Search results for "DNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
66	Dage Liu, John H. Reif, Thomas H. LaBean	DNA Nanotubes: Construction and Characterization of Filaments Composed of TX-tile Lattice.	DNA	2002	DBLP DOI BibTeX RDF
66	Byoung-Tak Zhang, Ha-Young Jang	A Bayesian Algorithm for In Vitro Molecular Evolution of Pattern Classifiers.	DNA	2004	DBLP DOI BibTeX RDF
66	David Spetzler, Fusheng Xiong, Wayne D. Frasch	Heuristic Solution to a 10-City Asymmetric Traveling Salesman Problem Using Probabilistic DNA Computing.	DNA	2007	DBLP DOI BibTeX RDF	Ligation, Denaturing PAGE, Magnetic affinity, Traveling Salesman Problem, Hybridization, DNA computing
66	Koutaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata	Stepwise Assembly of DNA Tile on Surfaces.	DNA	2007	DBLP DOI BibTeX RDF	DNA tile, stepwise assembly, microfluidic device, self-assembly
66	Suguru Kawashimo, Hirotaka Ono 0001, Kunihiko Sadakane, Masafumi Yamashita	DNA Sequence Design by Dynamic Neighborhood Searches.	DNA	2006	DBLP DOI BibTeX RDF	Combinatorial Constraints, Variable Depth Search, Local Search, Variable Neighborhood Search, DNA Sequence Design
66	Giuditta Franco, Vincenzo Manca, Cinzia Giagulli, Carlo Laudanna	DNA Recombination by XPCR.	DNA	2005	DBLP DOI BibTeX RDF	XPCR, generation of DNA initial pool, SAT, PCR
66	Danny van Noort	A Poor Man's Microfluidic DNA Computer.	DNA	2005	DBLP DOI BibTeX RDF	DNA hybridisation and denaturing, finemachining, Perspex®, Delrin®, automation, microfluidics
66	Satoshi Kobayashi	Testing Structure Freeness of Regular Sets of Biomolecular Sequences.	DNA	2004	DBLP DOI BibTeX RDF	DNA Computing, Molecular Computing, Secondary Structures, Sequence Design
64	Xiaolong Shi, Xin Li, Zheng Zhang, Jin Xu	Improve Capability of DNA Automaton: DNA Automaton with Three Internal States and Tape Head Move in Two Directions.	ICIC (2)	2005	DBLP DOI BibTeX RDF
64	Jennifer A. Sager, Darko Stefanovic	Designing Nucleotide Sequences for Computation: A Survey of Constraints.	DNA	2005	DBLP DOI BibTeX RDF
64	Urmi Majumder, Thomas H. LaBean, John H. Reif	Activatable Tiles: Compact, Robust Programmable Assembly and Other Applications.	DNA	2007	DBLP DOI BibTeX RDF	DNA-assembly, error-correction, molecular computation
63	David Soloveichik, Georg Seelig, Erik Winfree	DNA as a Universal Substrate for Chemical Kinetics.	DNA	2008	DBLP DOI BibTeX RDF
63	Peter Leupold	Partial Words for DNA Coding.	DNA	2004	DBLP DOI BibTeX RDF
63	Naoto Takahashi, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi	Aqueous Computing with DNA Hairpin-Based RAM.	DNA	2004	DBLP DOI BibTeX RDF
62	Hajime Kitakami, Tadasu Shin-I, Kazuho Ikeo, Yoshihiro Ugawa, Naruya Saitou, Takashi Gojobori, Yoshio Tateno	YAMATO and ASUKA: DNA database management system.	HICSS (5)	1995	DBLP DOI BibTeX RDF	DNA database management system, YAMATO, ASUKA, DDBJ, window interfaces, DDBJ-schema, single entry, Human Genome Project, flat file format, restructuring tool, tree search tool, taxonomy database, structured SQL-programming method, control flow language, SQL expression, SYBASE, DNA Data Bank of Japan, user interfaces, searching, query processing, relational databases, SQL, DNA, tree data structures, genetics, biology computing, relational database management system, relational schema
62	So Young Yoo, Tae-im Kim, Sang Yup Lee, Eng Kweon Kim, Ki Chang Keum, Nae Choon Yoo, Won Min Yoo	A Simple DNA Chip for Diagnosis of Most Common Corneal Dystrophies Caused by βigh3 Gene Mutations.	FBIT	2007	DBLP DOI BibTeX RDF
62	Dang Hung Tran, Tho Hoan Pham, Kenji Satou, Tu Bao Ho	Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences.	EvoWorkshops	2006	DBLP DOI BibTeX RDF	Histone proteins, acetylation, conditional random fields, methylation
62	Fang-Xiang Wu, Wen-Jun Zhang 0001, Anthony J. Kusalik	An Algorithm to Reconstruct a Target DNA Sequence from Its Spectrum Connected at a Given Level.	BIBE	2003	DBLP DOI BibTeX RDF
62	Ravinderjit S. Braich, Cliff Johnson, Paul W. K. Rothemund, Darryl Hwang, Nickolas V. Chelyapov, Leonard M. Adleman	Solution of a Satisfiability Problem on a Gel-Based DNA Computer.	DNA Computing	2000	DBLP DOI BibTeX RDF
62	Erik Winfree, Tony Eng, Grzegorz Rozenberg	String Tile Models for DNA Computing by Self-Assembly.	DNA Computing	2000	DBLP DOI BibTeX RDF
61	Michael Domaratzki	Hairpin Structures Defined by DNA Trajectories.	Theory Comput. Syst.	2009	DBLP DOI BibTeX RDF	Hairpins, DNA trajectories, DNA words, Formal languages
61	Guangzhao Cui, Cuiling Li, Xuncai Zhang, Yanfeng Wang, Xinbo Qi, Xiaoguang Li, Haobin Li	Application of DNA Computing by Self-assembly on 0-1 Knapsack Problem.	ISNN (3)	2009	DBLP DOI BibTeX RDF	DNA tile, DNA computing, Knapsack problem, Self-assembly
61	Masahito Yamamoto, Satoshi Kashiwamura, Azuma Ohuchi, Masashi Furukawa	Large-scale DNA memory based on the nested PCR.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	DNA memory, Nested PCR, Theoretical capacity, DNA Computing
61	Intaek Kim, HeSong Lian, Hwan Il Kang	A DNA Coding Scheme for Searching Stable Solutions.	International Conference on Computational Science (1)	2005	DBLP DOI BibTeX RDF	DNA coding, gradient DNA coding, genetic algorithms
61	Andres Figueroa, James Borneman, Tao Jiang 0001	Clustering Binary Fingerprint Vectors with Missing Values for DNA Array Data Analysis.	CSB	2003	DBLP DOI BibTeX RDF	oligonucleotide fingerprinting, DNA clone classification, DNA array, algorithm, cluster analysis
60	Clifford R. Johnson	Modeling Non-specific Binding in Gel-Based DNA Computers.	DNA	2007	DBLP DOI BibTeX RDF
60	Hiroyuki Sekiguchi, Ken Komiya, Daisuke Kiga, Masayuki Yamamura	A Realization of DNA Molecular Machine That Walks Autonomously by Using a Restriction Enzyme.	DNA	2007	DBLP DOI BibTeX RDF
60	Naoki Iimura, Masahito Yamamoto, Fumiaki Tanaka, Azuma Ohuchi	Sequence Design Support System for 4 × 4 DNA Tiles.	DNA	2007	DBLP DOI BibTeX RDF
60	Naoki Iimura, Masahito Yamamoto, Fumiaki Tanaka, Atsushi Kameda, Azuma Ohuchi	Sequence Design for Stable DNA Tiles.	DNA	2006	DBLP DOI BibTeX RDF
60	Koutaro Somei, Shohei Kaneda, Teruo Fujii, Satoshi Murata	A Microfluidic Device for DNA Tile Self-assembly.	DNA	2005	DBLP DOI BibTeX RDF
60	Keiichiro Takahashi, Satsuki Yaegashi, Atsushi Kameda, Masami Hagiya	Chain Reaction Systems Based on Loop Dissociation of DNA.	DNA	2005	DBLP DOI BibTeX RDF
60	Lila Kari, Stavros Konstantinidis, Elena Losseva, Petr Sosík, Gabriel Thierrin	Hairpin Structures in DNA Words.	DNA	2005	DBLP DOI BibTeX RDF
60	Hiroki Uejima, Masami Hagiya	Secondary Structure Design of Multi-state DNA Machines Based on Sequential Structure Transitions.	DNA	2003	DBLP DOI BibTeX RDF
60	Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi	Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loo.	DNA	2003	DBLP DOI BibTeX RDF
60	Hee-Woong Lim, Ji-Eun Yun, Hae-Man Jang, Young-Gyu Chai, Suk-In Yoo, Byoung-Tak Zhang	Version Space Learning with DNA Molecules.	DNA	2002	DBLP DOI BibTeX RDF
60	Ji Youn Lee, Soo-Yong Shin, Sirk June Augh, Tai Hyun Park, Byoung-Tak Zhang	Temperature Gradient-Based DNA Computing for Graph Problems with Weighted Edges.	DNA	2002	DBLP DOI BibTeX RDF
60	Fumiaki Tanaka, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi	Developing Support System for Sequence Design in DNA Computing.	DNA	2001	DBLP DOI BibTeX RDF
60	Salah Hussini, Lila Kari, Stavros Konstantinidis	Coding Properties of DNA Languages.	DNA	2001	DBLP DOI BibTeX RDF
60	Satoshi Kashiwamura, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi	Towards Optimization of PCR Protocol in DNA Computing.	DNA	2001	DBLP DOI BibTeX RDF
60	Danny van Noort, Frank-Ulrich Gast, John S. McCaskill	DNA Computing in Microreactors.	DNA	2001	DBLP DOI BibTeX RDF
60	John H. Reif, Urmi Majumder	Isothermal Reactivating Whiplash PCR for Locally Programmable Molecular Computation.	DNA	2008	DBLP DOI BibTeX RDF
60	Carmen Graciani Díaz, Mario J. Pérez-Jiménez	Using Automated Reasoning Systems on Molecular Computing.	DNA	2004	DBLP DOI BibTeX RDF
60	Suguru Kawashimo, Hirotaka Ono 0001, Kunihiko Sadakane, Masafumi Yamashita	Dynamic Neighborhood Searches for Thermodynamically Designing DNA Sequence.	DNA	2007	DBLP DOI BibTeX RDF	DNA Sequence Design Algorithm, Statistical Thermodynamical Constraints, Local Search
59	John A. Rose, Russell J. Deaton	The Fidelity of Annealing-Ligation: A Theoretical Analysis.	DNA Computing	2000	DBLP DOI BibTeX RDF
59	Zhixiang Yin, Jin Yang, Jianzhong Cui, Jiaxiu Zhang	Evolutionary Model for Sequence Generation.	ICIC (1)	2007	DBLP DOI BibTeX RDF	DNA Sequence Generation System, DNA coding method, DNA computing, Hamiltonian path problem, Evolution model
58	Lila Kari, Kalpana Mahalingam	Watson-Crick Conjugate and Commutative Words.	DNA	2007	DBLP DOI BibTeX RDF
58	John H. Reif, Sudheer Sahu	Autonomous Programmable Nanorobotic Devices Using DNAzymes.	DNA	2007	DBLP DOI BibTeX RDF
58	Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi, Satsuki Yaegashi, Masami Hagiya	Unravel Four Hairpins!	DNA	2006	DBLP DOI BibTeX RDF
58	Nao Nitta, Akira Suyama	Autonomous Biomolecular Computer Modeled after Retroviral Replication.	DNA	2003	DBLP DOI BibTeX RDF
58	Natasa Jonoska, Masahico Saito	Boundary Components of Thickened Graphs.	DNA	2001	DBLP DOI BibTeX RDF
57	Chris Luhrs	Polyomino-Safe DNA Self-assembly via Block Replacement.	DNA	2008	DBLP DOI BibTeX RDF
57	Lulu Qian, Erik Winfree	A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits.	DNA	2008	DBLP DOI BibTeX RDF
57	John H. Reif, Sudheer Sahu, Peng Yin 0003	Compact Error-Resilient Computational DNA Tiling Assemblies.	DNA	2004	DBLP DOI BibTeX RDF
57	Junghuei Chen, Russell J. Deaton, Max H. Garzon, Jin Woo Kim, David Harlan Wood, Hong Bi, Dylan Carpenter, Yu-Zhen Wang	Characterization of Non-crosshybridizing DNA Oligonucleotides Manufactured In Vitro.	DNA	2004	DBLP DOI BibTeX RDF
56	Aili Han	DNA Computing Model for the 0/1 Knapsack Problem.	HIS	2006	DBLP DOI BibTeX RDF
56	Boris Shimanovsky, Jessica Feng, Miodrag Potkonjak	Hiding Data in DNA.	Information Hiding	2002	DBLP DOI BibTeX RDF
56	Laxmi Parida, Dan Geiger	Mass Estimation of DNA Molecules and Extraction of Ordered Restriction Maps in Optical Mapping Imagery.	Algorithmica	1999	DBLP DOI BibTeX RDF	Flip cut, Optical mapping, Shortest path algorithm
56	Elizabeth Goode, David Harlan Wood, Junghuei Chen	DNA Implementation of a Royal Road Fitness Evaluation.	DNA Computing	2000	DBLP DOI BibTeX RDF
56	Paola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza	DNA and Circular Splicing.	DNA Computing	2000	DBLP DOI BibTeX RDF
56	Andrés de la Peña, Francisco J. Cisneros, Ángel Goñi Moreno, Juan Castellanos	DNA Electrophoresis Simulation.	IWANN (2)	2009	DBLP DOI BibTeX RDF	Electrophoresis, Simulation, Software, DNA Computing
56	Noor Khafifah Khalid, Zuwairie Ibrahim, Tri Basuki Kurniawan, Marzuki Khalid, Andries P. Engelbrecht	Implementation of Binary Particle Swarm Optimization for DNA Sequence Design.	IWANN (2)	2009	DBLP DOI BibTeX RDF	optimization, binary particle swarm optimization, DNA sequence design
56	Minsoo Lee, Yoonkyoung Lee, Boyeon Meang, Okju Choi	A clustering algorithm using particle swarm optimization for DNA chip data analysis.	ICUIMC	2009	DBLP DOI BibTeX RDF	DNA chip, clustering, particle swarm optimization
56	Luca Sterpone, Massimo Violante	A new hardware architecture for performing the gridding of DNA microarray images.	ACM Great Lakes Symposium on VLSI	2007	DBLP DOI BibTeX RDF	image data-processing, FPGA, edge detection, DNA microarray
56	Junghuei Chen, Russell J. Deaton, Yu-Zhen Wang	A DNA-based memory with in vitro learning and associative recall.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	learning, associative memory, DNA computing, biotechnology
56	Christiaan V. Henkel, Reno S. Bladergroen, Crina I. A. Balog, André M. Deelder, Tom Head, Grzegorz Rozenberg, Herman P. Spaink	Protein output for DNA computing.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	plasmid computing, DNA computing, proteomics
56	Bernard Yurke, Allen P. Mills Jr.	Using DNA to Power Nanostructures.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	molecular motors, DNA nanostructures, toeholds, strand exchange, reaction kinetics
56	Yukio Itakura, Masaki Hashiyada, Toshio Nagashima, Shigeo Tsujii	Proposal on personal identifiers generated from the STR information of DNA.	Int. J. Inf. Sec.	2002	DBLP DOI BibTeX RDF	DNA personal ID, STR count, Matching probability, Correlation between loci, Biometric personal authentication
55	Udo Feldkamp, Hilmar Rauhe, Wolfgang Banzhaf	Software Tools for DNA Sequence Design.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	molecular self-assembly, specific hybridization, DNA computing, DNA nanotechnology, sequence design
55	Arkadii G. D'yachkov, Péter L. Erdös, Anthony J. Macula, Vyacheslav V. Rykov, David C. Torney, Chang-Shung Tung, Pavel A. Vilenkin, P. Scott White	Exordium for DNA Codes.	J. Comb. Optim.	2003	DBLP DOI BibTeX RDF	binding propensity, digital velcro, directed design, DNA computing, DNA hybridization, formulation
55	Rudi Pendavingh, Petra Schuurman, Gerhard J. Woeginger	De Bruijn Graphs and DNA Graphs.	WG	2001	DBLP DOI BibTeX RDF	De Bruijn graph, DNA graphs, computational complexity, graph theory, NP-hardness, DNA computing, recognition algorithm
55	Satoshi Murata, Milan N. Stojanovic	DNA-based Nanosystems.	New Gener. Comput.	2008	DBLP DOI BibTeX RDF	Algorithmic Self-assembly, DNA Logic Gates, DNA Robotics, DNA Nanotechnology
55	Luca Benini, Carlotta Guiducci, Christian Paulus	Electronic Detection of DNA Hybridization: Toward CMOS Microarrays.	IEEE Des. Test Comput.	2007	DBLP DOI BibTeX RDF	CMOS microarrays, label-based DNA chip, label-free DNA chip, DNA hybridization
55	Max H. Garzon, Derrel Blain, Kiranchand V. Bobba, Andrew Neel, Michael West	Self-Assembly of DNA-like Structures In Silico.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	online genetic algorithms, DNA-based associative memories, efficiency of DNA computing, reaction kinetics in DNA-based computational protocols, Hamiltonian path problem
54	Georg Seelig, David Soloveichik	Time-Complexity of Multilayered DNA Strand Displacement Circuits.	DNA	2009	DBLP DOI BibTeX RDF
54	Luca Cardelli	Strand Algebras for DNA Computing.	DNA	2009	DBLP DOI BibTeX RDF
54	Ashish Goel, Morteza Ibrahimi	Renewable, Time-Responsive DNA Logic Gates for Scalable Digital Circuits.	DNA	2009	DBLP DOI BibTeX RDF
54	Bo Cui, Stavros Konstantinidis	DNA Coding Using the Subword Closure Operation.	DNA	2007	DBLP DOI BibTeX RDF
54	Angela M. Pagano, Susannah Gal	An Approach for Using Modified Nucleotides in Aqueous DNA Computing.	DNA	2007	DBLP DOI BibTeX RDF
54	Zuwairie Ibrahim, John A. Rose, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	A New Readout Approach in DNA Computing Based on Real-Time PCR with TaqMan Probes.	DNA	2006	DBLP DOI BibTeX RDF
54	Don Jyh-Fu Jeng, Junzo Watada, Berlin Wu, Jui-Yu Wu	Fuzzy Forecasting with DNA Computing.	DNA	2006	DBLP DOI BibTeX RDF
54	Ken Komiya, Satsuki Yaegashi, Masami Hagiya, Akira Suyama, John A. Rose	Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation.	DNA	2006	DBLP DOI BibTeX RDF
54	Tsutomu Takeda, Hirotaka Ono 0001, Kunihiko Sadakane, Masafumi Yamashita	A Local Search Based Barrier Height Estimation Algorithm for DNA Molecular Transitions.	DNA	2005	DBLP DOI BibTeX RDF
54	Keiichiro Takahashi, Satsuki Yaegashi, Hiroyuki Asanuma, Masami Hagiya	Photo- and Thermoregulation of DNA Nanomachines.	DNA	2005	DBLP DOI BibTeX RDF
54	Danny van Noort, Laura F. Landweber	Towards a Re-programmable DNA Computer.	DNA	2003	DBLP DOI BibTeX RDF
54	Atsushi Kameda, Masahito Yamamoto, Hiroki Uejima, Masami Hagiya, Kensaku Sakamoto, Azuma Ohuchi	Conformational Addressing Using the Hairpin Structure of Single-Strand DNA.	DNA	2003	DBLP DOI BibTeX RDF
54	Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Toshikazu Shiba, Azuma Ohuchi	Hierarchical DNA Memory Based on Nested PCR.	DNA	2002	DBLP DOI BibTeX RDF
54	Mirela Andronescu, Danielle Dees, Laura Slaybaugh, Yinglei Zhao, Anne Condon, Barry Cohen, Steven Skiena	Algorithms for Testing That Sets of DNA Words Concatenate without Secondary Structure.	DNA	2002	DBLP DOI BibTeX RDF
54	In-Hee Lee, Ji-Yoon Park, Hae-Man Jang, Young-Gyu Chai, Byoung-Tak Zhang	DNA Implementation of Theorem Proving with Resolution Refutation in Propositional Logic.	DNA	2002	DBLP DOI BibTeX RDF
54	Rana Barua, Janardan Misra	Binary Arithmetic for DNA Computers.	DNA	2002	DBLP DOI BibTeX RDF
54	Hubert Hug, Rainer Schuler	DNA-based Parallel Computation of Simple Arithmetic.	DNA	2001	DBLP DOI BibTeX RDF
54	Friedrich C. Simmel, Bernard Yurke	Operation of a Purified DNA Nanoactuator.	DNA	2001	DBLP DOI BibTeX RDF
54	James C. Mitchell, Bernard Yurke	DNA Scissors.	DNA	2001	DBLP DOI BibTeX RDF
54	Vincenzo Manca, Claudio Zandron	A Clause String DNA Algorithm for SAT.	DNA	2001	DBLP DOI BibTeX RDF
54	Thomas Hinze, Uwe Hatnik, Monika Sturm 0002	An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and Its Experimental Verification.	DNA	2001	DBLP DOI BibTeX RDF
54	Ken Komiya, Masayuki Yamamura, John A. Rose	Experimental Validation of Signal Dependent Operation in Whiplash PCR.	DNA	2008	DBLP DOI BibTeX RDF
54	Lila Kari, Stavros Konstantinidis, Petr Sosík	Bond-Free Languages: Formalizations, Maximality and Construction Methods.	DNA	2004	DBLP DOI BibTeX RDF
54	Danny van Noort	A Programmable Molecular Computer in Microreactors.	DNA	2004	DBLP DOI BibTeX RDF
54	Rebecca Schulman, Erik Winfree	Programmable Control of Nucleation for Algorithmic Self-assembly.	DNA	2004	DBLP DOI BibTeX RDF
54	Ho-Lin Chen, Ashish Goel	Error Free Self-assembly Using Error Prone Tiles.	DNA	2004	DBLP DOI BibTeX RDF
54	Samir M. Iqbal, Rashid Bashir	Nanoelectronic-Based Detection for Biology and Medicine.	Handbook of Automation	2009	DBLP DOI BibTeX RDF