Search results for "binding"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
18	M. D. Derk	Towards a simpler method of operational semantics for language definition.	ACM SIGPLAN Notices	2005	DBLP DOI BibTeX RDF	operational semantics, binding, BNF
18	Gaby Hayon, Moshe Abeles, Daniel Lehmann 0001	A Model for Representing the Dynamics of a System of Synfire Chains.	J. Comput. Neurosci.	2005	DBLP DOI BibTeX RDF	binding-mechanism, neural-networks, compositionality, synfire-chains
18	Gerardo Canfora, Piero Corte, Antonio De Nigro, Debora Desideri, Massimiliano Di Penta, Raffaele Esposito, Amedeo Falanga, Gloria Renna, Rita Scognamiglio, Francesco Torelli, Maria Luisa Villani, Paolo Zampognaro	The C-Cube framework: developing autonomic applications through web services.	ACM SIGSOFT Softw. Eng. Notes	2005	DBLP DOI BibTeX RDF	automatic service discovery, automatic service negotiation, run-time binding, service replanning, service-oriented systems
18	Jules White, Boris Kolpackov, Balachandran Natarajan, Douglas C. Schmidt	Reducing application code complexity with vocabulary-specific XML language bindings.	ACM Southeast Regional Conference (2)	2005	DBLP DOI BibTeX RDF	W3C XML schema, vocabulary-specific language binding, XML, C++, DOM, SAX
18	Oliver Bringmann 0001, Wolfgang Rosenstiel, Axel Siebenborn	Conflict analysis in multiprocess synthesis for optimized system integration.	CODES+ISSS	2005	DBLP DOI BibTeX RDF	scheduling, systems-on-chip, system level design, concurrent systems, binding, behavioral synthesis
18	Ralf Lämmel, Erik Meijer 0001	Mappings Make Data Processing Go 'Round.	GTTSE	2005	DBLP DOI BibTeX RDF	XML data binding, Object-XML mapping, Cross-paradigm impedance mismatch, Mapping, Software evolution, Data modeling, Data processing, Data access, Loose coupling, Object-relational mapping
18	Hridesh Rajan, Kevin J. Sullivan	Classpects: unifying aspect- and object-oriented language design.	ICSE	2005	DBLP DOI BibTeX RDF	classpect, join point-method binding, aspect-oriented
18	Niels H. Christensen, Robert Glück	Offline partial evaluation can be as accurate as online partial evaluation.	ACM Trans. Program. Lang. Syst.	2004	DBLP DOI BibTeX RDF	offline partial evaluation, online partial evaluation, generalization, metacomputation, program specialization, constant propagation, Binding-time analysis
18	Kenichi Asai	Offline partial evaluation for shift and reset.	PEPM	2004	DBLP DOI BibTeX RDF	CPS transformation, binding-time analysis (BTA), offline partial evaluation, continuation-passing style (CPS), logical relations, delimited continuations
18	Eleazar Eskin	From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles.	RECOMB	2004	DBLP DOI BibTeX RDF	patterns, profiles, transcription factor binding sites, motif-finding
18	Xiaoyue Zhao, Haiyan Huang, Terence P. Speed	Finding short DNA motifs using permuted markov models.	RECOMB	2004	DBLP DOI BibTeX RDF	Jeffreys mixture, maximal dependence decomposition, permuted variable length Markov models, weight matrix models, model selection, transcription factor binding sites, splice sites
18	Debatosh Debnath, Tsutomu Sasao	Efficient computation of canonical form for Boolean matching in large libraries.	ASP-DAC	2004	DBLP DOI BibTeX RDF	cell-library binding, Logic synthesis, technology mapping, canonical form, Boolean matching
18	Wang Xuan, Zheng Li, Yang Fang	An Implementation of Learning Objects Management System.	ICWL	2004	DBLP DOI BibTeX RDF	XML binding, eLearning standards, XML-native database, metadata, learning object, eLearning, web-based learning, learning technology, Learning Object Metadata, LOM, learning resource
18	Mark R. Shinwell, Andrew M. Pitts, Murdoch Gabbay	FreshML: programming with binders made simple.	ICFP	2003	DBLP DOI BibTeX RDF	alpha-conversion, metaprogramming, variable binding
18	Alexander J. Hartemink, David K. Gifford, Tommi S. Jaakkola, Richard A. Young	Bayesian Methods for Elucidating Genetic Regulatory Networks.	IEEE Intell. Syst.	2002	DBLP DOI BibTeX RDF	Affymetrix GeneChip, annotated Bayesian network, annotated graphical model, computational functional genomics, gene expression array, genomic binding location data, genomic expression data, annotation, model validation, genetic regulatory network
18	Rowan Davies, Frank Pfenning	A modal analysis of staged computation.	J. ACM	2001	DBLP DOI BibTeX RDF	binding times, staged computation, run-time code generation
18	Peter C. R. Lane, James Brinton Henderson	Incremental Syntactic Parsing of Natural Language Corpora with Simple Synchrony Networks.	IEEE Trans. Knowl. Data Eng.	2001	DBLP DOI BibTeX RDF	simple synchrony networks, temporal synchrony variable binding, natural language processing, syntactic parsing, Connectionist networks
18	Matthieu Martel, Marc Gengler	Partial Evaluation of Concurrent Programs.	Euro-Par	2001	DBLP DOI BibTeX RDF	Partial Evaluation, Control Flow Analysis, Concurrent Languages, Binding-time Analysis
18	Steve Lawrence, C. Lee Giles, Sandiway Fong	Natural Language Grammatical Inference with Recurrent Neural Networks.	IEEE Trans. Knowl. Data Eng.	2000	DBLP DOI BibTeX RDF	government-and-binding theory, principles-and-parameters framework, automata extraction, natural language processing, simulated annealing, Recurrent neural networks, grammatical inference, gradient descent
18	Keith H. Bennett, Paul J. Layzell 0001, David Budgen, Pearl Brereton, Linda A. Macaulay, Malcolm Munro	Service-based software: the future for flexible software.	APSEC	2000	DBLP DOI BibTeX RDF	service-based software, flexible software, software functionality, demand-centric view, open marketplace, long-term strategic view, software engineering innovation, demand-side model, component binding, rapidly changing business needs, software engineering, user centred design, future, software industry, time-to-market, DP industry, computer software, technological forecasting, service architecture
18	Michael Ströbel	A Framework for Electronic Negotiations Based on Adjusted-Winner Mediation.	DEXA Workshops	2000	DBLP DOI BibTeX RDF	adjusted-winner mediation, procedural framework, electronic market mediation service, adjusted-winner procedure, fair division, mutually beneficial agreements, negotiating agents, electronic market setting, binding offers, mirroring utility functions, mediation service, matchmaking facility, negotiation processes, market agents, negotiation support systems, electronic negotiations
18	Yoshihiko Ebihara, H. Ushine, Hongbing Chen, Shigetomo Kimura	Analysis on Responsiveness and Input Traffic Regulation in Heterogeneous Information Systems.	DEXA Workshops	2000	DBLP DOI BibTeX RDF	input traffic regulation, heterogeneous information systems, hierarchical protocol structures, multi-layered protocol, maximum input traffic, end-to-end responsiveness, binding method, distributed databases, mean response time
18	Joachim Biskup, Ulrich Flegel	Transaction-Based Pseudonyms in Audit Data for Privacy Respecting Intrusion Detection.	Recent Advances in Intrusion Detection	2000	DBLP DOI BibTeX RDF	audit analysis, purpose binding, privacy, intrusion detection, anonymity, secret sharing, pseudonymity
18	Luong T. Nguyen, Liping Zhao 0001, Bill Appelbe	A Set Approach to Role Modeling.	TOOLS (37)	2000	DBLP DOI BibTeX RDF	set approach, role modeling techniques, role description, role binding, role constraints, set inclusion, role specialisation, role compositions, part role, set notation, dynamic description, class/role relationships, class/role structures, Object-Z-like notation, system obligations, Petri net transitions, objects/role instances, system operations, formal specification, formal method, Petri nets, object-oriented programming, object-oriented methods, set theory, EMS, graphic notations, dynamic aspects, set operations, set intersection, formal notation, set union, set unions, set difference
18	Wei Mingliang, Qian Yu, Mao Bing, Xie Li	Protocol Mapping Model for Distributed Multimedia Systems.	TOOLS (36)	2000	DBLP DOI BibTeX RDF	protocol mapping, protocol binding, active networks, distributed multimedia system
18	Kyumyung Choi, Steven P. Levitan	A flexible datapath allocation method for architectural synthesis.	ACM Trans. Design Autom. Electr. Syst.	1999	DBLP DOI BibTeX RDF	allocation and binding, high-level synthesis
18	Flemming Nielson, Hanne Riis Nielson	Type and Effect Systems.	Correct System Design	1999	DBLP DOI BibTeX RDF	Polymorphic type systems, effect annotations, subeffecting and subtyping, type inference algorithms, syntactic soundness and completeness, Analyses for control flow, binding times, region structure and communication structure, side effects, semantic correctness
18	Gautier Koscielny, Salah Sadou	Dynamic Reuse of Services in Distributed Systems.	TOOLS (29)	1999	DBLP DOI BibTeX RDF	dynamic reuse, type conformance, coordination, open distributed systems, late binding
18	Thomas P. Jensen	Disjunctive Program Analysis for Algebraic Data Types.	ACM Trans. Program. Lang. Syst.	1997	DBLP DOI BibTeX RDF	abstract interpretaton, binding-time and data-flow analysis, nonstandard type systems, lambda calculus, strictness analysis
18	Amir A. Khwaja	Enhancing extensibility of the design rule checker of an EDA tool by object-oriented modeling.	COMPSAC	1997	DBLP DOI BibTeX RDF	design rule checker, design rule checking systems, electronic design automation tools, semiconductor technology, DRC systems, DRC module, IC package design tool, object oriented modeling technique, abstraction, inheritance, extensibility, object oriented modeling, encapsulation, circuit CAD, dynamic binding, EDA tool
18	Jürgen Teich, Tobias Blickle, Lothar Thiele	An evolutionary approach to system-level synthesis.	CODES	1997	DBLP DOI BibTeX RDF	architecture selection, cost constraints, graph-based mapping model, heterogeneous hardware/software architecture, optimal mapping, performance constraints, task-level specification mapping, video-codec implementations, genetic algorithms, scheduling, memories, ASICs, design space exploration, allocation, optimization problem, binding, buses, system-level synthesis, evolutionary approach, algorithm mapping, general-purpose processors, dedicated processors
18	Yuri Pogudin	Simulation Of Fine-Grained Parallel Algorithms With The ALT (Animated Language Tools) System.	DIS-RT	1997	DBLP DOI BibTeX RDF	fine-grained parallel algorithms simulation, ALT system, Animated Language Tools, textual elements, algorithm behaviour visualization, source representation, functional details, binding covers mechanism, parallel substitution algorithm model, interactive graphic forms, data structure display, source-code functional elements, graphical data objects, equivalent transformations optimization, parallel algorithms, C language, language interface
18	James F. Leathrum, K. A. Liburdy	A formal approach to requirements based testing in open systems standards.	ICRE	1996	DBLP DOI BibTeX RDF	requirements based testing, IEEE POSIX arena, open systems standards, full scale conformance test suite development, executable tests, Clemson Automated Testing System, design taxonomy, IEEE Std 10035-The Ada Language Binding to POSIX, formal specification, testing, systems analysis, open systems, conformance testing, IEEE standards, software standards, automatic translation, test requirements, formal approach
18	Günter Graw, Volker Gruhn, Heiko Krumm	Support of cooperating and distributed business processes.	ICPADS	1996	DBLP DOI BibTeX RDF	distributed business processes, cooperating business processes, business process management systems, computer-based information processing, personal activities, business procedures, computer-based business process assistance, dynamic naming, object trading, distributed databases, workflow management systems, binding, management information systems
18	Kanad Ghose, Kiran Raghavendra Desai, Peter M. Kogge	Using Method Lookup Caches and Register Windowing to Speed Up Dynamically-Bound Object-Oriented Applications.	EUROMICRO	1996	DBLP DOI BibTeX RDF	method lookup caches, dynamically-bound object-oriented applications, logical reference, method binding, context allocation, contemporary pipelined datapath, detailed register level simulation, object-oriented programming, object oriented programming languages, register windowing
18	Zoran Milosevic, David Arnold 0002, Luke O'Connor	Inter-enterprise contract architecture for open distributed systems: security requirements.	WETICE	1996	DBLP DOI BibTeX RDF	inter-enterprise contract architecture, electronic inter-enterprise interactions, enforcement capability, business contracts, standard contract sequence reuse, public repository, binding, performance monitoring, security requirements, business communication, open distributed systems, distributed infrastructure
18	Herman Schmit, Donald E. Thomas	Array mapping in behavioral synthesis.	ISSS	1995	DBLP DOI BibTeX RDF	array grouping, array mapping, memory components, memory design space, schedule length, scheduling, data structures, memory architecture, hardware description languages, binding, behavioral synthesis, access times, design representation, hardware synthesis, synthesis tool
18	Aviel D. Rubin	Extending NCP for protocols using public keys.	ICCCN	1995	DBLP DOI BibTeX RDF	nonmonotonic cryptographic protocols, asymmetric keys, update function, principals, binding requirements, public key protocol, protocols, certificates, inference rules
18	Wayne Citrin, Richard Hall, Benjamin G. Zorn	Programming with Visual Expressions.	VL	1995	DBLP DOI BibTeX RDF	visual expressions, formal symbolic term rewriting system, VEX, expression-oriented component, VIPR, computer science education, visual programming, visual languages, teaching, teaching, lambda calculus, lambda calculus, programming theory, binding, rewriting systems, substitution, visual programming language, programming language semantics, functional programming languages, free variables
18	Minoru Asogawa, Yukiko Fujiwara, Akihiko Konagaya	A combination of a functional motif model and a structural motif model for a database validation.	HICSS (5)	1995	DBLP DOI BibTeX RDF	functional motif model, structural motif model, database validation, leucine zipper motif, twisted alpha helix sequences, DNA binding site, alpha helix region, Swiss Protein database, helical structures, PDB database, neural network, hidden Markov models, HMM, hidden Markov model, database management systems, neural nets, DNA, genetics, biology computing, subsequence
18	Rong N. Chang, Chinya V. Ravishankar	A Service Acquisition Mechanism for Server-Based Heterogeneous Distributed Systems.	IEEE Trans. Parallel Distributed Syst.	1994	DBLP DOI BibTeX RDF	serviceacquisition mechanism, server-based heterogeneous distributed systems, remote networkservers, server interface binding protocols, interface operation invocation protocols, Clibrary interface, protocols, distributed processing, abstract data types, abstract data type, network servers
18	Moises Lejter, Scott Meyers, Steven P. Reiss	Support for Maintaining Object-Oriented Programs.	IEEE Trans. Software Eng.	1992	DBLP DOI BibTeX RDF	semantics-based tools, C++ programs, interactive database interface, text editor, object-oriented programs, object-oriented programming, relational databases, software maintenance, inheritance, inheritance, object-oriented languages, object-oriented languages, C language, relational database system, dynamic binding, program maintenance
18	Jesper Jørgensen	Generating a Compiler for a Lazy Language by Partial Evaluation.	POPL	1992	DBLP DOI BibTeX RDF	binding time improvements, lazy functional languages, partial evaluation, compiler generation
18	Yih-Farn Chen, Michael Y. Nishimoto, C. V. Ramamoorthy	The C Information Abstraction System.	IEEE Trans. Software Eng.	1990	DBLP DOI BibTeX RDF	C information abstraction system, relational information, software tasks, graphical views, subsystem extraction, program layering, binding analysis, data structures, relational databases, conceptual model, programming, C language, program structures, C programs, dead code elimination, relational views
18	Joachim W. Schmidt, Florian Matthes	Language Technology for Post-relational Data Systems.	IBM Symposium: Database Systems of the 90s	1990	DBLP DOI BibTeX RDF	language design principles, naming schemes, binding mechanisms, DBPL, interoperability, query languages, type systems, open systems, database programming languages
18	Richard A. Volz, Trevor N. Mudge, Gregory D. Buzzard, Padmanabhan Krishnan	Translation and Execution of Distributed Ada Programs: Is It Still Ada?	IEEE Trans. Software Eng.	1989	DBLP DOI BibTeX RDF	distributed Ada programs, memory access architecture, binding time, system homogeneity, library packages, Ada, distributed processing, programming, program interpreters, distributed execution
18	Thomas G. Moher	PROVIDE: A Process Visualization and Debugging Environment.	IEEE Trans. Software Eng.	1988	DBLP DOI BibTeX RDF	process visualization environment, PROVIDE, University of Illinois, deferred-binding program animation, process history consistency maintenance, Macintosh workstations, VAX 11/780, 4.2 BSD Unix, computer graphics, programming environments, program debugging, program debugging, program execution, interactive computer graphics, debugging environment
18	Ronald Morrison, Alan Dearle, Chris D. Marlin	Adaptive Data Stores.	Australian Joint Conference on Artificial Intelligence	1988	DBLP DOI BibTeX RDF	strong typing, adaptive systems, persistence, production systems, dynamic binding
18	Christoph Felix Geissler, Lars-Michael Schöpper, Anna Franziska Engesser, Christian Beste, Alexander Münchau, Christian Frings	Turning the Light Switch on Binding: Prefrontal Activity for Binding and Retrieval in Action Control.	J. Cogn. Neurosci.	2024	DBLP DOI BibTeX RDF
18	Aitor Valdivia, F. Javier Luque, Salomé Llabrés	Binding of Cholesterol to the N-Terminal Domain of the NPC1L1 Transporter: Analysis of the Epimerization-Related Binding Selectivity and Loop Mutations.	J. Chem. Inf. Model.	2024	DBLP DOI BibTeX RDF
18	Te Liu, Sichao Huang, Qian Zhang, Yu Xia, Manjie Zhang, Bin Sun 0005	Reconciling ASPP-p53 binding mode discrepancies through an ensemble binding framework that bridges crystallography and NMR data.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
18	Marianna Stampolaki, Ioannis Stylianakis, Helen I. Zgurskaya, Antonios Kolocouris	Study of SQ109 analogs binding to mycobacterium MmpL3 transporter using MD simulations and alchemical relative binding free energy calculations.	J. Comput. Aided Mol. Des.	2023	DBLP DOI BibTeX RDF
18	Jaikee Kumar Singh, Jai Singh, Sandeep Kumar Srivastava	Investigating the role of glycans in Omicron sub-lineages XBB.1.5 and XBB.1.16 binding to host receptor using molecular dynamics and binding free energy calculations.	J. Comput. Aided Mol. Des.	2023	DBLP DOI BibTeX RDF
18	Haiyi Chen, Yue Guo, Shengqing Ye, Jintu Zhang, Haotian Zhang, Na Liu, Rui Zhou, Tingjun Hou, Hongguang Xia, Yu Kang 0002, Mojie Duan	On the Dynamic Mechanism of Long-Flexible Fatty Acid Binding to Fatty Acid Binding Protein: Resolving the Long-Standing Debate.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
18	Riccardo Rozza, Pavel Janos, Alessandra Magistrato	Assessing the Binding Mode of a Splicing Modulator Stimulating Pre-mRNA Binding to the Plastic U2AF2 Splicing Factor.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
18	Joel Graef, Christiane Ehrt, Matthias Rarey	Binding Site Detection Remastered: Enabling Fast, Robust, and Reliable Binding Site Detection and Descriptor Calculation with DoGSite3.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
18	Huaxin Zhou, Haohao Fu, Xueguang Shao, Wensheng Cai	Binding Thermodynamics of Fourth-Generation EGFR Inhibitors Revealed by Absolute Binding Free Energy Calculations.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
18	Jie Yu, Zhaojun Li, Geng Chen, Xiangtai Kong, Jie Hu, Dingyan Wang, Duanhua Cao, Yanbei Li, Ruifeng Huo, Gang Wang, Xiaohong Liu, Hualiang Jiang, Xutong Li, Xiaomin Luo, Mingyue Zheng	Computing the relative binding affinity of ligands based on a pairwise binding comparison network.	Nat. Comput. Sci.	2023	DBLP DOI BibTeX RDF
18	Shuang Yang, Weikang Gong, Tong Zhou, Xiaohan Sun, Lei Chen, Wenxue Zhou, Chunhua Li	emPDBA: protein-DNA binding affinity prediction by combining features from binding partners and interface learned with ensemble regression model.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
18	Ke Yan 0003, Jiawei Feng, Jing Huang, Hao Wu	iDRPro-SC: identifying DNA-binding proteins and RNA-binding proteins based on subfunction classifiers.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
18	Ozgur Can Arican, Özgür Gümüs	PredDRBP-MLP: Prediction of DNA-binding proteins and RNA-binding proteins by multilayer perceptron.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
18	Ammar Ammar, Rachel Cavill, Chris T. A. Evelo, Egon L. Willighagen	PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity.	J. Cheminformatics	2023	DBLP DOI BibTeX RDF
18	Pedro A. Valiente, Satra Nim, Jinah Lee, Seungtaek Kim, Philip M. Kim	Targeting the Receptor-Binding Motif of SARS-CoV-2 with D-Peptides Mimicking the ACE2 Binding Helix: Lessons for Inhibiting Omicron and Future Variants of Concern.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
18	Zsolt Fazekas, Dóra K. Menyhárd, András Perczel	Omicron Binding Mode: Contact Analysis and Dynamics of the Omicron Receptor-Binding Domain in Complex with ACE2.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
18	Wanqian Dong, Rui Zhou, Jiawen Chen, Zhengyu Shu, Mojie Duan	Phosphorylation Regulation on the Homo-Dimeric Binding of Transactive Response DNA-Binding Protein.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
18	Dominykas Lukauskis, Marley L. Samways, Simone Aureli, Benjamin P. Cossins, Richard D. Taylor, Francesco Luigi Gervasio	Open Binding Pose Metadynamics: An Effective Approach for the Ranking of Protein-Ligand Binding Poses.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
18	Abdul Basit, Ajeet Kumar Yadav, Pradipta Bandyopadhyay	Calcium Ion Binding to the Mutants of Calmodulin: A Structure-Based Computational Predictive Model of Binding Affinity Using a Charge Scaling Approach in Molecular Dynamics Simulation.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
18	Jiaxin Han, Tingting Liu, Xinben Zhang, Yanqing Yang, Yulong Shi, Jintian Li, Minfei Ma, Weiliang Zhu, Likun Gong, Zhijian Xu	D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
18	Athar Shafiq, Farrukh Zubair, Amna Ambreen, Muhammad Suleman, Qudsia Yousafi, Zahid Rasul Niazi, Zeeshan Anwar, Abbas Khan, Anwar Mohammad, Dong-Qing Wei	Investigation of the binding and dynamic features of A.30 variant revealed higher binding of RBD for hACE2 and escapes the neutralizing antibody: A molecular simulation approach.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
18	Jun Zhang, Qingcai Chen, Bin Liu 0014	DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory.	IEEE ACM Trans. Comput. Biol. Bioinform.	2021	DBLP DOI BibTeX RDF
18	Elmeri M. Jokinen, Krishnasamy Gopinath, Sami T. Kurkinen, Olli T. Pentikäinen	Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding Domain by Molecular Dynamics Simulations in Mixed Solvents.	IEEE ACM Trans. Comput. Biol. Bioinform.	2021	DBLP DOI BibTeX RDF
18	Cecylia S. Lupala, Xuanxuan Li, Jian Lei, Hong Chen, Jianxun Qi, Haiguang Liu, Xiao-dong Su	Computational simulations reveal the binding dynamics between human ACE2 and the receptor binding domain of SARS-CoV-2 spike protein.	Quant. Biol.	2021	DBLP DOI BibTeX RDF
18	Zhaoxi Sun	SAMPL7 TrimerTrip host-guest binding poses and binding affinities from spherical-coordinates-biased simulations.	J. Comput. Aided Mol. Des.	2021	DBLP DOI BibTeX RDF
18	Michael Edmund Beck, Jacopo Negroni, Svend Matthiesen, Michael Kohnen, Christoph Riplinger	A binding mode hypothesis for prothioconazole binding to CYP51 derived from first principles quantum chemistry.	J. Comput. Aided Mol. Des.	2021	DBLP DOI BibTeX RDF
18	Ariane Nunes-Alves, Fabian Ormersbach, Rebecca C. Wade	Prediction of the Drug-Target Binding Kinetics for Flexible Proteins by Comparative Binding Energy Analysis.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
18	Zhe Huai, Zhaoxi Shen, Zhaoxi Sun	Binding Thermodynamics and Interaction Patterns of Inhibitor-Major Urinary Protein-I Binding from Extensive Free-Energy Calculations: Benchmarking AMBER Force Fields.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
18	Hehe Wu, Xiaoyong Pan, Yang Yang 0030, Hong-Bin Shen	Recognizing binding sites of poorly characterized RNA-binding proteins on circular RNAs using attention Siamese network.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
18	Eitamar Tripto, Yaron Orenstein	A comparative analysis of RNA-binding proteins binding models learned from RNAcompete, RNA Bind-n-Seq and eCLIP data.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
18	Salma Sohrabi-Jahromi, Johannes Söding	Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins.	Bioinform.	2021	DBLP DOI BibTeX RDF
18	Claire E. Plunkett, Sean D. Lawley	Bimolecular Binding Rates for Pairs of Spherical Molecules with Small Binding Sites.	Multiscale Model. Simul.	2021	DBLP DOI BibTeX RDF
18	Jianzhong Chen, Wei Wang, Haibo Sun, Laixue Pang, Huayin Bao	Binding mechanism of inhibitors to p38α MAP kinase deciphered by using multiple replica Gaussian accelerated molecular dynamics and calculations of binding free energies.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
18	Caroline Bonazza, Jiao Zhu, Roger Hasler, Rosa Mastrogiacomo, Paolo Pelosi, Wolfgang Knoll	Responses of the Pheromone-Binding Protein of the Silk Moth Bombyx mori on a Graphene Biosensor Match Binding Constants in Solution.	Sensors	2021	DBLP DOI BibTeX RDF
18	Lijun Quan, Jie Mei, Ruji He, Xiaoyu Sun 0006, Liangpeng Nie, Kailong Li, Qiang Lyu	Quantifying Intensities of Transcription Factor-DNA Binding by Learning From an Ensemble of Protein Binding Microarrays.	IEEE J. Biomed. Health Informatics	2021	DBLP DOI BibTeX RDF
18	Mohammad Nakhaee, S. Ahmad Ketabi, François M. Peeters	Tight-Binding Studio: A technical software package to find the parameters of tight-binding Hamiltonian.	Comput. Phys. Commun.	2020	DBLP DOI BibTeX RDF
18	Kalaiarasi Chinnasamy, Manjula Saravanan, Kumaradhas Poomani	Investigation of binding mechanism and downregulation of elacestrant for wild and L536S mutant estrogen receptor-α through molecular dynamics simulation and binding free energy analysis.	J. Comput. Chem.	2020	DBLP DOI BibTeX RDF
18	Jianan Lin, Zhengqing Ouyang	Large-scale analysis of the position-dependent binding and regulation of human RNA binding proteins.	Quant. Biol.	2020	DBLP DOI BibTeX RDF
18	Zhaoxi Sun, Qiao-Le He, Xiao Li, Zhengdan Zhu	SAMPL6 host-guest binding affinities and binding poses from spherical-coordinates-biased simulations.	J. Comput. Aided Mol. Des.	2020	DBLP DOI BibTeX RDF
18	Kelly Smart, Jean-Dominique Gallezot, Nabeel Nabulsi, David Labaree, Ming-Qiang Zheng, Yiyun Huang, Richard E. Carson, Ansel T. Hillmer, Patrick D. Worhunsky	Separating dopamine D2 and D3 receptor sources of [11C]-(+)-PHNO binding potential: Independent component analysis of competitive binding.	NeuroImage	2020	DBLP DOI BibTeX RDF
18	Giacomo Rossino, Ivana Orellana, Julio Caballero, Dirk Schepmann, Bernhard Wünsch, Marta Rui, Daniela Rossi, Mariela González-Avendaño, Simona Collina, Ariela Vergara Jaque	New Insights into the Opening of the Occluded Ligand-Binding Pocket of Sigma1 Receptor: Binding of a Novel Bivalent RC-33 Derivative.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
18	Daniel Cappel, Steven Jerome, Gerhard Hessler, Hans Matter	Impact of Different Automated Binding Pose Generation Approaches on Relative Binding Free Energy Simulations.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
18	Dinesh Kumar Sriramulu, Sun-Gu Lee	Combinatorial Effect of Ligand and Ligand-Binding Site Hydrophobicities on Binding Affinity.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
18	Cong Fan, Ping-pui Wong, Huiying Zhao	DStruBTarget: Integrating Binding Affinity with Structure Similarity for Ligand-Binding Protein Prediction.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
18	Nguyen Thanh Nguyen, Trung Hai Nguyen, T. Ngoc Han Pham, Nguyen Truong Huy, Mai Van Bay, Minh Quan Pham, Pham Cam Nam, Van V. Vu, Son Tung Ngo 0002	Autodock Vina Adopts More Accurate Binding Poses but Autodock4 Forms Better Binding Affinity.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
18	Lorenzo Di Rienzo, Edoardo Milanetti, Josephine Alba, Marco D'Abramo	Quantitative Characterization of Binding Pockets and Binding Complementarity by Means of Zernike Descriptors.	J. Chem. Inf. Model.	2020	DBLP DOI BibTeX RDF
18	Shu Yang, Xiaoxi Liu, Raymond T. Ng	ProbeRating: a recommender system to infer binding profiles for nucleic acid-binding proteins.	Bioinform.	2020	DBLP DOI BibTeX RDF
18	Farzin Sohraby, Mostafa Javaheri Moghadam, Masoud Aliyar, Hassan Aryapour	A boosted unbiased molecular dynamics method for predicting ligands binding mechanisms: probing the binding pathway of dasatinib to Src-kinase.	Bioinform.	2020	DBLP DOI BibTeX RDF
18	Wojtek Przepiorka, Andreas Diekmann	Binding Contracts, Non-Binding Promises and Social Feedback in the Intertemporal Common-Pool Resource Game.	Games	2020	DBLP DOI BibTeX RDF
18	Arumay Pal, Yaakov Levy	Balance between asymmetry and abundance in multi-domain DNA-binding proteins may regulate the kinetics of their binding to DNA.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
18	Federico Sevlever, Juan Pablo Di-Bella, Alejandra C. Ventura	Discriminating between negative cooperativity and ligand binding to independent sites using pre-equilibrium properties of binding curves.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
18	Zou Hui, Yang Hui-lan	Detection of Ccctc-Binding Sequence Factor at Herpes Simplex Virus Type II Binding Site Sequence.	CNIOT	2020	DBLP DOI BibTeX RDF