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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Vijini Mallawaarachchi, Michael J. Roach 0001, Przemyslaw Decewicz, Bhavya Nalagampalli Papudeshi, Sarah K. Giles, Susanna R. Grigson, George Bouras, Ryan D. Hesse, Laura K. Inglis, Abbey L. K. Hutton, Elizabeth A. Dinsdale, Robert A. Edwards |
Phables: from fragmented assemblies to high-quality bacteriophage genomes.  |
Bioinform.  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Signe Skog, Lovisa Örkenby, Unn Kugelberg, Anita Öst, Daniel Nätt |
Seqpac: a framework for sRNA-seq analysis in R using sequence-based counts. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chunyu Zhao, Boris Dimitrov, Miriam Goldman, Stephen Nayfach, Katherine S. Pollard |
MIDAS2: Metagenomic Intra-species Diversity Analysis System. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mohammad Al Olaimat, Jared Martinez, Fahad Saeed, Serdar Bozdag |
PPAD: a deep learning architecture to predict progression of Alzheimer's disease. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruohua Shi, Keyan Bi, Kai Du, Lei Ma 0008, Fang Fang, Lingyu Duan, Tingting Jiang 0001, Tie-Jun Huang 0001 |
PS-Net: human perception-guided segmentation network for EM cell membrane. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ayush Noori, Michelle M. Li, Amelia L. M. Tan, Marinka Zitnik |
Metapaths: similarity search in heterogeneous knowledge graphs via meta-paths. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jianwen Fang |
Predicting thermostability difference between cellular protein orthologs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ke Yan 0003, Yichen Guo, Bin Liu |
PreTP-2L: identification of therapeutic peptides and their types using two-layer ensemble learning framework. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yu K. Mo, Robert Lanfear, Matthew W. Hahn, Bui Quang Minh |
Updated site concordance factors minimize effects of homoplasy and taxon sampling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Pietro Hiram Guzzi, Ugo Lomoio, Pierangelo Veltri |
GTExVisualizer: a web platform for supporting ageing studies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Cristian Padron-Manrique, Aarón Vázquez-Jiménez, Diego Armando Esquivel-Hernandez, Yoscelina Estrella Martinez Lopez, Daniel Neri-Rosario, Jean Paul Sánchez-Castañeda, David Giron-Villalobos, Osbaldo Resendis-Antonio |
mb-PHENIX: diffusion and supervised uniform manifold approximation for denoizing microbiota data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xuesong Wang, Zhihang Hu, Tingyang Yu, Yixuan Wang, Ruijie Wang, Yumeng Wei, Juan Shu, Jianzhu Ma, Yu Li 0006 |
Con-AAE: contrastive cycle adversarial autoencoders for single-cell multi-omics alignment and integration. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: On the feasibility of deep learning applications using raw mass spectrometry data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Camille Juigné, Olivier Dameron, François Moreews, Florence Gondret, Emmanuelle Becker |
Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Marco Teixeira, Stephanie Pillay, Aysun Urhan, Thomas Abeel |
SHIP: identifying antimicrobial resistance gene transfer between plasmids. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: ELIXIR biovalidator for semantic validation of life science metadata. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ruogu Wang, Alex A. Lemus, Colin M. Henneberry, Yiming Ying, Yunlong Feng, Alex M. Valm |
Unmixing biological fluorescence image data with sparse and low-rank Poisson regression. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Genki Kudo, Takumi Hirao, Ryunosuke Yoshino, Yasuteru Shigeta, Takatsugu Hirokawa |
Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anna Wierczeiko, Stefan Pastore, Stefan Mündnich, Anne M. Busch, Vincent Dietrich, Mark Helm, Tamer Butto, Susanne Gerber |
NanopoReaTA: a user-friendly tool for nanopore-seq real-time transcriptional analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Shani Cohen, Eden Maximof, Shay Rokach, Mor Tadeski, Isana Veksler-Lublinsky |
sInterBase: a comprehensive database of Escherichia coli sRNA-mRNA interactions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Roberto Malinverni, David Corujo, Bernat Gel, Marcus Buschbeck |
regioneReloaded: evaluating the association of multiple genomic region sets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Gun Kaynar, Doruk Cakmakci, Caroline Bund, Julien Todeschi, Izzie-Jacques Namer, A. Ercüment Çiçek |
PiDeeL: metabolic pathway-informed deep learning model for survival analysis and pathological classification of gliomas. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Deliang Bu, Xiao Wang, Qizhai Li |
Summary statistics-based association test for identifying the pleiotropic effects with set of genetic variants. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zehao Xiong, Jiawei Luo 0001, Wanwan Shi, Ying Liu, Zhongyuan Xu, Bo Wang |
scGCL: an imputation method for scRNA-seq data based on graph contrastive learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Heng Li |
Protein-to-genome alignment with miniprot. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nikola Benes, Lubos Brim, Ondrej Huvar, Samuel Pastva, David Safránek |
Boolean network sketches: a unifying framework for logical model inference. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Saifur R. Khan, Andreea Obersterescu, Erica P. Gunderson, Babak Razani, Michael B. Wheeler, Brian J. Cox |
metGWAS 1.0: an R workflow for network-driven over-representation analysis between independent metabolomic and meta-genome-wide association studies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yevgeni Nogin, Tahir Detinis Zur, Sapir Margalit, Ilana Barzilai, Onit Alalouf, Yuval Ebenstein, Yoav Shechtman |
DeepOM: single-molecule optical genome mapping via deep learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jia-Ning Li, Guang Yang, Peng-Cheng Zhao, Xue-Xin Wei, Jian-Yu Shi |
CProMG: controllable protein-oriented molecule generation with desired binding affinity and drug-like properties. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Erik Garrison, Andrea Guarracino |
Unbiased pangenome graphs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jonathan D. Ogata, Wancen Mu, Eric S. Davis, Bingjie Xue, J. Chuck Harrell, Nathan C. Sheffield, Douglas H. Phanstiel, Michael I. Love, Mikhail G. Dozmorov |
excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jimeng Lei, Zongheng Cai, Xinyi He, Wanting Zheng, Jianxiao Liu |
An approach of gene regulatory network construction using mixed entropy optimizing context-related likelihood mutual information. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | William DeGroat, Dinesh Mendhe, Atharva Bhusari, Habiba Abdelhalim, Saman Zeeshan, Zeeshan Ahmed 0001 |
IntelliGenes: a novel machine learning pipeline for biomarker discovery and predictive analysis using multi-genomic profiles. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Matti Pirinen |
linemodels: clustering effects based on linear relationships. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ross J. Burton, Simone M. Cuff, Matt P. Morgan, Andreas Artemiou, Matthias Eberl |
GeoWaVe: geometric median clustering with weighted voting for ensemble clustering of cytometry data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Weilandt, Pierre Salvy, Maria Masid, Georgios Fengos, Robin Denhardt-Erikson, Zhaleh Hosseini, Vassily Hatzimanikatis |
Symbolic kinetic models in python (SKiMpy): intuitive modeling of large-scale biological kinetic models. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinwei He, Kun Qian, Ziqian Wang, Shirou Zeng, Hongwei Li, Wei Vivian Li |
scAce: an adaptive embedding and clustering method for single-cell gene expression data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yohsuke T. Fukai, Kyogo Kawaguchi |
LapTrack: linear assignment particle tracking with tunable metrics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Can Firtina, Nika Mansouri-Ghiasi, Joël Lindegger, Gagandeep Singh 0002, Meryem Banu Cavlak, Haiyu Mao, Onur Mutlu |
RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Conrad Leonard |
streammd: fast low-memory duplicate marking using a Bloom filter. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Olivier Mailhot, François Major, Rafael Najmanovich |
The DynaSig-ML Python package: automated learning of biomolecular dynamics-function relationships. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin Wegner, Manuel Kaulich |
ReCo: automated NGS re ad- co unting of single and combinatorial CRISPR gRNAs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kun Zhu 0023, Hong Su, Zhenling Peng, Jianyi Yang |
A unified approach to protein domain parsing with inter-residue distance matrix. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrei Dmitrenko, Michelle Reid, Nicola Zamboni |
Regularized adversarial learning for normalization of multi-batch untargeted metabolomics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuliang Pan, Yang Wang, Jihong Guan, Shuigeng Zhou |
PCGAN: a generative approach for protein complex identification from protein interaction networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ali Tugrul Balci, Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria Chikina |
An intrinsically interpretable neural network architecture for sequence-to-function learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yasamin Tabatabaee, Chao Zhang 0055, Tandy J. Warnow, Siavash Mirarab |
Phylogenomic branch length estimation using quartets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiyu Peng, Karin S. Dorman |
Accurate estimation of molecular counts from amplicon sequence data with unique molecular identifiers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Peihong Hu, Qi Ye, Weiyan Zhang, Jingping Liu, Tong Ruan |
Integration of multiple terminology bases: a multi-view alignment method using the hierarchical structure. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Timofey Prodanov, Vikas Bansal 0001 |
A multilocus approach for accurate variant calling in low-copy repeats using whole-genome sequencing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fabio Barteri, Alejandro Valenzuela, Xavier Farré, David de Juan, Gerard Muntané, Borja Esteve-Altava, Arcadi Navarro |
CAAStools: a toolbox to identify and test Convergent Amino Acid Substitutions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hartmut Häntze, Paul Horton |
Effects of spaced k-mers on alignment-free genotyping. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yonghyun Nam, Sang-Hyuk Jung, Jae-Seung Yun, Vivek Sriram, Pankhuri Singhal, Marta Byrska-Bishop, Anurag Verma, Hyunjung Shin, Woong-Yang Park, Hong-Hee Won, Dokyoon Kim |
Discovering comorbid diseases using an inter-disease interactivity network based on biobank-scale PheWAS data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chirag Jain |
Coverage-preserving sparsification of overlap graphs for long-read assembly. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Joël Lindegger, Damla Senol Cali, Mohammed Alser, Juan Gómez-Luna, Nika Mansouri-Ghiasi, Onur Mutlu |
Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jun Wu, Jian Ouyang, Haipeng Qing, Jiajia Zhou, Ruth Roberts, Rania Siam, Lan Wang, Weida Tong, Zhichao Liu, Tieliu Shi |
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Peng Chen, Jian Wang, Hongfei Lin, Di Zhao 0003, Zhihao Yang |
Few-shot biomedical named entity recognition via knowledge-guided instance generation and prompt contrastive learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jing Xu, Aidi Zhang, Fang Liu, Xiujun Zhang |
STGRNS: an interpretable transformer-based method for inferring gene regulatory networks from single-cell transcriptomic data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kaibin Huang, Shengyun Huang, Guojing Chen, Xue Li, Shawn Li, Ying Liang, Yi Gao |
An end-to-end multi-task system of automatic lesion detection and anatomical localization in whole-body bone scintigraphy by deep learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Benoit Morel, Tom A. Williams, Alexandros Stamatakis |
Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: CITEdb: a manually curated database of cell-cell interactions in human. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lathan Liou, Milena Hornburg, David S. Robertson 0001 |
Global FDR control across multiple RNAseq experiments. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lukas Heumos, Philipp Ehmele, Luis Kuhn Cuellar, Kevin Menden, Edmund Miller, Steffen Lemke 0003, Gisela Gabernet, Sven Nahnsen |
mlf-core: a framework for deterministic machine learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jack R. Leary, Yi Xu, Ashley B. Morrison, Chong Jin, Emily C. Shen, Peyton C. Kuhlers, Ye Su, Naim U. Rashid, Jen Jen Yeh, Xianlu Laura Peng |
Sub-Cluster Identification through Semi-Supervised Optimization of Rare-Cell Silhouettes (SCISSORS) in single-cell RNA-sequencing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Henry Cousins, Taryn Hall, Yinglong Guo, Luke Tso, Kathy T. H. Tzeng, Le Cong, Russ B. Altman |
Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings, with drug-repurposing applications in COVID-19. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yunhe Wang 0002, Zhuohan Yu, Shaochuan Li, Chuang Bian, Yanchun Liang, Ka-Chun Wong, Xiangtao Li |
scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Adam Midlik, Sreenath Nair, Stephen Anyango, Mandar S. Deshpande, David Sehnal, Mihaly Varadi, Sameer Velankar |
PDBImages: a command-line tool for automated macromolecular structure visualization. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yanlin Zhang, Mathieu Blanchette |
Reference panel-guided super-resolution inference of Hi-C data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Junhang Pan, Xiangchen Li, Mingwu Zhang, Yewei Lu, Yelei Zhu, Kunyang Wu, Yiwen Wu, Weixin Wang, Bin Chen, Zhengwei Liu, Xiaomeng Wang, Junshun Gao |
TransFlow: a Snakemake workflow for transmission analysis ofMycobacterium tuberculosiswhole-genome sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xavier Didelot, David Helekal, Michelle Kendall, Paolo Ribeca |
Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Barbara Bodinier, Dragana Vuckovic, Sabrina Rodrigues, Sarah Filippi, Julien Chiquet, Marc Chadeau-Hyam |
Automated calibration of consensus weighted distance-based clustering approaches using sharp. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Matee Ullah, Fazal Hadi, Jiangning Song, Dong-Jun Yu |
PScL-2LSAESM: bioimage-based prediction of protein subcellular localization by integrating heterogeneous features with the two-level SAE-SM and mean ensemble method. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicolas Buton, François Coste, Yann Le Cunff |
Predicting enzymatic function of protein sequences with attention. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Robust joint clustering of multi-omics single-cell data via multi-modal high-order neighborhood Laplacian matrix optimization. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yufeng Liu, Ye Zhong, Xuan Zhao, Lijuan Liu, Liya Ding 0001, Hanchuan Peng |
Tracing weak neuron fibers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Marcus T. Moen, Iain G. Johnston |
HyperHMM: efficient inference of evolutionary and progressive dynamics on hypercubic transition graphs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Elisabet Munté, Lidia Feliubadaló, Marta Pineda, Eva Tornero, Maribel González, José Marcos Moreno-Cabrera, Carla Roca, Joan Bales Rubio, Laura Arnaldo, Gabriel Capellá, Jose Luis Mosquera, Conxi Lázaro |
vaRHC: an R package for semi-automation of variant classification in hereditary cancer genes according to ACMG/AMP and gene-specific ClinGen guidelines. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Paolo Pellizzoni, Giulia Muzio, Karsten M. Borgwardt |
Higher-order genetic interaction discovery with network-based biological priors. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar |
pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anton Zadorozhny, Anton Smirnov, Dmitry Filimonov, Alexey Lagunin |
Prediction of pathogenic single amino acid substitutions using molecular fragment descriptors. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mario Fruzangohar, Paula Moolhuijzen, Nicolette Bakaj, Julian Taylor 0003 |
CoreDetector: a flexible and efficient program for core-genome alignment of evolutionary diverse genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chih-Hsuan Wei, Ling Luo 0001, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu |
GNorm2: an improved gene name recognition and normalization system. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ali Osman Berk Sapci, Shan Lu, Shuchen Yan, Ferhat Ay, Öznur Tastan, Sündüz Keles |
MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli, Wesley Lewis, Naftali Kaminski, Laura E. Niklason, Yuval Kluger |
Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Junmin Wang, Steven Novick |
DOSE-L1000: unveiling the intricate landscape of compound-induced transcriptional changes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrew J. Mikalsen, Jaroslaw Zola |
Coriolis: enabling metagenomic classification on lightweight mobile devices. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Trevor J. Chan, Xingjian Zhang, Michael Mak |
Biophysical informatics reveals distinctive phenotypic signatures and functional diversity of single-cell lineages. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Jackson Callaghan, Colleen H. Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric Zhou, Rohan Juneja, Yao Yao 0007, Madhumita Narayan, Kristina Hanspers, Ayushi Agrawal, Alexander R. Pico, Chunlei Wu, Andrew I. Su |
BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Steve Ma, Longxuan Fan, Sai Anish Konanki, Eva Liu, John H. Gennari, Lucian P. Smith, Joseph L. Hellerstein, Herbert M. Sauro |
VSCode-Antimony: a source editor for building, analyzing, and translating antimony models. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alperen Dalkiran, Ahmet Atakan, Ahmet Süreyya Rifaioglu, Maria Jesus Martin, Rengül Çetin-Atalay, Aybar C. Acar, Tunca Dogan, Volkan Atalay |
Transfer learning for drug-target interaction prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dennis Hecker, Fatemeh Behjati-Ardakani, Alexander Karollus, Julien Gagneur, Marcel H. Schulz |
The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhi Jin, Tingfang Wu, Taoning Chen, Deng Pan, Xuejiao Wang, Jingxin Xie, Lijun Quan, Qiang Lyu |
CAPLA: improved prediction of protein-ligand binding affinity by a deep learning approach based on a cross-attention mechanism. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Oleksandr Khoroshevskyi, Nathan Leroy, Vincent P. Reuter, Nathan C. Sheffield |
GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ziqi Chen, Baoyi Zhang, Hongyu Guo, Prashant S. Emani, Trevor Clancy, Chongming Jiang, Mark Gerstein, Xia Ning, Chao Cheng, Martin Renqiang Min |
Binding peptide generation for MHC Class I proteins with deep reinforcement learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Göksel Misirli |
libSBOLj3: a graph-based library for design and data exchange in synthetic biology. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chit Tong Lio, Gordon Grabert, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy |
Systematic analysis of alternative splicing in time course data using Spycone. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Cassandra Burdziak, Chujun Julia Zhao, Doron Haviv, Direna Alonso-Curbelo, Scott W. Lowe, Dana Pe'er |
scKINETICS: inference of regulatory velocity with single-cell transcriptomics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Haochen Zhao, Xiaoyu Zhang, Qichang Zhao, Yaohang Li, Jianxin Wang 0001 |
MSDRP: a deep learning model based on multisource data for predicting drug response. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König 0003, Kiri Choi, Herbert M. Sauro |
libRoadRunner 2.0: a high performance SBML simulation and analysis library. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Sébastien Guizard, Katarzyna Miedzinska, Jacqueline Smith, Jonathan Smith, Richard I. Kuo, Megan Davey, Alan L. Archibald, Mick Watson |
nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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