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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Leonard Dervishi, Wenbiao Li, Anisa Halimi, Xiaoqian Jiang, Jaideep Vaidya, Erman Ayday |
Privacy preserving identification of population stratification for collaborative genomic research.  |
Bioinform.  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ling Luo 0001, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen 0001, Zhiyong Lu |
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexandru Oarga, Bridget Bannerman, Jorge Júlvez |
CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dan Guo, Melanie Christine Föll, Kylie A. Bemis, Olga Vitek |
A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jarno N. Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, Simon J. Puglisi |
Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mengbo Li, Gordon K. Smyth |
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bastian Pfeifer, Hryhorii Chereda, Roman Martin, Anna Saranti, Sandra Clemens, Anne-Christin Hauschild, Tim Beißbarth, Andreas Holzinger, Dominik Heider |
Ensemble-GNN: federated ensemble learning with graph neural networks for disease module discovery and classification. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Renming Liu, Matthew J. Hirn, Arjun Krishnan |
Accurately modeling biased random walks on weighted networks using node2vec+. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Huixi Zou, Tianli Sun, Bangqun Jin, Shengqin Wang |
sBGC-hm: an atlas of secondary metabolite biosynthetic gene clusters from the human gut microbiome. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Déborah Caucheteur, Zoë May Pendlington, Paola Roncaglia, Julien Gobeill, Luc Mottin, Nicolas Matentzoglu, Donat Agosti, David Osumi-Sutherland, Helen E. Parkinson, Patrick Ruch |
COVoc and COVTriage: novel resources to support literature triage. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anna Nadtochiy, Peter Luu, Scott E. Fraser, Thai V. Truong |
VoDEx: a Python library for time annotation and management of volumetric functional imaging data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Artyom A. Egorov, Gemma Catherine Atkinson |
uORF4u: a tool for annotation of conserved upstream open reading frames. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Thomas Büchler, Jannik Olbrich, Enno Ohlebusch |
Efficient short read mapping to a pangenome that is represented by a graph of ED strings. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kerr Ding, Sheng Wang 0012, Yunan Luo |
Supervised biological network alignment with graph neural networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin Larralde, Georg Zeller |
PyHMMER: a Python library binding to HMMER for efficient sequence analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Rockwell J. Weiner, Chirag M. Lakhani, David A. Knowles, Gamze Gürsoy |
LDmat: efficiently queryable compression of linkage disequilibrium matrices. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Edgar E. Robles, Ye Jin, Padhraic Smyth, Richard H. Scheuermann, Jack D. Bui, Huan-You Wang, Jean Oak, Yu Qian |
A cell-level discriminative neural network model for diagnosis of blood cancers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jaromir Sant, Paul A. Jenkins, Jere Koskela, Dario Spanò |
EWF: simulating exact paths of the Wright-Fisher diffusion. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Haoting Zhang, Carl Henrik Ek, Magnus Rattray, Marta Milo |
SynBa: improved estimation of drug combination synergies with uncertainty quantification. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | John C. Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A Mathé |
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Heather Marriott, Renata Kabiljo, Ahmad Al Khleifat, Richard J. B. Dobson, Ammar Al-Chalabi, Alfredo Iacoangeli |
DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Michal Zurkowski, Maciej Antczak, Marta Szachniuk |
High-quality, customizable heuristics for RNA 3D structure alignment. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Piyumi R. Amarasinghe, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arthur M. Lesk, Arun Siddharth Konagurthu |
Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Shaojun Pan, Xing-Ming Zhao, Luís Pedro Coelho |
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Caleb A. Class, Caiden J. Lukan, Christopher A. Bristow, Kim-Anh Do |
Easy NanoString nCounter data analysis with the NanoTube. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Charles Tapley Hoyt, Amelia L. Hoyt, Benjamin M. Gyori |
Prediction and curation of missing biomedical identifier mappings with Biomappings. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Karel J. van der Weg, Holger Gohlke |
TopEnzyme: a framework and database for structural coverage of the functional enzyme space. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jae-Won Lee, Jong-Hyun Won, Seonggwang Jeon, Yujin Choo, Yubin Yeon, Jin-Seon Oh, Minsoo Kim, Seonhwa Kim, InSuk Joung, Cheongjae Jang, Sung Jong Lee, Tae Hyun Kim, Kyong Hwan Jin, Giltae Song, Eun-Sol Kim, Jejoong Yoo, Eunok Paek, Yung-Kyun Noh, Keehyoung Joo |
DeepFold: enhancing protein structure prediction through optimized loss functions, improved template features, and re-optimized energy function. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Emanuel Cunha, Davide Lagoa, José P. Faria, Filipe Liu, Christopher S. Henry, Oscar Días |
TranSyT, an innovative framework for identifying transport systems. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Qian Wang, Zhiqiang Wei, Xiaotong Hu, Zhuoya Wang, Yujie Dong, Hao Liu |
Molecular generation strategy and optimization based on A2C reinforcement learning in de novo drug design. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Peishun Jiao, Beibei Wang, Xuan Wang, Bo Liu, Yadong Wang, Junyi Li |
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Siebren Frölich, Maarten van der Sande, Tilman Schäfers, Simon J. van Heeringen |
genomepy: genes and genomes at your fingertips. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaokun Hong, Ningshan Li, Jiyang Lv, Yan Zhang, Jing Li 0107, Jian Zhang 0037, Hai-Feng Chen |
PTMint database of experimentally verified PTM regulation on protein-protein interaction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuxin Li, Xuhua Liu, Xueyan Jia, Tao Jiang, Jianghao Wu, Qianlong Zhang, Junhuai Li, Xiangning Li, Anan Li |
A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Omid Rohanian, Mohammadmahdi Nouriborji, Samaneh Kouchaki, David A. Clifton |
On the effectiveness of compact biomedical transformers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jian Cheng, Christian Maltecca, Paul M. Vanraden, Jeffrey R. O'Connell, Li Ma, Jicai Jiang |
SLEMM: million-scale genomic predictions with window-based SNP weighting. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yao-zhong Zhang, Zeheng Bai, Seiya Imoto |
Investigation of the BERT model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhuoqing Fang, Xinyuan Liu, Gary Peltz |
GSEApy: a comprehensive package for performing gene set enrichment analysis in Python. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Luca R. Genz, Thomas Mulvaney, Sanjana Nair, Maya Topf |
PICKLUSTER: a protein-interface clustering and analysis plug-in for UCSF ChimeraX. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu |
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiangshan Liang, Luchen Deng, Shize Chen, Yimin Wang, Zongcai Ruan, Lingli Zhang |
Vaa3D-x for cross-platform teravoxel-scale immersive exploration of multidimensional image data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ping-Han Hsieh, Camila Miranda Lopes-Ramos, Manuela Zucknick, Geir Kjetil Sandve, Kimberly Glass, Marieke L. Kuijjer |
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Asmita Roy, Jun Chen, Xianyang Zhang |
A general framework for powerful confounder adjustment in omics association studies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jean-Pierre Borg, Jacques Colinge, Patrice Ravel |
Modular response analysis reformulated as a multilinear regression problem. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sarah G. Ayton, Victor Treviño |
MuTATE - an R package for comprehensive multi-objective molecular modeling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Philip T. L. C. Clausen |
Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin C. Frith, Jim Shaw, John L. Spouge |
How to optimally sample a sequence for rapid analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bin Huang, Tingwen Fan, Kaiyue Wang, Haicang Zhang, Chungong Yu, Shuyu Nie, Yangshuo Qi, Wei-Mou Zheng, Jian Han, Zheng Fan, Shiwei Sun, Sheng Ye, Huaiyi Yang, Dongbo Bu |
Accurate and efficient protein sequence design through learning concise local environment of residues. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hanqing Zhao, Matthijs Leon Souilljee, Pavlos Pavlidis, Nikolaos Alachiotis 0001 |
Genome-wide scans for selective sweeps using convolutional neural networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fernando Zhapa-Camacho, Maxat Kulmanov, Robert Hoehndorf |
mOWL: Python library for machine learning with biomedical ontologies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: FASTRAL: improving scalability of phylogenomic analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kaspar Märtens, Michele Bortolomeazzi, Lucia Montorsi, Jo Spencer, Francesca D. Ciccarelli, Christopher Yau |
Rarity: discovering rare cell populations from single-cell imaging data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Robin Paul, Jian Wang, Colleen Reilly, Edgar Sioson, Jaimin Patel, Gavriel Matt, Aleksandar Acic, Xin Zhou |
ppBAM: ProteinPaint BAM track for read alignment visualization and variant genotyping. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yuansong Zeng, Zhuoyi Wei, Qianmu Yuan, Sheng Chen, Weijiang Yu, Yutong Lu, Jianzhao Gao, Yuedong Yang |
Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Andrea Mastropietro, Gianluca De Carlo, Aris Anagnostopoulos |
XGDAG: explainable gene-disease associations via graph neural networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jacob Morrison, Wanding Zhou, Benjamin K. Johnson, Hui Shen |
Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jianmei Zhao, Fengcui Qian, Xuecang Li, Zhengmin Yu, Jiang Zhu, Rui Yu, Yue Zhao, Ke Ding, Yanyu Li, Yongsan Yang, Qi Pan, Jiaxin Chen, Chao Song, Qiuyu Wang, Jian Zhang, Guohua Wang, Chunquan Li 0002 |
CanMethdb: a database for genome-wide DNA methylation annotation in cancers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Rudolf T. Pillich, Jing Chen, Christopher Churas, Dylan Fong, Benjamin M. Gyori, Trey Ideker, Klas Karis, Sophie N. Liu, Keiichiro Ono, Alexander R. Pico, Dexter Pratt |
NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño |
PATO: genome-wide prediction of lncRNA-DNA triple helices. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Abdul Rehman Khan, Marcel J. T. Reinders, Indu Khatri |
Determining epitope specificity of T-cell receptors with transformers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sergey Vilov, Matthias Heinig |
DeepSom: a CNN-based approach to somatic variant calling in WGS samples without a matched normal. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Eric S. Davis, Wancen Mu, Stuart Lee, Mikhail G. Dozmorov, Michael I. Love, Douglas H. Phanstiel |
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaojing Wu, Mingfei Han 0001, Xinyu Song 0002, Song He, Xiaochen Bo, Yunping Zhu |
COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhenhuan Feng, Peiyang Fang, Hui Zheng, Xiaofei Zhang |
DEP2: an upgraded comprehensive analysis toolkit for quantitative proteomics data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sehi Park, Mobeen Ur Rehman, Farman Ullah, Hilal Tayara, Kil To Chong 0001 |
iCpG-Pos: an accurate computational approach for identification of CpG sites using positional features on single-cell whole genome sequence data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yan Zhu, Yuhuan Zhou, Yang Liu 0039, Xuan Wang, Junyi Li |
SLGNN: synthetic lethality prediction in human cancers based on factor-aware knowledge graph neural network. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nelle Varoquaux, William S. Noble, Jean-Philippe Vert |
Inference of 3D genome architecture by modeling overdispersion of Hi-C data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Leopold Weidner, Daniel Hemmler, Michael Rychlik, Philippe Schmitt-Kopplin |
DBDIpy: a Python library for processing of untargeted datasets from real-time plasma ionization mass spectrometry. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jin Xu, Jessie Jiang, Herbert M. Sauro |
SBMLDiagrams: a python package to process and visualize SBML layout and render. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Daoyi Huang, Jianping Jiang, Tingting Zhao, Shengnan Wu, Pin Li, Yongfen Lyu, Jincai Feng, Mingyue Wei, Zhixing Zhu, Jianlei Gu, Yongyong Ren, Guangjun Yu, Hui Lu 0004 |
diseaseGPS: auxiliary diagnostic system for genetic disorders based on genotype and phenotype. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Van-Giang Trinh, Belaid Benhamou, Thomas A. Henzinger, Samuel Pastva |
Trap spaces of multi-valued networks: definition, computation, and applications. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Joint registration of multiple point clouds for fast particle fusion in localization microscopy. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kristiina Ausmees, Carl Nettelblad |
Achieving improved accuracy for imputation of ancient DNA. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sudeep Sahadevan, Thileepan Sekaran, Nadia Ashaf, Marko Fritz, Matthias W. Hentze, Wolfgang Huber, Thomas Schwarzl |
htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anjali Silva, Xiaoke Qin, Steven J. Rothstein, Paul D. McNicholas, Sanjeena Subedi |
Finite mixtures of matrix variate Poisson-log normal distributions for three-way count data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Emmi Jokinen, Alexandru Dumitrescu, Jani Huuhtanen, Vladimir Gligorijevic, Satu Mustjoki, Richard Bonneau, Markus Heinonen, Harri Lähdesmäki |
TCRconv: predicting recognition between T cell receptors and epitopes using contextualized motifs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anton Zhiyanov, Narek Engibaryan, Stepan A. Nersisyan, Maxim U. Shkurnikov, Alexander G. Tonevitsky |
Differential co-expression network analysis with DCoNA reveals isomiR targeting aberrations in prostate cancer. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jialun Wu, Yuxin Dong, Zeyu Gao 0001, Tieliang Gong, Chen Li 0011 |
Dual Attention and Patient Similarity Network for drug recommendation. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiang Li, Qian Shi, Ke Chen, Mingfu Shao |
Seeding with minimized subsequence. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yi Fang, Xiaoyong Pan, Hong-Bin Shen |
De novodrug design by iterative multiobjective deep reinforcement learning with graph-based molecular quality assessment. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ziqiao Zhang, Ailin Xie, Jihong Guan, Shuigeng Zhou |
Molecular property prediction by semantic-invariant contrastive learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Saleh Riahi, Jae Hyeon Lee, Taylor Sorenson, Shuai Wei, Sven Jager, Reza Olfati-Saber, Yanfeng Zhou, Anna Park, Maria Wendt, Hervé Minoux, Yu Qiu |
Surface ID: a geometry-aware system for protein molecular surface comparison. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yi Liu 0058, Benjamin L. Elsworth, Tom R. Gaunt |
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | João Paulo Pereira Zanetti, Lucas Peres Oliveira, Leonid Chindelevitch, João Meidanis |
Generalizations of the genomic rank distance to indels. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Marine Jeanmougin, Hans Petter Brodal, Heidi Dietrichson Pharo, Hege Marie Vedeld, Guro Elisabeth Lind |
PoDCall: positive droplet calling and normalization of droplet digital PCR DNA methylation data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel T. Rademaker, Kevin J. van Geemen, Li C. Xue |
GradPose: a very fast and memory-efficient gradient descent-based tool for superimposing millions of protein structures from computational simulations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Trevor Manz, Sehi L'Yi, Nils Gehlenborg |
Gos: a declarative library for interactive genomics visualization in Python. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Giovanni Visonà, Diane Duroux, Lucas Miranda, Emese Sükei, Yiran Li, Karsten M. Borgwardt, Carlos G. Oliver |
Multimodal learning in clinical proteomics: enhancing antimicrobial resistance prediction models with chemical information. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhili Qiao, Elle Barnes, Susannah Tringe, Daniel P. Schachtman, Peng Liu 0007 |
Poisson hurdle model-based method for clustering microbiome features. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hui Yu, Limin Jiang, Chung-I Li, Scott Ness, Sara G. M. Piccirillo, Yan Guo |
Somatic mutation effects diffused over microRNA dysregulation. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yiwei Liu, Changhuo Yang, Hong-Dong Li, Jianxin Wang 0001 |
IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xinyi Yu, Jiashun Xiao, Mingxuan Cai, Yuling Jiao, Xiang Wan, Jin Liu 0011, Can Yang 0002 |
PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mingzhi Yuan, Ao Shen, Kexue Fu, Jiaming Guan, Yingfan Ma, Qin Qiao, Manning Wang |
ProteinMAE: masked autoencoder for protein surface self-supervised learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Elisabetta C. Sciacca, Salvatore Alaimo, Gianmarco Silluzio, Alfredo Ferro, Vito Latora, Costantino Pitzalis, Alfredo Pulvirenti, Myles J. Lewis |
DEGGs: an R package with shiny app for the identification of differentially expressed gene-gene interactions in high-throughput sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kyriakos Soulios, Patrick Scheibe, Matthias Bernt, Jörg Hackermüller, Jana Schor |
deepFPlearn +: enhancing toxicity prediction across the chemical universe using graph neural networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Brendan S. McConnell, Matthew W. Parker |
Protein intrinsically disordered regions have a non-random, modular architecture. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nathan Edwards, Christian Dillard, N. M. Prashant, Liu Hongyu, Mia Yang, Evgenia Ulianova, Anelia Horvath |
SCExecute: custom cell barcode-stratified analyses of scRNA-seq data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaobin Zheng, Joseph R. Tran, Yixian Zheng |
CscoreTool-M infers 3D sub-compartment probabilities within cell population. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yanlei Kang, Arne Elofsson, Yunliang Jiang, Weihong Huang, Minzhe Yu, Zhong Li |
AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tudor Groza, Honghan Wu, Marcel E. Dinger, Daniel Danis, Coleman Hilton, Anita Bagley, Jon R. Davids, Ling Luo 0001, Zhiyong Lu, Peter N. Robinson |
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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