancer complexome. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Doruk Cakmakci, Gun Kaynar, Caroline Bund, Martial Piotto, Francois Proust, Izzie-Jacques Namer, A. Ercüment Çiçek |
Targeted metabolomics analyses for brain tumor margin assessment during surgery. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jin Jin, Yue Wang |
T2-DAG: a powerful test for differentially expressed gene pathways via graph-informed structural equation modeling. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Naama Wagner, Oren Avram, Dafna Gold-Binshtok, Ben Zerah, Doron Teper, Tal Pupko |
Effectidor: an automated machine-learning-based web server for the prediction of type-III secretion system effectors. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Szabolcs Cselgo Kovács, Balázs Szappanos, Roland Tengölics, Richard A. Notebaart, Balázs Papp |
Underground metabolism as a rich reservoir for pathway engineering. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Marzieh Ayati, Serhan Yilmaz, Mark R. Chance, Mehmet Koyutürk |
Functional characterization of co-phosphorylation networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier |
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Emil K. Gustavsson, David Zhang, Regina H. Reynolds, Sonia García-Ruíz, Mina Ryten |
ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Gleb Zhelezov, James H. Degnan |
Trying out a million genes to find the perfect pair with RTIST. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Matthew Carlucci, Algimantas Krisciunas, Haohan Li, Povilas Gibas, Karolis Koncevicius, Art Petronis, Gabriel Oh |
DiscoRhythm: an easy-to-use web application and R package for discovering rhythmicity. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Vigneshwaran Namasivayam, Katja Stefan, Katja Silbermann, Jens Pahnke, Michael Wiese, Sven Marcel Stefan |
Structural feature-driven pattern analysis for multitarget modulator landscapes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jing Peng, David L. Swofford, Laura Salter Kubatko |
Estimation of speciation times under the multispecies coalescent. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yanming Wei, Quan Zou 0001, Furong Tang, Liang Yu |
WMSA: a novel method for multiple sequence alignment of DNA sequences. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Almut Heinken, Ines Thiele |
Microbiome Modelling Toolbox 2.0: efficient, tractable modelling of microbiome communities. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Rebecca L. Rubinstein, Mikayla A. Borton, Haiyan Zhou, Michael Shaffer, David W. Hoyt, James Stegen, Christopher S. Henry, Kelly C. Wrighton, Roelof Versteeg |
ORT: a workflow linking genome-scale metabolic models with reactive transport codes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin M. Femenias, Juan C. Santos, Jack W. Sites, Luciano J. Avila, Mariana Morando |
ExplorATE: a new pipeline to explore active transposable elements from RNA-seq data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Milena A. Cardoso, Luis E. A. Rizzardi, Leonardo W. Kume, Clarice S. Groeneveld, Sheyla Trefflich, Diego A. A. Morais, Rodrigo J. S. Dalmolin, Bruce A. J. Ponder, Kerstin B. Meyer, Mauro A. A. Castro |
TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Chrispin Chaguza, Gerry Tonkin-Hill, Stephanie W. Lo, James Hadfield, Nicholas J. Croucher, Simon R. Harris, Stephen D. Bentley |
RCandy: an R package for visualizing homologous recombinations in bacterial genomes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Gaetan De Waele, Jim Clauwaert, Gerben Menschaert, Willem Waegeman |
CpG Transformer for imputation of single-cell methylomes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Platero-Rochart, Roy González-Alemán, Erix Wiliam Hernández-Rodríguez, Fabrice Leclerc, Julio Caballero, Luis Alberto Montero-Cabrera |
RCDPeaks: memory-efficient density peaks clustering of long molecular dynamics. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shanzhuo Zhang, Zhiyuan Yan 0002, Yueyang Huang, Lihang Liu, Donglong He, Wei Wang, Xiaomin Fang, Xiaonan Zhang, Fan Wang, Hua Wu 0003, Haifeng Wang 0001 |
HelixADMET: a robust and endpoint extensible ADMET system incorporating self-supervised knowledge transfer. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniele Bizzarri, Marcel J. T. Reinders, Marian Beekman, P. Eline Slagboom, Erik van den Akker 0001 |
MiMIR: R-shiny application to infer risk factors and endpoints from Nightingale Health's 1H-NMR metabolomics data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Marina Ainciburu, Duncan M. Morgan, Erica A. K. Depasquale, J. Christopher Love, Felipe Prósper, Peter van Galen |
WAT3R: recovery of T-cell receptor variable regions from 3′ single-cell RNA-sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Lukas Breitwieser, Ahmad Hesam, Jean de Montigny, Vasileios Vavourakis, Alexandros Iosif, Jack Jennings, Marcus Kaiser, Marco Manca 0002, Alberto Di Meglio, Zaid Al-Ars, Fons Rademakers, Onur Mutlu, Roman Bauer 0001 |
BioDynaMo: a modular platform for high-performance agent-based simulation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Geir Kjetil Sandve, Victor Greiff |
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaoqiong Bao, Kaiyu Zhu, Xuefei Liu, Zhihang Chen, Ziwei Luo, Qi Zhao, Jian Ren 0002, Zhixiang Zuo |
MeRIPseqPipe: an integrated analysis pipeline for MeRIP-seq data based on Nextflow. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio |
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zaiqiao Meng, Anya Okhmatovskaia, Maxime Polleri, Yannan Shen, Guido Powell, Zihao Fu, Iris Ganser, Meiru Zhang, Nicholas B. King, David L. Buckeridge, Nigel Collier |
BioCaster in 2021: automatic disease outbreaks detection from global news media. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael Komodromos, Eric O. Aboagye, Marina Evangelou, Sarah Filippi, Kolyan Ray |
Variational Bayes for high-dimensional proportional hazards models with applications within gene expression. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin Gonzalez Buitron, Ronaldo Romario Tunque Cahui, Emilio Garcia-Rios, Layla Hirsh, Gustavo D. Parisi, María Silvina Fornasari, Nicolas Palopoli |
CoDNaS-RNA: a database of conformational diversity in the native state of RNA. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Lesong Wei, Xiucai Ye, Tetsuya Sakurai, Zengchao Mu, Leyi Wei |
ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yang Cao, Qingyang Dong, Dan Wang, Pengcheng Zhang, Ying Liu, Chao Niu |
microbiomeMarker: an R/Bioconductor package for microbiome marker identification and visualization. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Habib Daneshpajouh, Bowen Chen, Neda Shokraneh, Shohre Masoumi, Kay C. Wiese, Maxwell W. Libbrecht |
Continuous chromatin state feature annotation of the human epigenome. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Roy González-Alemán, Daniel Platero-Rochart, Alejandro Rodríguez-Serradet, Erix Wiliam Hernández-Rodríguez, Julio Caballero, Fabrice Leclerc, Luis Alberto Montero-Cabrera |
MDSCAN: RMSD-based HDBSCAN clustering of long molecular dynamics. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Robert Warmerdam, Pauline Lanting, Patrick Deelen, Lude Franke |
Idéfix: identifying accidental sample mix-ups in biobanks using polygenic scores. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruiyi Zhang, Yunan Luo, Jianzhu Ma, Ming Zhang 0004, Sheng Wang 0012 |
scPretrain: multi-task self-supervised learning for cell-type classification. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jaspreet Singh, Thomas Litfin, Jaswinder Singh, Kuldip K. Paliwal, Yaoqi Zhou |
SPOT-Contact-LM: improving single-sequence-based prediction of protein contact map using a transformer language model. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Haoyang Li, Hanmin Li, Juexiao Zhou, Xin Gao 0001 |
SD2: spatially resolved transcriptomics deconvolution through integration of dropout and spatial information. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Dimitri Höhler, Wayne Pfeiffer, Vassilios Ioannidis, Heinz Stockinger, Alexandros Stamatakis |
RAxML Grove: an empirical phylogenetic tree database. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexey Zabelkin, Yulia Yakovleva, Olga Bochkareva, Nikita Alexeev |
PaReBrick: PArallel REarrangements and BReaks identification toolkit. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yen-Wen Wang, Cécile Ané |
KIMGENS: a novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hyun Kil Shin, Hang-Suk Chun, Sangwoo Lee, Se-Myo Park, Daeui Park, Myung-Gyun Kang, Sungbo Hwang, Jung-Hwa Oh, Hyoung-Yun Han, Woo-Keun Kim, Seokjoo Yoon |
ToxSTAR: drug-induced liver injury prediction tool for the web environment. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Constantin Schneider, Andrew Buchanan, Bruck Taddese, Charlotte M. Deane |
DLAB: deep learning methods for structure-based virtual screening of antibodies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Maximillian G. Marin, Roger Vargas, Michael Harris, Brendan Jeffrey, L. Elaine Epperson, David Durbin, Michael Strong, Max Salfinger, Zamin Iqbal, Irada Akhundova, Sergo Vashakidze, Valeriu Crudu, Alex Rosenthal, Maha R. Farhat |
Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yawei Wang, Yuning Yang, Zhiqiang Ma 0003, Ka-Chun Wong, Xiangtao Li |
EDCNN: identification of genome-wide RNA-binding proteins using evolutionary deep convolutional neural network. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Sichao Qiu, Guoxian Yu, Xudong Lu, Carlotta Domeniconi, Maozu Guo 0001 |
Isoform function prediction by Gene Ontology embedding. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jialin Qu, Yuehua Cui |
Gene set analysis with graph-embedded kernel association test. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Sumit Tarafder, Mazharul Islam, Swakkhar Shatabda, Atif Rahman 0001 |
Figbird: a probabilistic method for filling gaps in genome assemblies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Martina Bevilacqua, Lisanna Paladin, Silvio C. E. Tosatto, Damiano Piovesan |
ProSeqViewer: an interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Bartlomiej Szawulak, Marcin Radom, Piotr Formanowicz |
Comparing Petri net-based models of biological systems using Holmes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hongyang Yu, Hongjiang C. Yu |
Powerful molecule generation with simple ConvNet. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Brian M. Schilder, Jack Humphrey, Towfique Raj |
echolocatoR: an automated end-to-end statistical and functional genomic fine-mapping pipeline. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Stefan Ebmeyer, Roelof Dirk Coertze, Fanny Berglund, Erik Kristiansson, D. G. Joakim Larsson |
GEnView: a gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and plasmids. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Cheng Yan, Guihua Duan, Na Li, Lishen Zhang, Fang-Xiang Wu, Jianxin Wang 0001 |
PDMDA: predicting deep-level miRNA-disease associations with graph neural networks and sequence features. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Mohammed Eslami, Amin Espah Borujeni, Hamed Eramian, Mark Weston, George Zheng, Joshua Urrutia, Carolyn Corbet, Diveena Becker, Paul Maschhoff, Katie Clowers, Alexander Cristofaro, Hamid Doost Hosseini, D. Benjamin Gordon, Yuval Dorfan, Jedediah Singer, Matthew Vaughn, Niall Gaffney, John Fonner, Joe Stubbs, Christopher A. Voigt, Enoch Yeung |
Prediction of whole-cell transcriptional response with machine learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Bo Wen, Eric J. Jaehnig, Bing Zhang 0003 |
OmicsEV: a tool for comprehensive quality evaluation of omics data tables. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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| 1 | Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Shannon Erhardt, Jun Wang, Xiaoqing Peng, Jianxin Wang 0001 |
AlzCode: a platform for multiview analysis of genes related to Alzheimer's disease. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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