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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Matthew Hayes, Angela Nguyen, Rahib Islam, Caryn Butler, Ethan Tran, Derrick Mullins, Chindo Hicks |
HolistIC: leveraging Hi-C and whole genome shotgun sequencing for double minute chromosome discovery.  |
Bioinform.  |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Parham Kazemi, Johnathan Wong, Vladimir Nikolic, Hamid Mohamadi, René L. Warren, Inanç Birol |
ntHash2: recursive spaced seed hashing for nucleotide sequences. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yue Zhao, Lianbo Yu, Xue Wu, Haoran Li, Kevin R. Coombes, Kin Fai Au, Lijun Cheng, Lang Li 0001 |
CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hayda Almeida, Adrian Tsang, Abdoulaye Baniré Diallo |
Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Melissa Kimble, S. Allers, K. Campbell, Chaofan Chen, Laura M. Jackson, Benjamin L. King, Samantha Silverbrand, G. York, Kate Beard |
medna-metadata: an open-source data management system for tracking environmental DNA samples and metadata. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jouni Sirén, Benedict Paten |
GBZ file format for pangenome graphs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Akio Onogi, Aisaku Arakawa |
An R package VIGoR for joint estimation of multiple linear learners with variational Bayesian inference. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Alejandro Cáceres, Juan R. González |
teff: estimation of Treatment EFFects on transcriptomic data using causal random forest. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Peter Zhang, Alida Palmisano, Ravindra Kumar, Ming-Chung Li, James H. Doroshow, Yingdong Zhao |
TPWshiny: an interactive R/Shiny app to explore cell line transcriptional responses to anti-cancer drugs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Adam Midlik, Ivana Hutarová Vareková, Jan Hutar, Aliaksei Chareshneu, Karel Berka, Radka Svobodová Vareková |
OverProt: secondary structure consensus for protein families. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Ya-Ru Miao, Meng-Xuan Xia, Mei Luo, Tao Luo, Mei Yang, An-Yuan Guo |
ImmuCellAI-mouse: a tool for comprehensive prediction of mouse immune cell abundance and immune microenvironment depiction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jonathan Raad, Leandro A Bugnon, Diego H. Milone, Georgina Stegmayer |
miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Pengyu Zhang, Yingfu Wu, Haoru Zhou, Bing Zhou, Hongming Zhang 0002, Hao Wu 0062 |
CLNN-loop: a deep learning model to predict CTCF-mediated chromatin loops in the different cell lines and CTCF-binding sites (CBS) pair types. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander Lachmann, Zhuorui Xie, Avi Ma'ayan |
blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Ines Thiele, German A. Preciat Gonzalez, Ronan M. T. Fleming |
MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Paola Paci, Giulia Fiscon |
SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Joshua Fry, Yangyang Li, Rendong Yang |
ScanExitronLR: characterization and quantification of exitron splicing events in long-read RNA-seq data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Xuexue Liu, Ludovic Orlando |
mapDATAge: a ShinyR package to chart ancient DNA data through space and time. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yifan Gui, Shuangshuang Xie, Yanan Wang, Ping Wang, Renzhi Yao, Xukai Gao, Yutian Dong, Gaoang Wang, Kuan Yoow Chan |
pcnaDeep: a fast and robust single-cell tracking method using deep-learning mediated cell cycle profiling. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shi-Hao Feng, Chun-Qiu Xia, Hong-Bin Shen |
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Torbjørn Rognes, Lonneke Scheffer, Victor Greiff, Geir Kjetil Sandve |
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael Nodzenski, Min Shi 0002, Juno M. Krahn, Alison S. Wise, Yuanyuan Li, Leping Li, David M. Umbach, Clarice R. Weinberg |
GADGETS: a genetic algorithm for detecting epistasis using nuclear families. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Chen, Xianyang Zhang |
dICC: distance-based intraclass correlation coefficient for metagenomic reproducibility studies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Giulio Formenti, Linelle Abueg, Angelo Brajuka, Nadolina Brajuka, Cristóbal Gallardo-Alba, Alice Giani, Olivier Fedrigo, Erich D. Jarvis |
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Huiwei Zhou, Haibin Jiang, Weihong Yao, Xun Du |
Learning temporal difference embeddings for biomedical hypothesis generation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Walid M. Abdelmoula, Sylwia Stopka, Elizabeth C. Randall, Michael Regan, Jeffrey N. Agar, Jann N. Sarkaria, William M. Wells III, Tina Kapur, Nathalie Y. R. Agar |
massNet: integrated processing and classification of spatially resolved mass spectrometry data using deep learning for rapid tumor delineation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shaojing Wang, Guoqiang Li, Zitong Liao, Yunke Cao, Yuan Yun, Zhaoying Su, Xuefeng Tian, Ziyu Gui, Ting Ma |
CnnPOGTP: a novel CNN-based predictor for identifying the optimal growth temperatures of prokaryotes using only genomic k-mers distribution. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Wonjin Yoon, Richard Jackson, Aron Lagerberg, Jaewoo Kang |
Sequence tagging for biomedical extractive question answering. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Topological analysis as a tool for detection of abnormalities in protein-protein interaction data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Haotian Zhuang, Huimin Wang, Zhicheng Ji |
findPC: An R package to automatically select the number of principal components in single-cell analysis. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zeheng Bai, Yao-zhong Zhang, Satoru Miyano, Rui Yamaguchi, Kosuke Fujimoto, Satoshi Uematsu, Seiya Imoto |
Identification of bacteriophage genome sequences with representation learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Colm Seale, Yasin Tepeli, Joana P. Gonçalves |
Overcoming selection bias in synthetic lethality prediction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zuguang Gu, Daniel Hübschmann |
Pkgndep: a tool for analyzing dependency heaviness of R packages. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael Uhl, Dominik Rabsch, Florian Eggenhofer, Rolf Backofen |
Peakhood: individual site context extraction for CLIP-seq peak regions. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Gordon T. Luu, Michael A. Freitas, Itzel Lizama-Chamu, Catherine S. McCaughey, Laura M. Sanchez, Mingxun Wang 0001 |
TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Philippe Weitz, Yinxi Wang, Kimmo Kartasalo, Lars Egevad, Johan Lindberg, Henrik Grönberg, Martin Eklund, Mattias Rantalainen |
Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yushuang Liu, Shuping Jin, Hongli Gao, Xue Wang, Congjing Wang, Weifeng Zhou, Bin Yu 0007 |
Predicting the multi-label protein subcellular localization through multi-information fusion and MLSI dimensionality reduction based on MLFE classifier. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shuyi Zhang, Jacob R. Leistico, Raymond J. Cho, Jeffrey B. Cheng, Jun S. Song |
Spectral clustering of single-cell multi-omics data on multilayer graphs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Pu Huang, Erin Davis, Xia Cao, Hunter J. Cameron |
riboCleaner: a pipeline to identify and quantify rRNA read contamination from RNA-seq data in plants. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Fei-Liao Lai, Feng Gao 0001 |
GC-Profile 2.0: an extended web server for the prediction and visualization of CpG islands. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jinyu Sun, Ming Wen 0003, Huabei Wang, Yuezhe Ruan, Qiong Yang, Xiao Kang, Hailiang Zhang, Zhimin Zhang, Hongmei Lu |
Prediction of drug-likeness using graph convolutional attention network. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Vincent Mallet, Luis Checa Ruano, Alexandra Moine-Franel, Michael Nilges, Karen Druart, Guillaume Bouvier, Olivier Sperandio |
InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Turkan Haliloglu, Aysima Hacisuleyman, Burak Erman |
Prediction of allosteric communication pathways in proteins. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Andre Lamurias, Mantas Sereika, Mads Albertsen, Katja Hose, Thomas Dyhre Nielsen |
Metagenomic binning with assembly graph embeddings. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Mitchell R. Vollger, Peter Kerpedjiev, Adam M. Phillippy, Evan E. Eichler |
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Antoine Passemiers, Yves Moreau, Daniele Raimondi |
Fast and accurate inference of gene regulatory networks through robust precision matrix estimation. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yi-Jun Tang, Yihe Pang, Bin Liu 0014 |
DeepIDP-2L: protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Joan Segura, Yana Rose, Sebastian Bittrich, Stephen K. Burley, Jose M. Duarte |
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Giacomo Baruzzo, Giulia Cesaro, Barbara Di Camillo |
Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Luis García-Jimeno, Coral Fustero Torre, María José Jiménez-Santos, Gonzalo Gómez-López, Tomás Di Domenico, Fátima Al-Shahrour |
bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Tong Zhou, Jie Rong, Yang Liu, Weikang Gong, Chunhua Li |
An ensemble approach to predict binding hotspots in protein-RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Eduardo Vieira de Souza, Pedro Ferrari Dalberto, Vinicius Pellisoli Machado, Adriana Canedo, Alan Saghatelian, Pablo Machado, Luiz Augusto Basso, Cristiano Valim Bizarro |
µProteInS - a proteogenomics pipeline for finding novel bacterial microproteins encoded by small ORFs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Liesa Salzer, Michael Witting, Philippe Schmitt-Kopplin |
MobilityTransformR: an R package for effective mobility transformation of CE-MS data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Athena Chen, Kai Kammers, H. Benjamin Larman, Robert B. Scharpf, Ingo Ruczinski |
Detecting and quantifying antibody reactivity in PhIP-Seq data with BEER. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Herbert Teun Kruitbosch, Yasmin Mzayek, Sara Omlor, Paolo Guerra, Andreas Milias-Argeitis |
A convolutional neural network for segmentation of yeast cells without manual training annotations. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhuoqing Fang, Gary Peltz |
An automated multi-modal graph-based pipeline for mouse genetic discovery. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jie Tan, Zhencheng Fang, Shufang Wu, Qian Guo, Xiaoqing Jiang, Huaiqiu Zhu |
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Darvin Mertsch, Mario Stanke |
End-to-end learning of evolutionary models to find coding regions in genome alignments. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shohre Masoumi, Maxwell W. Libbrecht, Kay C. Wiese |
SigTools: exploratory visualization for genomic signals. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Lance D. Hentges, Martin J. Sergeant, Christopher B. Cole, Damien J. Downes, Jim R. Hughes, Stephen Taylor |
LanceOtron: a deep learning peak caller for genome sequencing experiments. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Kaimei Huang, Binghu Lin, Jinyang Liu, Yankun Liu, Jingwu Li, Geng Tian, Jialiang Yang |
Predicting colorectal cancer tumor mutational burden from histopathological images and clinical information using multi-modal deep learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Azza Althagafi, Lamia Alsubaie, Nagarajan Kathiresan, Katsuhiko Mineta, Taghrid Aloraini, Fuad Al Mutairi, Majid Alfadhel, Takashi Gojobori, Ahmad Alfares, Robert Hoehndorf |
DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Han Cao 0001, Youcheng Zhang, Jan Baumbach, Paul R. Burton, Dominic B. Dwyer, Nikolaos Koutsouleris, Julian O. Matschinske, Yannick Marcon, Sivanesan Rajan, Thilo Rieg, Patricia Ryser-Welch, Julian Späth, Carl Herrmann, Emanuel Schwarz |
dsMTL: a computational framework for privacy-preserving, distributed multi-task machine learning. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Min Li 0007, Zhangli Lu, Yifan Wu, Yaohang Li |
BACPI: a bi-directional attention neural network for compound-protein interaction and binding affinity prediction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Michal Ziemski, Anja Adamov, Lina Kim, Lena Flörl, Nicholas A. Bokulich |
Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta)data using q2-fondue. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yilei Huang, Harald Ringbauer |
hapCon: estimating contamination of ancient genomes by copying from reference haplotypes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Bintao He, Yan Zhang, Fa Zhang 0001, Renmin Han |
Correction of image distortion in large-field ssEM stitching by an unsupervised intermediate-space solving network. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shuang Song 0006, Lin Hou, Jun S. Liu |
Erratum to: A data-adaptive Bayesian regression approach for polygenic risk prediction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Federico Ansaloni, Nicolò Gualandi, Mauro Esposito, Stefano Gustincich, Remo Sanges |
TEspeX: consensus-specific quantification of transposable element expression preventing biases from exonized fragments. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hemil Panchiwala, Shalin Shah, Hannes Planatscher, Mykola Zakharchuk, Matthias König 0003, Andreas Dräger |
The systems biology simulation core library. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaotian Hu, Cong Feng, Yincong Zhou, Andrew P. Harrison, Ming Chen 0005 |
DeepTrio: a ternary prediction system for protein-protein interaction using mask multiple parallel convolutional neural networks. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Morgan Shine, Chengxin Zhang, Anna Marie Pyle |
AMIGOS III: pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hongqiang Lyu, Erhu Liu, Zhifang Wu, Yao Li, Yuan Liu, Xiaoran Yin |
scHiCPTR: unsupervised pseudotime inference through dual graph refinement for single-cell Hi-C data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Hui Wan, Liang Chen, Minghua Deng |
scNAME: neighborhood contrastive clustering with ancillary mask estimation for scRNA-seq data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Isuru Udara Liyanage, Tony Burdett, Bert Droesbeke, Karoly Erdos, Rolando Fernandez, Alasdair J. G. Gray, Muhammad Haseeb, Simon Jupp, Flavia Penim, Cyril Pommier, Philippe Rocca-Serra, Mélanie Courtot, Frederik Coppens |
ELIXIR biovalidator for semantic validation of life science metadata. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhenhua Yu 0002, Fang Du |
AMC: accurate mutation clustering from single-cell DNA sequencing data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Dibyajyoti Maity, Debnath Pal |
MD DaVis: interactive data visualization of protein molecular dynamics. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Ioan Ieremie, Rob M. Ewing, Mahesan Niranjan |
TransformerGO: predicting protein-protein interactions by modelling the attention between sets of gene ontology terms. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Luca Barbon, Victoria Offord, Elizabeth J. Radford, Adam P. Butler, Sebastian S. Gerety, David J. Adams, Hong Kee Tan, Andrew J. Waters |
Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicolas P. Canete, Sourish S. Iyengar, John T. Ormerod, Heeva Baharlou, Andrew N. Harman, Ellis Patrick |
spicyR: spatial analysis of in situ cytometry data in R. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Erik Scott Wright |
FindNonCoding: rapid and simple detection of non-coding RNAs in genomes. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Ramin Shirali Hossein Zade, Aysun Urhan, Alvaro Assis de Souza, Akash Singh, Thomas Abeel |
HAT: haplotype assembly tool using short and error-prone long reads. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Overcoming the inadaptability of sparse group lasso for data with various group structures by stacking. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Dominik Buchner, Till-Hendrik Macher, Florian Leese |
APSCALE: advanced pipeline for simple yet comprehensive analyses of DNA metabarcoding data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Qian Feng, Kathryn E. Tiedje, Shazia Ruybal-Pesántez, Gerry Tonkin-Hill, Michael F. Duffy, Karen P. Day, Heejung Shim, Yao-Ban Chan |
An accurate method for identifying recent recombinants from unaligned sequences. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Yang-Ming Yeh, Yi-Chang Lu |
MSRCall: a multi-scale deep neural network to basecall Oxford Nanopore sequences. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Peixin Tian, Minhao Yao, Tao Huang, Zhonghua Liu |
CoxMKF: a knockoff filter for high-dimensional mediation analysis with a survival outcome in epigenetic studies. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shuangquan Zhang, Lili Yang 0004, Xiaotian Wu, Nan Sheng, Yuan Fu, Anjun Ma, Yan Wang 0028 |
MMGraph: a multiple motif predictor based on graph neural network and coexisting probability for ATAC-seq data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiacheng Leng, Ling-Yun Wu |
Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Sandra Hui, Rasmus Nielsen |
SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander N. Stein, Anoushka Joglekar, Chi-Lam Poon, Hagen U. Tilgner |
ScisorWiz: visualizing differential isoform expression in single-cell long-read data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Tian Bai 0002, Jiayu Xu, Zhenting Zhang, Shuyu Guo, Xiao Luo |
Context-aware learning for cancer cell nucleus recognition in pathology images. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Coleman R. Harris, Eliot T. McKinley, Joseph T. Roland, Qi Liu 0024, Martha J. Shrubsole, Ken S. Lau, Robert J. Coffey, Julia Wrobel, Simon N. Vandekar |
Quantifying and correcting slide-to-slide variation in multiplexed immunofluorescence images. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Wenyi Zhao, Xun Gu, Shuqing Chen, Jian Wu, Zhan Zhou |
MODIG: integrating multi-omics and multi-dimensional gene network for cancer driver gene identification based on graph attention network model. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Maciej Piernik, Dariusz Brzezinski, Pawel Sztromwasser, Klaudia Pacewicz, Weronika Majer-Burman, Michal Gniot, Dawid Sielski, Oleksii Bryzghalov, Alicja Wozna, Pawel Zawadzki |
DBFE: distribution-based feature extraction from structural variants in whole-genome data. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | David Earl Hostallero, Yihui Li, Amin Emad |
Looking at the BiG picture: incorporating bipartite graphs in drug response prediction. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, Toshiaki Katayama |
TogoID: an exploratory ID converter to bridge biological datasets. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Marina A. Pak, Dmitry N. Ivankov |
Best templates outperform homology models in predicting the impact of mutations on protein stability. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Helena Balabin, Charles Tapley Hoyt, Colin Birkenbihl, Benjamin M. Gyori, John A. Bachman, Alpha Tom Kodamullil, Paul G. Plöger, Martin Hofmann-Apitius, Daniel Domingo-Fernández |
STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
|
| 1 | Meiling Wang 0001, Wei Shao 0005, Xiaoke Hao, Shuo Huang, Daoqiang Zhang |
Identify connectome between genotypes and brain network phenotypes via deep self-reconstruction sparse canonical correlation analysis. |
Bioinform. |
2022 |
DBLP DOI BibTeX RDF |
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