Search results for "RECOMB"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Jim C. Huang, Quaid Morris, Brendan J. Frey	Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Martin Bader, Enno Ohlebusch	Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Benny Chor, Tamir Tuller	Biological Networks: Comparison, Conservation, and Evolutionary Trees.	RECOMB	2006	DBLP DOI BibTeX RDF	tree reconstruction, relative description length, Conserved regions, networks’ comparison, compression, metabolic networks, Biological networks, network evolution
1	Steffen Grossmann, Sebastian Bauer 0002, Peter N. Robinson, Martin Vingron	An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Nicholas D. Pattengale, Bernard M. E. Moret	A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki	Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Balaji S. Srinivasan, Antal F. Novak, Jason Flannick, Serafim Batzoglou, Harley H. McAdams	Integrated Protein Interaction Networks for 11 Microbes.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Jinbo Xu, Feng Jiao, Bonnie Berger	A Parameterized Algorithm for Protein Structure Alignment.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler	RNA Secondary Structure Prediction Via Energy Density Minimization.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski	Assessing Significance of Connectivity and Conservation in Protein Interaction Networks.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Tsung-Han Chiang 0001, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe	Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Samuel A. Andersson, Jens Lagergren	Motif Yggdrasil: Sampling from a Tree Mixture Model.	RECOMB	2006	DBLP DOI BibTeX RDF
1	David Sankoff	Statistical Evaluation of Genome Rearrangement.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Sagi Snir, Lior Pachter	Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes.	RECOMB	2006	DBLP DOI BibTeX RDF
1	David Heckerman, Carl Myers Kadie, Jennifer Listgarten	Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt	Alignment Statistics for Long-Range Correlated Genomic Sequences.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Adam C. Siepel, Katherine S. Pollard, David Haussler	New Methods for Detecting Lineage-Specific Selection.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Ajay K. Royyuru, Gabriela Alexe, Daniel E. Platt, Ravi Vijaya Satya, Laxmi Parida, Saharon Rosset, Gyan Bhanot	Inferring Common Origins from mtDNA.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Stefanie Scheid, Rainer Spang	Permutation Filtering: A Novel Concept for Significance Analysis of Large-Scale Genomic Data.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Constantinos Daskalakis, Cameron Hill, Alexander Jaffe, Radu Mihaescu, Elchanan Mossel, Satish Rao	Maximal Accurate Forests from Distance Matrices.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Zheng Fu, Xin Chen 0037, Vladimir Vacic, Peng Nan, Yang Zhong, Tao Jiang 0001	A Parsimony Approach to Genome-Wide Ortholog Assignment.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Teresa M. Przytycka	An Important Connection Between Network Motifs and Parsimony Models.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Michael S. Waterman	Stan Ulam and Computational Biology.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Yun S. Song, Zhihong Ding, Dan Gusfield, Charles H. Langley, Yufeng Wu	Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald	A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Anne-Claude Gavin	Global Interaction Networks Probed by Mass Spectrometry.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Shawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato	Simulating Protein Motions with Rigidity Analysis.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato	Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Miklós Csürös, István Miklós	A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Kai Wang 0045, Ilya Nemenman, Nilanjana Banerjee, Adam A. Margolin, Andrea Califano	Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner	A New Approach to Protein Identification.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim	Efficient Enumeration of Phylogenetically Informative Substrings.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Chuong B. Do, Samuel S. Gross, Serafim Batzoglou	CONTRAlign: Discriminative Training for Protein Sequence Alignment.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna	Structural Alignment of Pseudoknotted RNA.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Xiaoduan Ye, Alan M. Friedman, Chris Bailey-Kellogg	Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Wei Xie, Nikolaos V. Sahinidis	A Branch-and-Reduce Algorithm for the Contact Map Overlap Problem.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Ling Wang, Marco Ramoni, Paola Sebastiani	Clustering Short Gene Expression Profiles.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik	Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Carl Zimmer	An Outsider's View of the Genome.	RECOMB	2006	DBLP DOI BibTeX RDF
1	John D. Kececioglu, Eagu Kim	Simple and Fast Inverse Alignment.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman (eds.)	Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings	RECOMB	2006	DBLP DOI BibTeX RDF
1	Sarah J. Aerni, Eleazar Eskin	10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB).	RECOMB	2006	DBLP DOI BibTeX RDF
1	Naftali Kaminski, Ziv Bar-Joseph	A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Roman A. Zubarev	Revealing the Proteome Complexity by Mass Spectrometry.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Michael Cameron, Yaniv Bernstein, Hugh E. Williams	Clustering Near-Identical Sequences for Fast Homology Search.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Chakra Chennubhotla 0001, Ivet Bahar	Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Jeremy Darot, Chen-Hsiang Yeang, David Haussler	Detecting the Dependent Evolution of Biosequences.	RECOMB	2006	DBLP DOI BibTeX RDF
1	Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini	A High-Throughput Approach for Associating microRNAs with Their Activity Conditions.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Susan Lindquist, Ernest Fraenkel, Tiago Outeiro, Aaron Gitler, Julie Su, Anil Cashikar, Smitha Jagadish	Yeast Cells as a Discovery Platform for Neurodegenerative Disease.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Jinbo Xu	Rapid Protein Side-Chain Packing via Tree Decomposition.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan	Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Vineet Bafna, Haixu Tang, Shaojie Zhang	Consensus Folding of Unaligned RNA Sequences Revisited.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Marshall W. Bern, David Goldberg 0001	EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Nicholas Chia, Ralf Bundschuh	A Practical Approach to Significance Assessment in Alignment with Gaps.	RECOMB	2005	DBLP DOI BibTeX RDF	Markov models and/or hidden Markov models, statistics of motifs or strings, Gumbel distribution, extreme value distribution, Kardar-Parisi-Zhang universality class, asymmetric exclusion process, statistical significance, pairwise sequence alignment
1	Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman (eds.)	Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings	RECOMB	2005	DBLP DOI BibTeX RDF
1	Wolfgang Baumeister	Mapping Molecular Landscapes Inside Cells.	RECOMB	2005	DBLP DOI BibTeX RDF
1	James J. Collins	Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Tommy Kaplan, Nir Friedman, Hanah Margalit	Predicting Transcription Factor Binding Sites Using Structural Knowledge.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Anne Bergeron, Julia Mixtacki, Jens Stoye	On Sorting by Translocations.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Eric S. Lander	Biology as Information.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Zhihong Ding, Vladimir Filkov, Dan Gusfield	A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Chen Yanover, Tomer Hertz	Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang 0047, Yu Zhang 0002, Michael S. Waterman	Alignment of Optical Maps.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Yunhu Wan, Ting Chen	A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Dmitri A. Papatsenko, Mike Levine	A Regulatory Network Controlling Drosophila Development.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Jonathan King, Cammie Haase-Pettingell, Ryan Simkovsky, Peter Weigele	Amino Acid Sequence Control of the Folding of the Parallel beta-Helix, the Simplest beta-Sheet Fold.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins 0001, Christina S. Leslie	Motif Discovery Through Predictive Modeling of Gene Regulation.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Samuel S. Gross, Michael R. Brent	Using Multiple Alignments to Improve Gene Prediction.	RECOMB	2005	DBLP DOI BibTeX RDF
1	David Altshuler	Human Genome Sequence Variation and the Inherited Basis of Common Disease.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Sören Sonnenburg, Gunnar Rätsch, Christin Schäfer	Learning Interpretable SVMs for Biological Sequence Classification.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang	RNA-RNA Interaction Prediction and Antisense RNA Target Search.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes	Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Charles DeLisi	Discovery and Annotation of Genetic Modules.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini	Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Eran Halperin, Elad Hazan	HAPLOFREQ - Estimating Haplotype Frequencies E.ciently.	RECOMB	2005	DBLP DOI BibTeX RDF
1	David Sankoff, Matthew Mazowita	Stability of Rearrangement Measures in the Comparison of Genome Sequences.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Kim R. Rasmussen, Jens Stoye, Eugene W. Myers	Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length.	RECOMB	2005	DBLP DOI BibTeX RDF
1	David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor	Information Theoretic Approaches to Whole Genome Phylogenies.	RECOMB	2005	DBLP DOI BibTeX RDF	Phylogenomics, whole genome and proteom phylogenetic, tree reconstruction, Kullback-Leibler relative entropy, divergence, distance matrix
1	Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir	The Factor Graph Network Model for Biological Systems.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Vineet Bafna, Vikas Bansal 0001	Improved Recombination Lower Bounds for Haplotype Data.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski	Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson	Recognition of Binding Patterns Common to a Set of Protein Structures.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Ari Frank, Stephen Tanner, Pavel A. Pevzner	Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Trinh N. D. Huynh, Jesper Jansson 0001, Nguyen Bao Nguyen, Wing-Kin Sung	Constructing a Smallest Refining Galled Phylogenetic Network.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Benny Chor, Tamir Tuller	Maximum Likelihood of Evolutionary Trees Is Hard.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Sing-Hoi Sze, Yue Lu, Qingwu Yang	A Polynomial Time Solvable Formulation of Multiple Sequence Alignment.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Dan Gusfield, Vikas Bansal 0001	A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman	Towards an Integrated Protein-Protein Interaction Network.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Chen-Hsiang Yeang, Tommi S. Jaakkola	Modeling the Combinatorial Functions of Multiple Transcription Factors.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Tobias H. Klöpper, Pete J. Lockhart, Mike A. Steel	Reconstruction of Reticulate Networks from Gene Trees.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Marshall W. Bern, Jindong Chen, Hao Chi Wong	Avoiding Local Optima in Single Particle Reconstruction.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand	Graph Theoretical Insights into Evolution of Multidomain Proteins.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot	A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang, Wen-Jin Wu, Tai-Huang Huang, Ting-Yi Sung, Wen-Lian Hsu	RIBRA-An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, Vanathi Gopalakrishnan	Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition.	RECOMB	2005	DBLP DOI BibTeX RDF
1	Carlos Bustamante	Recent advances on the manipulation of single biomolecules.	RECOMB	2004	DBLP DOI BibTeX RDF
1	Michael A. Erdmann	Protein similarity from knot theory and geometric convolution.	RECOMB	2004	DBLP DOI BibTeX RDF	writhing, homotopy, protein structure, homology, robot motion planning, knot theory
1	Philip E. Bourne, Dan Gusfield (eds.)	Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004, San Diego, California, USA, March 27-31, 2004	RECOMB	2004	DBLP DOI BibTeX RDF
1	Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald	A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme.	RECOMB	2004	DBLP DOI BibTeX RDF	enzyme design, fluorescence binding assay, molecular ensemble, non-ribosomal peptide synthetase, protein flexibility, protein-ligand binding, protein design
1	William McGinnis	Evolutionary change in developmental genetic networks.	RECOMB	2004	DBLP DOI BibTeX RDF

Publications at "RECOMB"( http://dblp.L3S.de/Venues/RECOMB )