Search results for "CSB"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Alireza Darvish, EunSang Bak, Krishna Gopalakrishnan, R. H. Zadeh, Kayvan Najarian	A New Hierarchical Method for Identification of Dynamic Regulatory Pathways from Time-Series DNA Microarray Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Qian Diao, Wei Hu 0002, Hao Zhong, Juntao Li, Feng Xue, Tao Wang 0003, Yimin Zhang 0002	Disease Gene Explorer: Display Disease Gene Dependency by Combining Bayesian Networks with Clustering.	CSB	2004	DBLP DOI BibTeX RDF
1	Stephen A. Racunas, Christopher Griffin 0001, Nigam Shah	A Finite Model Theory for Biological Hypotheses.	CSB	2004	DBLP DOI BibTeX RDF
1	John A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra	Comparative Analysis of Gene Expression and DNA Copy Number Data for Pancreatic and Breast Cancers Using an Orthogonal Decomposition.	CSB	2004	DBLP DOI BibTeX RDF
1	Hsiao Ping Lee, Tzu Fang Sheu, Yin-Te Tsai, Ching Hua Shih, Chuan Yi Tang	A Efficient Algorithm for Unique Signature Discovery on Whole-Genome EST Databases.	CSB	2004	DBLP DOI BibTeX RDF
1	Alon Kaufman, Martin Kupiec, Eytan Ruppin	Multi-Knockout Genetic Network Analysis: The Rad6 Example.	CSB	2004	DBLP DOI BibTeX RDF
1	Fang Liu, Tor-Kristian Jenssen, Vegard Nygaard, John Sack, Eivind Hovig	FigSearch: Using Maximum Entropy Classifier to Categorize Biological Figures.	CSB	2004	DBLP DOI BibTeX RDF
1	Yan Qi 0003, Jianbo Gao, Yinhe Cao, Wen-wen Tung	Deriving a Novel Codon Index by Combining Period-3 and Fractal Features of DNA Sequences.	CSB	2004	DBLP DOI BibTeX RDF
1	Wei Wang 0086, Gregory F. Cooper	An Bayesian Method for Biological Pathway Discovery from High-Throughput Experimental Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Zheng Yun, Kwoh Chee Keong 0001	Dynamic Algorithm for Inferring Qualitative Models of Gene Regulatory Networks.	CSB	2004	DBLP DOI BibTeX RDF
1	Chenyang Cui, Donghui Wang, Jiaoying Shi	Comparing 3D Protein Structures Similarity by Using Fractal Features.	CSB	2004	DBLP DOI BibTeX RDF
1	Maxim Shklar, Orit Shmueli, Liora Strichman-Almashanu, Michael Shmoish, Doron Lancet, Marilyn Safran	GeneTide: Terra Incognita Discovery Endeavor Mining ESTs and Expression Data to Elucidate Known and De-Novo GeneCards Genes.	CSB	2004	DBLP DOI BibTeX RDF
1	Zoé Lacroix, Vidyadhari Edupuganti	How Biological Source Capabilities May Affect the Data Collection Process.	CSB	2004	DBLP DOI BibTeX RDF
1	Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru	Space-Conserving Optimal DNA-Protein Alignment .	CSB	2004	DBLP DOI BibTeX RDF
1	Shiori Furihata, Toshikazu Ito, Naoyuki Kamatani	Association Tests and Estimation of Haplotype Frequencies and of Penetrance-Related Parameters in a Case-Control Study.	CSB	2004	DBLP DOI BibTeX RDF
1	Youlian Pan, Brandon Smith, Hung Fang, A. Fazel Famili, Marianna Sikorska, P. Roy Walker	Selection of Putative Cis-Regulatory Motifs through Regional and Global Conservation.	CSB	2004	DBLP DOI BibTeX RDF
1	Hyunsoo Kim, Haesun Park	Incremental and Decremental Least Squares Support Vector Machine and Its Application to Drug Design.	CSB	2004	DBLP DOI BibTeX RDF
1	Bill Martin, Robert M. Horton	A Java Program to Create Simulated Microarray Images.	CSB	2004	DBLP DOI BibTeX RDF
1	Michael Molla, Jude W. Shavlik, Thomas Albert 0001, Todd Richmond, Steven Smith	A Self-Tuning Method for One-Chip SNP Identification.	CSB	2004	DBLP DOI BibTeX RDF
1	Allison Griggs, Shuba Gopal	A Markov Model Based Gene Discrimination Approach in Trypanosomes.	CSB	2004	DBLP DOI BibTeX RDF
1	Kevin Crosby, Paula Gabbert	BioSPRINT: Classification of Intron and Exon Sequences Using the SPRINT Algorithm.	CSB	2004	DBLP DOI BibTeX RDF
1	Grace Steele, Vojislav Stojkovic	Agent-Oriented Approach to DNA Computing.	CSB	2004	DBLP DOI BibTeX RDF
1	Chang-Heng Chang, Li-Ching Hsieh, Ta-Yuan Chen, Hong-Da Chen, Liaofu Luo, Hoong-Chien Lee	Shannon Information in Complete Genomes.	CSB	2004	DBLP DOI BibTeX RDF
1	Zhenhua Guo, John W. Stiller	Comparative Genomics of Cyclin-Dependent Kinases Suggest Co-Evolution of the RNAP II C-Terminal Domain and CTD-Directed CDKs.	CSB	2004	DBLP DOI BibTeX RDF
1	Todd J. Taylor, Iosif I. Vaisman	A New Method of Secondary Structure Assignment Based on the Delaunay Tessellation of Protein Structures.	CSB	2004	DBLP DOI BibTeX RDF
1	Eugene Lin, Dennis Chen, Yuchi Hwang, Ashely Chang, Z. John Gu	A Prediction Model for the Drug Efficacy of Interferon in CHC Patients Based on SNPs.	CSB	2004	DBLP DOI BibTeX RDF
1	Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara	Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures.	CSB	2004	DBLP DOI BibTeX RDF
1	Stefano Lonardi, Yu Luo	Gridding and Compression of Microarray Images.	CSB	2004	DBLP DOI BibTeX RDF
1	Daniela Puiu	SUPERCONTIGS: A Contig Scaffolding Tool.	CSB	2004	DBLP DOI BibTeX RDF
1	Rahul Singh	Reasoning about Molecular Similarity and Properties.	CSB	2004	DBLP DOI BibTeX RDF
1	Lincong Wang, Bruce Randall Donald	Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar Couplings.	CSB	2004	DBLP DOI BibTeX RDF
1	Kreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger	Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein Crystallography.	CSB	2004	DBLP DOI BibTeX RDF
1	Hui Fang 0001, ChengXiang Zhai, Lei Liu, Jiong Yang	Subspace Clustering for Microarray Data Analysis: Multiple Criteria and Significance Assessment.	CSB	2004	DBLP DOI BibTeX RDF
1	Rui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina S. Leslie	Profile-Based String Kernels for Remote Homology Detection and Motif Extraction.	CSB	2004	DBLP DOI BibTeX RDF	protein motifs, support vector machine, kernels, protein classification
1	Yuan-Kai Wang, Cheng-Wei Huang	DNA Microarray Image Analysis Using Active Contour Model.	CSB	2004	DBLP DOI BibTeX RDF
1	Karen Sachs, Omar D. Perez, Dana Pe'er, Garry P. Nolan, David K. Gifford, Tommi S. Jaakkola, Douglas A. Lauffenburger	Analysis of Signaling Pathways in Human T-Cells Using Bayesian Network Modeling of Single Cell Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Zhaohui Sun, Jingyi Yang, Jitender S. Deogun	MISAE: A New Approach for Regulatory Motif Extraction.	CSB	2004	DBLP DOI BibTeX RDF
1	Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones	Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures.	CSB	2004	DBLP DOI BibTeX RDF
1	Assaf Avihoo, Nir Dromi, Danny Barash	Fine-Grain Matrix Graph Representation for Predicting Mutations Leading to Conformational Rearrangements in Small RNAs.	CSB	2004	DBLP DOI BibTeX RDF
1	PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu 0001	In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102.	CSB	2004	DBLP DOI BibTeX RDF
1	Oriel Bergig, Danny Barash, Klara Kedem	RNA Motif Search Using the Structure to String (STR2) Method.	CSB	2004	DBLP DOI BibTeX RDF
1	Jonathan J. Ward, Jaspreet Singh Sodhi, Bernard F. Buxton, David T. Jones	Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning Algorithms.	CSB	2004	DBLP DOI BibTeX RDF
1	Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F. Samatova	In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity.	CSB	2004	DBLP DOI BibTeX RDF
1	Krishna Gopalakrishnan, R. H. Zadeh, Kayvan Najarian, Alireza Darvish	Computational Analysis and Classification of p53 Mutants According to Primary Structure.	CSB	2004	DBLP DOI BibTeX RDF
1	Mark L. Farman, Joshua W. Gilkerson, Jerzy W. Jaromczyk, Chuck Staben	RepeatAssembler: A Package for Annotation of Full-Length Repetitive DNA Sequences in Fungal Genomes.	CSB	2004	DBLP DOI BibTeX RDF
1	Hamid Bolouri	From DNA Sequence to Network Behavior: Functional Properties of Genetic Regulatory Networks.	CSB	2004	DBLP DOI BibTeX RDF
1	Ron Shamir	Computational Dissection of Regulatory Networks Using Diverse High-Throughput Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Usman Roshan, Bernard M. E. Moret, Tandy J. Warnow, Tiffani L. Williams	Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees.	CSB	2004	DBLP DOI BibTeX RDF
1	Heidi J. Sofia, Abigail L. Corrigan, Kyle R. Klicker, George Chin Jr., Eric G. Stephan	Exploring Genomic Context Patterns for Rhodobacter Sphaeroides in the HERBE Knowledge Discovery Environment.	CSB	2004	DBLP DOI BibTeX RDF
1	Yizhou Xie, Xujing Wang	Analysis of Population Dynamics in Beta-Cell Destruction Lead to Identification of Novel Candidate Genes for Type 1 Diabetes.	CSB	2004	DBLP DOI BibTeX RDF
1	Jinze Liu, Jiong Yang 0001, Wei Wang 0010	Biclustering in Gene Expression Data by Tendency.	CSB	2004	DBLP DOI BibTeX RDF	Order Preserving, Gene expression data, Biclustering, Microarray data
1	Huiqing Liu, Jinyan Li 0001, Limsoon Wong	Selection of Patient Samples and Genes for Outcome Prediction.	CSB	2004	DBLP DOI BibTeX RDF
1	Sach Mukherjee, Stephen J. Roberts	Probabilistic Consistency Analysis for Gene Selection.	CSB	2004	DBLP DOI BibTeX RDF
1	Fang-Xiang Wu, Anthony J. Kusalik, Wen-Jun Zhang 0001	A. Genetic Algorithm for Inferring Time Delays in Gene Regulatory Networks.	CSB	2004	DBLP DOI BibTeX RDF
1	Yinhe Cao, Wen-wen Tung, Jianbo Gao	Recurrence Time Statistics: Versatile Tools for Genomic DNA Sequence Analysis.	CSB	2004	DBLP DOI BibTeX RDF
1	Lawrence D'Antonio, Paramjeet Singh Bagga	Computational Methods for Predicting Intramolecular G-Quadruplexes in Nucleotide Sequences.	CSB	2004	DBLP DOI BibTeX RDF
1	Olusola C. Idowu, Steven J. Lynden, Malcolm P. Young, Péter András 0001	Bacillus Subtilis Protein Interaction Network Analysis.	CSB	2004	DBLP DOI BibTeX RDF
1	Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, Stephen R. Holbrook	Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli.	CSB	2004	DBLP DOI BibTeX RDF
1	Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu 0001	Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation.	CSB	2004	DBLP DOI BibTeX RDF
1	Donald A. Adjeroh, Jianan Feng	Locating All Tandem Repeat Families in a Sequence.	CSB	2004	DBLP DOI BibTeX RDF
1	Christopher James Langmead, Bruce Randall Donald	High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment.	CSB	2004	DBLP DOI BibTeX RDF
1	Xiaolu Huang, Hesham H. Ali, Anguraj Sadanandam, Rakesh K. Singh	SRPVS: A New Motif Searching Algorithm for Protein Analysis.	CSB	2004	DBLP DOI BibTeX RDF
1	Stephan Heymann, Felix Naumann, Louiqa Raschid, Peter Rieger	Labeling and Enhancing Life Sciences Links.	CSB	2004	DBLP DOI BibTeX RDF
1	Barrett Abel, Martin Gollery	BPAP: A Computational Tool for Whole Genome Analysis and Annotation.	CSB	2004	DBLP DOI BibTeX RDF
1	Jung-Yup Kang, Sandeep Gupta 0001, Jean-Luc Gaudiot	Accelerating the Kernels of BLAST with an Efficient PIM (Processor-In-Memory) Architecture.	CSB	2004	DBLP DOI BibTeX RDF	Processor-In-Memory (PIM) Architecture, Sequence Alignment, BLAST
1	Zhuozhi Wang, Kaizhong Zhang	Multiple RNA Structure Alignment.	CSB	2004	DBLP DOI BibTeX RDF
1	Chris H. Q. Ding, Richard F. Meraz, Xiaofeng He, Stephen R. Holbrook	Contraction Graphs for Representation and Analysis of RNA Secondary Structure.	CSB	2004	DBLP DOI BibTeX RDF
1	Sandy Shaw, Paul Shapshak	Fractal Genomics Modeling: A New Approach to Genomic Analysis and Biomarker Discovery.	CSB	2004	DBLP DOI BibTeX RDF	network theory, HIV infection, bioinformatics, fractals, gene expression, brain, scale-free
1	Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu 0001	CUBIC: Search for Binding Sites.	CSB	2004	DBLP DOI BibTeX RDF
1	Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu 0001	A Knowledge Base for Computational Pathway Reconstruction.	CSB	2004	DBLP DOI BibTeX RDF
1	Ian Shadforth, Daniel Crowther, Conrad Bessant	Search-Space Reduction of a Non-Redundant Peptide Database.	CSB	2004	DBLP DOI BibTeX RDF
1	Ryo Yoshida, Tomoyuki Higuchi, Seiya Imoto	A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Lie-Quan Lee, Jeff Varner, Kwok Ko	Parallel Extreme Pathway Computation for Metabolic Networks.	CSB	2004	DBLP DOI BibTeX RDF
1	Xiao Yang	Qvalue Method May Not Always Control False Discovery Rate in Genomics Applications.	CSB	2004	DBLP DOI BibTeX RDF
1	Robert M. Day, Andrey Borziak, Andrey Gorin	PPM-Chain De novo Peptide Identification Program Comparable in Performance to Sequest.	CSB	2004	DBLP DOI BibTeX RDF
1	Jim Kent	Spaghetti Code, Soupy Logic, and the Expression of Genes.	CSB	2004	DBLP DOI BibTeX RDF
1	Kirt M. Noël, Kay C. Wiese	Exploring the Use of Stem-Loop Characteristics for Pinpointing Structural RNA Genes.	CSB	2004	DBLP DOI BibTeX RDF
1	Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang	An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes.	CSB	2004	DBLP DOI BibTeX RDF	RNA structure similarity, homologous structural RNA search, pattern recognition
1	Jean-Loup Faulon, Shawn Martin, Robert D. Carr	Dynamical Robustness in Gene Regulatory Networks.	CSB	2004	DBLP DOI BibTeX RDF
1	Jianbo Gao, Jesse S. A. Bridgewater, Vwani P. Roychowdhury	Synchronized Oscillations and Chaos in Coupled Genetic Repressilators.	CSB	2004	DBLP DOI BibTeX RDF
1	Catalin C. Barbacioru, Daniel J. Cowden, Joel H. Saltz	An Algorithm for Reconstruction of Markov Blankets in Bayesian Networks of Gene Expression Datasets.	CSB	2004	DBLP DOI BibTeX RDF
1	Hiroshi Mamitsuka, Yasushi Okuno	A Hierarchical Mixture of Markov Models for Finding Biologically Active Metabolic Paths Using Gene Expression and Protein Classes.	CSB	2004	DBLP DOI BibTeX RDF
1	Christopher Maher, Marja Timmermans, Lincoln Stein, Doreen Ware	Identifying MicroRNAs in Plant Genomes.	CSB	2004	DBLP DOI BibTeX RDF
1	Sheng Zhong, Lu Tian, Cheng Li, Kai-Florian Storch, Wing Hung Wong	Comparative Analysis of Gene Sets in the Gene Ontology Space under the Multiple Hypothesis Testing Framework.	CSB	2004	DBLP DOI BibTeX RDF	False Discovery Rate, Q-value, GoSurfer, Data Mining, Visualization, Microarray, Gene Ontology
1	Zoé Lacroix, Kaushal Parekh, Louiqa Raschid, Maria-Esther Vidal	Navigating through the Biological Maze.	CSB	2004	DBLP DOI BibTeX RDF
1	Danny Barash, Dorin Comaniciu	Meanshift Clustering for DNA Microarray Analysis.	CSB	2004	DBLP DOI BibTeX RDF
1	Jun-tao Guo, Ying Xu 0001	Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain.	CSB	2004	DBLP DOI BibTeX RDF
1	Xiequn Xu, William Bradley Barbazuk, Yucheng Feng, Karel Schubert, Agnes P. Chan, Geo Pertea, Li Zheng, Foo Cheung, Yuandan Lee	Gene Recovery of Two Genome-Filtration Sequencing Techniques When Applied to the Maize Genome.	CSB	2004	DBLP DOI BibTeX RDF
1	Patrik D'haeseleer, George M. Church	Estimating and Improving Protein Interaction Error Rates.	CSB	2004	DBLP DOI BibTeX RDF
1	Zoé Lacroix, Kaushal Parekh, Hasan Davulcu, I. V. Ramakrishnan, Nikeeta Julasana	Automating the Biological Data Collection Process with Agents.	CSB	2004	DBLP DOI BibTeX RDF
1	Huimin Geng, Dhundy Bastola, Hesham H. Ali	A New Approach to Clustering Biological Data Using Message Passing.	CSB	2004	DBLP DOI BibTeX RDF
1	Jinze Liu, Wei Wang 0010, Jiong Yang 0001	Gene Ontology Friendly Biclustering of Expression Profiles.	CSB	2004	DBLP DOI BibTeX RDF	Tendency Preserving, Gene Ontology, Biclustering, Gene expression profiles
1	Ravi Vijaya Satya, Amar Mukherjee	PRUNER: Algorithms for Finding Monad Patterns in DNA Sequences.	CSB	2004	DBLP DOI BibTeX RDF	regulatory patterns, k-mismatch patterns, Pattern discovery
1	Haili Jiao, Peixin Yang, Zhengxin Chen	Mining Estrogen Microarray Data: An Approach Using Contrast Data Analysis.	CSB	2004	DBLP DOI BibTeX RDF
1	Hyunsoo Kim, Gene H. Golub, Haesun Park	Imputation of Missing Values in DNA Microarray Gene Expression Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Raf M. Podowski, John G. Cleary, Nicholas T. Goncharoff, Gregory Amoutzias, William S. Hayes	AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names.	CSB	2004	DBLP DOI BibTeX RDF
1	Yizhou Xie, Soumitra Ghosh, Parthav Jailwalia, Xujing Wang	The Dynamic Range of Gene Expressions Depend on Their Ontology.	CSB	2004	DBLP DOI BibTeX RDF
1	Shawn Martin, George Davidson, Elebeoba E. May, Jean-Loup Faulon, Margaret Werner-Washburne	Inferring Genetic Networks from Microarray Data.	CSB	2004	DBLP DOI BibTeX RDF
1	Nini Rao, Simon J. Shepherd	Extracting Characteristic Patterns from Genome - Wide Expression Data by Non-Negative Matrix Factorization.	CSB	2004	DBLP DOI BibTeX RDF
1	Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu 0001	Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes.	CSB	2004	DBLP DOI BibTeX RDF

Publications at "CSB"( http://dblp.L3S.de/Venues/CSB )