Search results for "binding"

Hits ?▲	Authors	Title	Venue	Year	Link
18	David Bray	Computational approaches to discover and characterize transcription regulatory complex binding from protein-binding microarray-based experiments		2020	RDF
18	Armayau Zango Umar	Adaptable software reuse: binding time aware modelling language to support variations of feature binding time in software product line engineering.		2020	RDF
18	Lélia Polit	Régulation de l'expression génique par le facteur de transcription SPI1/PU.1 dans l'érythroleucémie : mécanismes de répression des gènes par sa liaison à l'ADN, conséquences de sa liaison à l'ARN. (Regulation of gene expression by the transcription factor SPI-1/PU.1 in erythroleukemia : mechanisms of gene repression by its binding to DNA, consequences of its binding to RNA).		2020	RDF
18	Wei Wang 0166, Keliang Li, Hehe Lv, Hongjun Zhang, Shiguang Zhang, Yun Zhou, Junwei Huang	Analyzing the Surface Structure of the Binding Domain on DNA and RNA Binding Proteins.	IEEE Access	2019	DBLP DOI BibTeX RDF
18	Dongdong Wang, Jingwei Weng, Wenning Wang	An unconventional ligand-binding mechanism of substrate-binding proteins: MD simulation and Markov state model analysis of BtuF.	J. Comput. Chem.	2019	DBLP DOI BibTeX RDF
18	Mahendra Thapa, Eric Johnson, Mark Rance	Effect of monovalent ion binding on molecular dynamics of the S100-family calcium-binding protein calbindin D9k.	J. Comput. Chem.	2019	DBLP DOI BibTeX RDF
18	Saad Raza, Kara E. Ranaghan, Marc van der Kamp, Christopher J. Woods, Adrian J. Mulholland, Syed Sikander Azam	Visualizing protein-ligand binding with chemical energy-wise decomposition (CHEWD): application to ligand binding in the kallikrein-8 S1 Site.	J. Comput. Aided Mol. Des.	2019	DBLP DOI BibTeX RDF
18	Thomas Litfin, Yuedong Yang, Yaoqi Zhou	SPOT-Peptide: Template-Based Prediction of Peptide-Binding Proteins and Peptide-Binding Sites.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
18	Ozlem Erdas-Cicek, Ali Osman Atac, A. Selen Gurkan-Alp, Erdem Buyukbingol, Ferda Nur Alpaslan	Three-Dimensional Analysis of Binding Sites for Predicting Binding Affinities in Drug Design.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
18	Joel Wahl, Martin Smiesko	Assessing the Predictive Power of Relative Binding Free Energy Calculations for Test Cases Involving Displacement of Binding Site Water Molecules.	J. Chem. Inf. Model.	2019	DBLP DOI BibTeX RDF
18	Leo William Norval, Stefan Daniel Krämer, Mingjie Gao, Tobias Herz, Jianyu Li, Christin Rath, Johannes Wöhrle, Stefan Günther, Günter Roth	KOFFI and Anabel 2.0 - a new binding kinetics database and its integration in an open-source binding analysis software.	Database J. Biol. Databases Curation	2019	DBLP DOI BibTeX RDF
18	Jan Gosmann, Chris Eliasmith	Vector-Derived Transformation Binding: An Improved Binding Operation for Deep Symbol-Like Processing in Neural Networks.	Neural Comput.	2019	DBLP DOI BibTeX RDF
18	Lei Deng 0002, Youzhi Liu, Yechuan Shi, Hui Liu 0026	A deep neural network approach using distributed representations of RNA sequence and structure for identifying binding site of RNA-binding proteins.	BIBM	2019	DBLP DOI BibTeX RDF
18	Christina Athanasiou, Sofia Vasilakaki, Dimitris Dellis, Zoe Cournia	Using physics-based pose predictions and free energy perturbation calculations to predict binding poses and relative binding affinities for FXR ligands in the D3R Grand Challenge 2.	J. Comput. Aided Mol. Des.	2018	DBLP DOI BibTeX RDF
18	Junchao Xia, William F. Flynn, Ronald M. Levy	Improving Prediction Accuracy of Binding Free Energies and Poses of HIV Integrase Complexes Using the Binding Energy Distribution Analysis Method with Flattening Potentials.	J. Chem. Inf. Model.	2018	DBLP DOI BibTeX RDF
18	Axel Rudling, Adolfo Orro, Jens Carlsson	Prediction of Ordered Water Molecules in Protein Binding Sites from Molecular Dynamics Simulations: The Impact of Ligand Binding on Hydration Networks.	J. Chem. Inf. Model.	2018	DBLP DOI BibTeX RDF
18	Qi Wu 0016, Zhenling Peng, Yang Zhang 0040, Jianyi Yang	COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking.	Nucleic Acids Res.	2018	DBLP DOI BibTeX RDF
18	Dino Franklin	Molecular Dynamic Simulations Suggest that P152R Mutation Within MeCP2 Can Lead to Higher DNA Binding Affinity and Loss of Selective Binding to Methylated DNA.	PACBB	2018	DBLP DOI BibTeX RDF
18	Florentina Tofoleanu, Juyong Lee, Frank C. Pickard IV, Gerhard König, Jing Huang 0004, Minkyung Baek, Chaok Seok, Bernard R. Brooks	Absolute binding free energies for octa-acids and guests in SAMPL5 - Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge.	J. Comput. Aided Mol. Des.	2017	DBLP DOI BibTeX RDF
18	Xianjin Xu, Chengfei Yan, Xiaoqin Zou	Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015.	J. Comput. Aided Mol. Des.	2017	DBLP DOI BibTeX RDF
18	Soumendranath Bhakat, Pär Söderhjelm	Resolving the problem of trapped water in binding cavities: prediction of host-guest binding free energies in the SAMPL5 challenge by funnel metadynamics.	J. Comput. Aided Mol. Des.	2017	DBLP DOI BibTeX RDF
18	Babitha Machireddy, Gurmannat Kalra, Subash Jonnalagadda, Kandalam Ramanujachary, Chun Wu	Probing the Binding Pathway of BRACO19 to a Parallel-Stranded Human Telomeric G-Quadruplex Using Molecular Dynamics Binding Simulation with AMBER DNA OL15 and Ligand GAFF2 Force Fields.	J. Chem. Inf. Model.	2017	DBLP DOI BibTeX RDF
18	Ka-Chun Wong, Chengbin Peng, Yue Li 0017	Evolving Transcription Factor Binding Site Models From Protein Binding Microarray Data.	IEEE Trans. Cybern.	2017	DBLP DOI BibTeX RDF
18	Jinan Wang, Zihu Guo, Yingxue Fu, Ziyin Wu, Chao Huang 0030, Chunli Zheng, Piar Ali Shar, Zhenzhong Wang, Wei Xiao, Yonghua Wang	Weak-binding molecules are not drugs? - toward a systematic strategy for finding effective weak-binding drugs.	Briefings Bioinform.	2017	DBLP DOI BibTeX RDF
18	Antonia Stank, Daria B. Kokh, Max Horn, Elena Sizikova, Rebecca Neil, Joanna Panecka, Stefan Richter 0002, Rebecca C. Wade	TRAPP webserver: predicting protein binding site flexibility and detecting transient binding pockets.	Nucleic Acids Res.	2017	DBLP DOI BibTeX RDF
18	Bao Wang, Zhixiong Zhao, Duc Duy Nguyen, Guo-Wei Wei 0001	Feature functional theory - binding predictor (FFT-BP) for the blind prediction of binding free energies.	CoRR	2017	DBLP BibTeX RDF
18	Prabodh Ranjan, Sivakumar Prasanth Kumar, Vijayakrishna Kari, Prakash Chandra Jha 0002	Exploration of interaction zones of β-tubulin colchicine binding domain of helminths and binding mechanism of anthelmintics.	Comput. Biol. Chem.	2017	DBLP DOI BibTeX RDF
18	Nohad Gresh, David Perahia, Benoit de Courcy, Johanna Foret, Celine Roux, Lea El-Khoury, Jean-Philip Piquemal, Laurent Salmon	Complexes of a Zn-metalloenzyme binding site with hydroxamate-containing ligands. A case for detailed benchmarkings of polarizable molecular mechanics/dynamics potentials when the experimental binding structure is unknown.	J. Comput. Chem.	2016	DBLP DOI BibTeX RDF
18	Sreeram Krishnan, P. Rani	Polymorphism in the ligand binding domain of rage alters its binding affinity towards Aβ42 peptides: an in-silico study.	Int. J. Bioinform. Res. Appl.	2016	DBLP DOI BibTeX RDF
18	Seungpyo Hong, Dongsup Kim	Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds.	Bioinform.	2016	DBLP DOI BibTeX RDF
18	Ziyi Guo, Brian Yuan Chen	A map of binding cavity conformations reveals differences in binding specificity.	BIBM	2016	DBLP DOI BibTeX RDF
18	Jun-Hwan Huh, Dong-Hyun Kim 0011, Jong-Deok Kim	oneM2M: Extension of protocol binding: Reuse of binding protocol's legacy services.	ICOIN	2016	DBLP DOI BibTeX RDF
18	Santosh Kumar Sahu, Himadri Gourav Behuria, Sangam Gupta, Babita Sahoo	Sequence Analysis of a Subset of Plasma Membrane Raft Proteome Containing CXXC Metal Binding Motifs: Metal Binding Proteins.	Int. J. Knowl. Discov. Bioinform.	2015	DBLP DOI BibTeX RDF
18	Man Hon Wong 0001, Ho-Yin Antonio Sze-To, Leung-Yau Peter Lo, Tak-Ming Cyrus Chan, Kwong-Sak Leung	Discovering Binding Cores in Protein-DNA Binding Using Association Rule Mining with Statistical Measures.	IEEE ACM Trans. Comput. Biol. Bioinform.	2015	DBLP DOI BibTeX RDF
18	Xin Ma 0003, Jing Guo, Ke Xiao, Xiao Sun 0006	PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor.	IEEE ACM Trans. Comput. Biol. Bioinform.	2015	DBLP DOI BibTeX RDF
18	Emna Harigua-Souiai, Isidro Cortes-Ciriano, Nathan Desdouits, Thérèse E. Malliavin, Ikram Guizani, Michael Nilges, Arnaud Blondel, Guillaume Bouvier	Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
18	Wenjuan Huang, Nikolay Blinov, David S. Wishart, Andriy Kovalenko 0001	Role of Water in Ligand Binding to Maltose-Binding Protein: Insight from a New Docking Protocol Based on the 3D-RISM-KH Molecular Theory of Solvation.	J. Chem. Inf. Model.	2015	DBLP DOI BibTeX RDF
18	Quan Van Vuong, Tin Trung Nguyen, Mai Suan Li	A New Method for Navigating Optimal Direction for Pulling Ligand from Binding Pocket: Application to Ranking Binding Affinity by Steered Molecular Dynamics.	J. Chem. Inf. Model.	2015	DBLP DOI BibTeX RDF
18	Maria Pechlaner, Chris Oostenbrink	Multiple Binding Poses in the Hydrophobic Cavity of Bee Odorant Binding Protein AmelOBP14.	J. Chem. Inf. Model.	2015	DBLP DOI BibTeX RDF
18	Chao Yang 0023, Shilei Zhang, Ping He, Congcong Wang, Jian Huang 0004, Peng Zhou 0003	Self-Binding Peptides: Folding or Binding?	J. Chem. Inf. Model.	2015	DBLP DOI BibTeX RDF
18	Aqeel Ahmed, Richard D. Smith, Jordan J. Clark, James B. Dunbar Jr., Heather A. Carlson	Recent improvements to Binding MOAD: a resource for protein-ligand binding affinities and structures.	Nucleic Acids Res.	2015	DBLP DOI BibTeX RDF
18	Sha He, Hai Zhang, Haihua Liu, Hao Zhu	LongTarget: a tool to predict lncRNA DNA-binding motifs and binding sites via Hoogsteen base-pairing analysis.	Bioinform.	2015	DBLP DOI BibTeX RDF
18	Clifford W. Fong	Binding energies of tyrosine kinase inhibitors: Error assessment of computational methods for imatinib and nilotinib binding.	Comput. Biol. Chem.	2015	DBLP DOI BibTeX RDF
18	Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han	Predicting protein-binding RNA nucleotides with consideration of binding partners.	Comput. Methods Programs Biomed.	2015	DBLP DOI BibTeX RDF
18	Vincent A. Billock, Brian H. Tsou	Bridging the Divide between Sensory Integration and Binding Theory: Using a Binding-like Neural Synchronization Mechanism to Model Sensory Enhancements during Multisensory Interactions.	J. Cogn. Neurosci.	2014	DBLP DOI BibTeX RDF
18	Huiying Zhao, Yuedong Yang, Mark von Itzstein, Yaoqi Zhou	Carbohydrate-binding protein identification by coupling structural similarity searching with binding affinity prediction.	J. Comput. Chem.	2014	DBLP DOI BibTeX RDF
18	Carmen Maria Livi, Enrico Blanzieri	Protein-specific prediction of mRNA binding using RNA sequences, binding motifs and predicted secondary structures.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
18	Qian Liu, Steven C. H. Hoi, Chee Keong Kwoh 0001, Limsoon Wong, Jinyan Li 0001	Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
18	Julien Vezoli, Kwamivi Dzahini, Nicolas Costes 0001, Charles R. E. Wilson, Karim Fifel, Howard M. Cooper, Henry Kennedy 0002, Emmanuel Procyk	Increased DAT binding in the early stage of the dopaminergic lesion: A longitudinal [11C]PE2I binding study in the MPTP-monkey.	NeuroImage	2014	DBLP DOI BibTeX RDF
18	Kunihiro Kitamura, Yunoshin Tamura, Tomokazu Ueki, Koji Ogata, Shigeho Noda, Ryutaro Himeno, Hiroshi Chuman	Binding Free-Energy Calculation Is a Powerful Tool for Drug Optimization: Calculation and Measurement of Binding Free Energy for 7-Azaindole Derivatives to Glycogen Synthase Kinase-3β.	J. Chem. Inf. Model.	2014	DBLP DOI BibTeX RDF
18	Ann-Beth Nørholm, Pierre Francotte, Eric Goffin, Iuliana Botez, Laurence Danober, Pierre Lestage, Bernard Pirotte, Jette S. Kastrup, Lars Olsen, Chris Oostenbrink	Thermodynamic Characterization of New Positive Allosteric Modulators Binding to the Glutamate Receptor A2 Ligand-Binding Domain: Combining Experimental and Computational Methods Unravels Differences in Driving Forces.	J. Chem. Inf. Model.	2014	DBLP DOI BibTeX RDF
18	Inbal Paz, Idit Kosti, Manuel Ares, Melissa S. Cline, Yael Mandel-Gutfreund	RBPmap: a web server for mapping binding sites of RNA-binding proteins.	Nucleic Acids Res.	2014	DBLP DOI BibTeX RDF
18	Guzmán Sánchez, David Curiel, Alberto Tárraga, Pedro Molina	Anion Binding Studies on Receptors Derived from the Indolo[2, 3-a]carbazole Scaffold Having Different Binding Cavity Sizes.	Sensors	2014	DBLP DOI BibTeX RDF
18	Shuo Gu, Daniel-Adriano Silva, Luming Meng, Alexander Yue, Xuhui Huang	Quantitatively Characterizing the Ligand Binding Mechanisms of Choline Binding Protein Using Markov State Model Analysis.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
18	Daniel Cappel, Vassilios Myrianthopoulos, Emmanuel Mikros, Woody Sherman	Impact of binding site waters on inhibitor design: contemplating a novel inverse binding mode of indirubin derivatives in DYRK kinases.	J. Cheminformatics	2014	DBLP DOI BibTeX RDF
18	Yuan Zhu, Weiqiang Zhou, Dao-Qing Dai, Hong Yan 0001	Identification of DNA-Binding and Protein-Binding Proteins Using Enhanced Graph Wavelet Features.	IEEE ACM Trans. Comput. Biol. Bioinform.	2013	DBLP DOI BibTeX RDF
18	Jianyi Yang, Ambrish Roy, Yang Zhang 0040	Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment.	Bioinform.	2013	DBLP DOI BibTeX RDF
18	Ivan V. Kulakovskiy, Victor G. Levitsky, Dmitry Yu. Oshchepkov, Leonid Bryzgalov, Ilya E. Vorontsov, Vsevolod J. Makeev	From binding motifs in Chip-seq Data to Improved Models of transcription factor binding Sites.	J. Bioinform. Comput. Biol.	2013	DBLP DOI BibTeX RDF
18	Vivek Kumar 0003, Masilamani Elizabeth Sobhia	Characterisation of the flexibility of substrate binding loop in the binding of direct InhA inhibitors.	Int. J. Comput. Biol. Drug Des.	2013	DBLP DOI BibTeX RDF
18	Adrien Nicolaï, Patrice Delarue, Patrick Senet	Decipher the Mechanisms of Protein Conformational Changes Induced by Nucleotide Binding through Free-Energy Landscape Analysis: ATP Binding to Hsp70.	PLoS Comput. Biol.	2013	DBLP DOI BibTeX RDF
18	Tzu-Hsien Yang, Wei-Sheng Wu	Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data.	BMC Syst. Biol.	2013	DBLP DOI BibTeX RDF
18	Yu-Lin Wang, Chih-Cheng Huang, You-Ren Hsu, Yen-Wen Kang	Identification of ligand-receptor binding affinity using AlGaN/GaN high electron mobility transistors and binding-site models.	NEMS	2013	DBLP DOI BibTeX RDF
18	Ozlem Erdas	Predicting the binding affinities of drug-protein interaction by analyzing the images of binding sites (Bağlanma alanlarının görüntülerini inceleyerek ilaç-protein etkileşiminin bağlanma eğiliminin tahmin edilmesi)		2013	RDF
18	Julia Meier	Design, Synthese und Analytik peptidischer CD4-Mimetika sowie Analyse ihrer Bindung an das HIV-Hüllprotein gp120 (Design, Synthesis, Analysis and Binding Assays of Peptides Mimicking the Binding Site of CD4 for HIV Envelope Protein gp120) (PDF / PS)		2013	RDF
18	Kuan-Wei Wu, Po-Chin Chen, Jun Wang 0053, Ying-Chieh Sun	Computation of relative binding free energy for an inhibitor and its analogs binding with Erk kinase using thermodynamic integration MD simulation.	J. Comput. Aided Mol. Des.	2012	DBLP DOI BibTeX RDF
18	Hui Sun Lee, Sunhwan Jo, Hyun-Suk Lim, Wonpil Im	Application of Binding Free Energy Calculations to Prediction of Binding Modes and Affinities of MDM2 and MDMX Inhibitors.	J. Chem. Inf. Model.	2012	DBLP DOI BibTeX RDF
18	Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Chien-Yu Chen 0001, Darby Tien-Hao Chang	DBD2BS: connecting a DNA-binding protein with its binding sites.	Nucleic Acids Res.	2012	DBLP DOI BibTeX RDF
18	Zhong-Ru Xie, Ming-Jing Hwang	Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles.	Bioinform.	2012	DBLP DOI BibTeX RDF
18		Securing Binding Update in Mobile IPv6 Using Private Key Base Binding Update Protocol	CoRR	2012	DBLP BibTeX RDF
18	Yuchun Guo, Shaun Mahony, David K. Gifford	High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints.	PLoS Comput. Biol.	2012	DBLP DOI BibTeX RDF
18	Hilal Kazan	Inferring the Binding Preferences of RNA-binding Proteins.		2012	RDF
18	David Schueler	World Variable Binding and Beta-Binding.	J. Semant.	2011	DBLP DOI BibTeX RDF
18	Maxim Totrov	Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
18	Shan He, Luhua Lai	Molecular Docking and Competitive Binding Study Discovered Different Binding Modes of Microsomal Prostaglandin E Synthase-1 Inhibitors.	J. Chem. Inf. Model.	2011	DBLP DOI BibTeX RDF
18	Daniel Cappel, Rickard Wahlström, Ruth Brenk, Christoph A. Sotriffer	Probing the Dynamic Nature of Water Molecules and Their Influences on Ligand Binding in a Model Binding Site.	J. Chem. Inf. Model.	2011	DBLP DOI BibTeX RDF
18	Mohsen Khorshid, Christoph Rodak, Mihaela Zavolan	CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
18	Qian Liu, Steven C. H. Hoi, Chinh T. T. Su, Zhenhua Li, Chee Keong Kwoh 0001, Limsoon Wong, Jinyan Li 0001	Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?	Bioinform.	2011	DBLP DOI BibTeX RDF
18	Unyanee Poolsap, Yuki Kato, Kengo Sato, Tatsuya Akutsu	Using binding Profiles to Predict binding sites of Target RNAs.	J. Bioinform. Comput. Biol.	2011	DBLP DOI BibTeX RDF
18	Avraham Ben-Shimon, Masha Y. Niv	Deciphering the Arginine-Binding Preferences at the Substrate-Binding Groove of Ser/Thr Kinases by Computational Surface Mapping.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
18	Tianyun Liu, Russ B. Altman	Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
18	Michael Hamilton, A. S. N. Reddy, Asa Ben-Hur	Kernel methods for Calmodulin binding and binding site prediction.	BCB	2011	DBLP DOI BibTeX RDF
18	Wei-Yao Chou, Wei-I Chou, Tun-Wen Pai, Shu-Chuan Lin, Ting-Ying Jiang, Chuan Yi Tang, Margaret Dah-Tsyr Chang	Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules.	Bioinform.	2010	DBLP DOI BibTeX RDF
18	Daniel B. Roche, Stuart J. Tetchner, Liam J. McGuffin	The binding site distance test score: a robust method for the assessment of predicted protein binding sites.	Bioinform.	2010	DBLP DOI BibTeX RDF
18	Abhilash Mohan, Sharmila Anishetty, Pennathur Gautam	Global metal-ion Binding protein Fingerprint: a Method to Identify Motif-Less metal-ion Binding proteins.	J. Bioinform. Comput. Biol.	2010	DBLP DOI BibTeX RDF
18	Hilal Kazan, Debashish Ray, Esther T. Chan, Timothy R. Hughes, Quaid Morris	RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins.	PLoS Comput. Biol.	2010	DBLP DOI BibTeX RDF
18	Oscar Harari, Sun-Yang Park, Henry Huang, Eduardo A. Groisman, Igor Zwir	Defining the Plasticity of Transcription Factor Binding Sites by Deconstructing DNA Consensus Sequences: The PhoP-Binding Sites among Gamma/Enterobacteria.	PLoS Comput. Biol.	2010	DBLP DOI BibTeX RDF
18	Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng	Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation.	Genom. Proteom. Bioinform.	2009	DBLP DOI BibTeX RDF
18	Holly Freedman, J. Torin Huzil, Tyler Luchko, Richard F. Luduena, Jack A. Tuszynski	Identification and Characterization of an Intermediate Taxol Binding Site Within Microtubule Nanopores and a Mechanism for Tubulin Isotype Binding Selectivity.	J. Chem. Inf. Model.	2009	DBLP DOI BibTeX RDF
18	Hao Zhang, Ole Lund, Morten Nielsen 0001	The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding.	Bioinform.	2009	DBLP DOI BibTeX RDF
18	Yue Zhao, David Granas, Gary D. Stormo	Inferring Binding Energies from Selected Binding Sites.	PLoS Comput. Biol.	2009	DBLP DOI BibTeX RDF
18	Matteo Comin, Concettina Guerra, Frank Dellaert	Binding Balls: Fast Detection of Binding Sites Using a Property of Spherical Fourier Transform.	J. Comput. Biol.	2009	DBLP DOI BibTeX RDF
18	Aymeric Devergie, Frédéric Berthommier, Nicolas Grimault	Pairing audio speech and various visual displays: binding or not binding?	AVSP	2009	DBLP BibTeX RDF
18	Ami Yi-Ching Yang, Ricardo L. Mancera	Molecular dynamics simulations of ligand-induced backbone conformational changes in the binding site of the periplasmic lysine-, arginine-, ornithine-binding protein.	J. Comput. Aided Mol. Des.	2008	DBLP DOI BibTeX RDF
18	Jakub Orzechowski Westholm, Feifei Xu, Hans Ronne, Henryk Jan Komorowski	Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
18	Edward J. Bertaccini, Erik Lindahl, Titia Sixma, James R. Trudell	Effect of Cobratoxin Binding on the Normal Mode Vibration within Acetylcholine Binding Protein.	J. Chem. Inf. Model.	2008	DBLP DOI BibTeX RDF
18	Gerardo Canfora, Massimiliano Di Penta, Raffaele Esposito, Maria Luisa Villani	A framework for QoS-aware binding and re-binding of composite web services.	J. Syst. Softw.	2008	DBLP DOI BibTeX RDF
18	Andrew C. Doxey, Zhenyu Cheng 0002, Brendan J. McConkey	Discrimination of Insoluble-Carbohydrate Binding Proteins and Their Binding Sites Using a 3D Motif Detection Method.	BIBM	2008	DBLP DOI BibTeX RDF
18	Shijun Zhong, Alexander D. MacKerell Jr.	Binding Response: A Descriptor for Selecting Ligand Binding Site on Protein Surfaces.	J. Chem. Inf. Model.	2007	DBLP DOI BibTeX RDF
18	Seungwoo Hwang, Zhenkun Gou, Igor B. Kuznetsov	DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins.	Bioinform.	2007	DBLP DOI BibTeX RDF
18	Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton	Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.	Bioinform.	2007	DBLP DOI BibTeX RDF