Search results for "Homology"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
28	Hugh E. Williams, Justin Zobel	Indexing and Retrieval for Genomic Databases.	IEEE Trans. Knowl. Data Eng.	2002	DBLP DOI BibTeX RDF	genomic and scientific databases, indexing, homology search, local alignment
28	Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park	PDB_ISL: an intermediate sequence library for protein structure assignment.	RECOMB	2000	DBLP DOI BibTeX RDF	PDB_ISL, PSI-BLAST, structure assignment, homology
28	André Guéziec, Robert A. Hummel	Exploiting Triangulated Surface Extraction Using Tetrahedral Decomposition.	IEEE Trans. Vis. Comput. Graph.	1995	DBLP DOI BibTeX RDF	tetrahedral decomposition, homology theory, surface curvature, lossless surface compression, Marching Cubes, boundary representation, surface simplification, B-rep
28	Zhirong Sun, Tom L. Blundell	The pattern of common supersecondary structure (motifs) in protein database.	HICSS (5)	1995	DBLP DOI BibTeX RDF	common supersecondary structure, supersecondary motifs, residue conformation, nonregular structure regions, sequence pattern, database management systems, biology computing, proteins, proteins, motifs, chemistry computing, structure prediction, protein database, homology modelling
26	Johanna Immonen, Amauri H. Souza, Vikas Garg	Going beyond persistent homology using persistent homology.	CoRR	2023	DBLP DOI BibTeX RDF
26	Johanna Immonen, Amauri H. Souza, Vikas Garg	Going beyond persistent homology using persistent homology.	NeurIPS	2023	DBLP BibTeX RDF
26	Swati Sinha, Andrew M. Lynn, Dhwani K. Desai	Implementation of homology based and non-homology based computational methods for the identification and annotation of orphan enzymes: using Mycobacterium tuberculosis H37Rv as a case study.	BMC Bioinform.	2020	DBLP DOI BibTeX RDF
26	M. Z. Kazemi-Baneh	Homotopic Chain Maps Have Equal s-Homology and d-Homology.	Int. J. Math. Math. Sci.	2016	DBLP DOI BibTeX RDF
26	Pawel Dlotko, Hubert Wagner	Computing homology and persistent homology using iterated Morse decomposition	CoRR	2012	DBLP BibTeX RDF
26	Marian Mrozek, Thomas Wanner	Coreduction homology algorithm for inclusions and persistent homology.	Comput. Math. Appl.	2010	DBLP DOI BibTeX RDF
24	Nikola Milosavljevic, Dmitriy Morozov, Primoz Skraba	Zigzag persistent homology in matrix multiplication time.	SCG	2011	DBLP DOI BibTeX RDF
24	Lionel Morgado, Carlos Pereira	Incremental Kernel Machines for Protein Remote Homology Detection.	HAIS	2009	DBLP DOI BibTeX RDF	incremental learning, Kernel machines, protein classification
24	Ana Romero 0001, Graham Ellis, Julio Rubio 0001	Interoperating between computer algebra systems: computing homology of groups with kenzo and GAP.	ISSAC	2009	DBLP DOI BibTeX RDF	group cohomology, kenzo, openmath, interoperability, gap
24	Partha Niyogi, Stephen Smale, Shmuel Weinberger	Finding the Homology of Submanifolds with High Confidence from Random Samples.	Discret. Comput. Geom.	2008	DBLP DOI BibTeX RDF
24	Miklós Csürös, Bin Ma 0002	Rapid Homology Search with Neighbor Seeds.	Algorithmica	2007	DBLP DOI BibTeX RDF
24	Majid Beigi, Andreas Zell	Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data.	BIRD	2007	DBLP DOI BibTeX RDF
24	Shing-Hwang Doong	Protein Homology Modeling with Heuristic Search for Sequence Alignment.	HICSS	2007	DBLP DOI BibTeX RDF
24	Víctor Álvarez 0001, José Andrés Armario, María Dolores Frau, Pedro Real 0001	A Mathematica Notebook for Computing the Homology of Iterated Products of Groups.	ICMS	2006	DBLP DOI BibTeX RDF
24	Brian M. Gurbaxani, Parag Mallick	Finding Protein Domain Boundaries: An Automated, Non-Homology-Based Method.	IEEE Intell. Syst.	2005	DBLP DOI BibTeX RDF	amino acid patterns, protein domains, Bayesian algorithm
24	Jeff Erickson 0001, Kim Whittlesey	Greedy optimal homotopy and homology generators.	SODA	2005	DBLP BibTeX RDF
24	Xiandong Meng, Vipin Chaudhary	Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors.	ICPADS (2)	2005	DBLP DOI BibTeX RDF
24	Hiroshi Sunaga, Toshiyuki Oka, Kiyoshi Ueda, Hiroaki Matsumura	P2P-Based Grid Architecture for Homology Searching.	Peer-to-Peer Computing	2005	DBLP DOI BibTeX RDF	SIONet, Grid, P2P, DNA, BLAST
24	Miklós Csürös, Bin Ma 0002	Rapid Homology Search with Two-Stage Extension and Daughter Seeds.	COCOON	2005	DBLP DOI BibTeX RDF
24	Yan Fu, Ruixiang Sun, Qiang Yang 0001, Simin He 0001, Chunli Wang, Haipeng Wang, Shiguang Shan, Junfa Liu, Wen Gao 0001	A block-based support vector machine approach to the protein homology prediction task in KDD Cup 2004.	SIGKDD Explor.	2004	DBLP DOI BibTeX RDF	data mining, support vector machine, bioinformatics, data reduction, KDD Cup
24	Kwok Pui Choi, Fanfan Zeng, Louxin Zhang	Good Spaced Seeds For Homology Search.	BIBE	2004	DBLP DOI BibTeX RDF
24	Jinbo Xu, Daniel G. Brown 0001, Ming Li 0001, Bin Ma 0002	Optimizing Multiple Spaced Seeds for Homology Search.	CPM	2004	DBLP DOI BibTeX RDF
24	Yoshiki Yamaguchi, Yosuke Miyajima, Tsutomu Maruyama, Akihiko Konagaya	High Speed Homology Search Using Run-Time Reconfiguration.	FPL	2002	DBLP DOI BibTeX RDF
24	Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder 0001	Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search.	WABI	2002	DBLP DOI BibTeX RDF
22	Dominique Attali, André Lieutier	Optimal reconstruction might be hard.	SCG	2010	DBLP DOI BibTeX RDF	3SAT, homological simplification, sampling conditions, topological persistence, NP-completeness, shape reconstruction
22	Todd J. Treangen, Aaron E. Darling, Guillaume Achaz, Mark A. Ragan, Xavier Messeguer, Eduardo P. C. Rocha	A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	genome comparison, DNA repeats, local multiple alignment, gapped extension, hidden Markov model, Sequence alignment
22	Pedro Real 0001, Helena Molina-Abril	Cell AT-Models for Digital Volumes.	GbRPR	2009	DBLP DOI BibTeX RDF
22	Rocío González-Díaz, Adrian Ion, Mabel Iglesias Ham, Walter G. Kropatsch	Irregular Graph Pyramids and Representative Cocycles of Cohomology Generators.	GbRPR	2009	DBLP DOI BibTeX RDF	Graph pyramids, representative cocycles of cohomology generators
22	Jérôme Waldispühl, Charles W. O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger	Simultaneous Alignment and Folding of Protein Sequences.	RECOMB	2009	DBLP DOI BibTeX RDF
22	Takashi Abe, Shigehiko Kanaya, Toshimichi Ikemura	Batch-Learning Self-Organizing Map for Predicting Functions of Poorly-Characterized Proteins Massively Accumulated.	WSOM	2009	DBLP DOI BibTeX RDF	batch-learning SOM, oligopeptide frequency, high-performance supercomputer, bioinformatics, protein function
22	Marta Gîrdea, Laurent Noé, Gregory Kucherov	Back-Translation for Discovering Distant Protein Homologies.	WABI	2009	DBLP DOI BibTeX RDF
22	Kristian Brüning, Birgit Huber	Realising Smashing Localisations as Morphisms of DG Algebras.	Appl. Categorical Struct.	2008	DBLP DOI BibTeX RDF	Mathematics Subject Classification (2000) 16E45
22	George Janelidze	Galois Groups, Abstract Commutators, and Hopf Formula.	Appl. Categorical Struct.	2008	DBLP DOI BibTeX RDF	Mathematics Subject Classifications (2000) 18A40, 18A99, 20J05, 20J99, 57M05, 57M10
22	Thierry Zell	Topological Complexity of the Relative Closure of a Semi-Pfaffian Couple.	Discret. Comput. Geom.	2008	DBLP DOI BibTeX RDF	Pfaffian functions, Fewnomials, o-Minimal structures, Betti numbers
22	Daniel P. Miranker	Evolving models of biological sequence similarity.	ICDE Workshops	2008	DBLP DOI BibTeX RDF
22	Man-Wai Mak, Sun-Yuan Kung	Fusion of cleavage site detection and pairwise alignment for fast subcellular localization.	ICASSP	2008	DBLP DOI BibTeX RDF
22	Li Chen 0002, Yongwu Rong	Linear time recognition algorithms for topological invariants in 3D.	ICPR	2008	DBLP DOI BibTeX RDF
22	Todd J. Treangen, Aaron E. Darling, Mark A. Ragan, Xavier Messeguer	Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats.	ISBRA	2008	DBLP DOI BibTeX RDF
22	Eric Goubault, Emmanuel Haucourt	Components of the Fundamental Category II.	Appl. Categorical Struct.	2007	DBLP DOI BibTeX RDF	Mathematics Subject Classifications (2000) 18A20, 18A22, 18A32, 18A40
22	Michele Ceccarelli, Antonio Maratea	An Alternative Splicing Predictor in C.Elegans Based on Time Series Analysis.	WILF	2007	DBLP DOI BibTeX RDF	[Availability]: Matlab/Octave code is available at www.scoda.unisannio.it, Support Vector Machine, Autoregressive Model, Alternative Splicing
22	Mihaela Pertea, Steven Salzberg	Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding.	WABI	2007	DBLP DOI BibTeX RDF	Pfam, GHMM, ab intio gene finding, protein domain, profile HMM
22	Ming Li 0001, Bin Ma 0002, Louxin Zhang	Superiority and complexity of the spaced seeds.	SODA	2006	DBLP DOI BibTeX RDF
22	Ken-ichi Makino, Hideyasu Hirano	Design of RT-PCR Primers Based on Informational Method.	ICICIC (3)	2006	DBLP DOI BibTeX RDF
22	Christopher Carner, Miao Jin, Xianfeng Gu, Hong Qin 0001	Topology-driven Surface Mappings with Robust Feature Alignment.	IEEE Visualization	2005	DBLP DOI BibTeX RDF	Riemannian surface, Surface parameterization
22	Michael A. Thomas, Mitch D. Day, Luobin Yang	Computational Options for Bioinformatics Research in Evolutionary Biology.	International Conference on Computational Science (2)	2005	DBLP DOI BibTeX RDF
22	Greg Knowles, Paul Gardner-Stephen	A New Hardware Architecture for Genomic and Proteomic Sequence Alignment.	CSB	2004	DBLP DOI BibTeX RDF
22	Peter Bürgisser, Felipe Cucker	Counting complexity classes for numeric computations II: algebraic and semialgebraic sets.	STOC	2004	DBLP DOI BibTeX RDF	counting complexity classes, geometric degree, semialgebraic sets, completeness, Betti numbers, Euler characteristic
22	Martin Styner, Guido Gerig, Sarang C. Joshi, Stephen M. Pizer	Automatic and Robust Computation of 3D Medial Models Incorporating Object Variability.	Int. J. Comput. Vis.	2003	DBLP DOI BibTeX RDF	voronoi skeleton, medial shape description, medical imaging, shape analysis, skeleton pruning
22	Michael Defoin-Platel, Manuel Clergue, Philippe Collard	Maximum Homologous Crossover for Linear Genetic Programming.	EuroGP	2003	DBLP DOI BibTeX RDF
22	Ruben Abagyan	Computational structural proteomics and virtual ligand screening.	RECOMB	2002	DBLP DOI BibTeX RDF
22	Dianhui Wang, Nung Kion Lee, Tharam S. Dillon, Nicholas J. Hoogenraad	Protein Sequences Classification Using Modular RBF Neural Networks.	Australian Joint Conference on Artificial Intelligence	2002	DBLP DOI BibTeX RDF
22	Elisabetta Fortuna, Patrizia M. Gianni, Paola Parenti, Carlo Traverso	Computing the topology of real algebraic surfaces.	ISSAC	2002	DBLP DOI BibTeX RDF
22	Olivia Eriksson, Yishao Zhou, Arne Elofsson	Side Chain-Positioning as an Integer Programming Problem.	WABI	2001	DBLP DOI BibTeX RDF
22	George Tourlakis, John Mylopoulos	Some Results in Computational Topology.	J. ACM	1973	DBLP DOI BibTeX RDF
17	Stuart King, Yanni Sun, James R. Cole, Sakti Pramanik	BLAST Tree: Fast Filtering for Genomic Sequence Classification.	BIBE	2010	DBLP DOI BibTeX RDF	component, Bioinformatics, Blast, Homology, Metagenomic, Trie, Hmmer
17	Benoît Hudson, Gary L. Miller, Steve Oudot, Donald R. Sheehy	Topological inference via meshing.	SCG	2010	DBLP DOI BibTeX RDF	sparse voronoi refinement, mesh generation, persistent homology, topological inference
17	Vin de Silva, Mikael Vejdemo-Johansson	Persistent cohomology and circular coordinates.	SCG	2009	DBLP DOI BibTeX RDF	persistent cohomology, dimensionality reduction, computational topology, persistent homology
17	Roy Meshulam	On the Homological Dimension of Lattices.	Order	2008	DBLP DOI BibTeX RDF	Order complex, Lattice, Homology
17	Gunnar E. Carlsson, Tigran Ishkhanov, Vin de Silva, Afra Zomorodian	On the Local Behavior of Spaces of Natural Images.	Int. J. Comput. Vis.	2008	DBLP DOI BibTeX RDF	Klein bottle, Topology, Manifold, Natural images, Filtration, Persistent homology
17	Tamal K. Dey, Kuiyu Li, Jian Sun 0002, David Cohen-Steiner	Computing geometry-aware handle and tunnel loops in 3D models.	ACM Trans. Graph.	2008	DBLP DOI BibTeX RDF	surface loop, topology repair, topology, shape analysis, persistent homology, feature identification
17	Slobodan Maletic, Milan Rajkovic, Danijela Vasiljevic	Simplicial Complexes of Networks and Their Statistical Properties.	ICCS (2)	2008	DBLP DOI BibTeX RDF	Networks, topology, complex systems, homology, simplicial complexes, betti numbers, statistical mechanics
17	Inke Herms, Sven Rahmann	Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata.	WABI	2008	DBLP DOI BibTeX RDF	Seed sensitivity, Indel seed, Probabilistic arithmetic automaton, Homology search, Spaced seed, Multiple seeds
17	Thomas Lingner, Peter Meinicke	Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach.	WABI	2008	DBLP DOI BibTeX RDF	Pfam, target set reduction, machine learning, large-scale, protein classification, multi-class, metagenomics, homology search, protein function prediction, multi-label
17	Xin Gao 0001, Shuaicheng Li 0001, Yinan Lu	New Algorithms for the Spaced Seeds.	FAW	2007	DBLP DOI BibTeX RDF	bioinformatics, homology search, spaced seed
17	Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai	Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	Structure-sequence alignment, RNA structure homology search, dynamic programming, tree decomposition, parameterized algorithm, protein threading
17	Daniele Mundici	A Characterization of the free n-generated MV-algebra.	Arch. Math. Log.	2006	DBLP DOI BibTeX RDF	Free MV-algebra, Chang completeness theorem, McNaughton theorem, standard triangulation of the n-cube, Partition of unity, ?-functor, Singular homology group, Pyramidal function, MV-algebra, piecewise linear function
17	Peter Dawyndt, Marc Vancanneyt, Hans E. De Meyer, Jean Swings	Knowledge Accumulation and Resolution of Data Inconsistencies during the Integration of Microbial Information Sources.	IEEE Trans. Knowl. Data Eng.	2005	DBLP DOI BibTeX RDF	synonymy, error detection/correction, microbiology, Transitive closure, homology, union-find
17	Saugata Basu, Richard Pollack, Marie-Françoise Roy	Computing the first Betti number and the connected components of semi-algebraic sets.	STOC	2005	DBLP DOI BibTeX RDF	single exponential algorithms, Betti numbers, homology groups, semi-algebraic sets
17	Saugata Basu	Polynomial time algorithm for computing the top Betti numbers of semi-algebraic sets defined by quadratic inequalities.	STOC	2005	DBLP DOI BibTeX RDF	quadratic inequalities, single exponential algorithms, homology groups
17	David S. Vogel, Eric Gottschalk, Morgan C. Wang	Protein matching with custom neural network objective functions.	SIGKDD Explor.	2004	DBLP DOI BibTeX RDF	MITCH, neural networks, machine learning, classification, KDD, protein, homology, objective functions, KDD Cup
17	Michael A. Erdmann	Protein similarity from knot theory and geometric convolution.	RECOMB	2004	DBLP DOI BibTeX RDF	writhing, homotopy, protein structure, homology, robot motion planning, knot theory
17	S. Alireza Aghili, Ozgur D. Sahin, Divyakant Agrawal, Amr El Abbadi	Efficient Filtration of Sequence Similarity Search Through Singular Value Decomposition.	BIBE	2004	DBLP DOI BibTeX RDF	Approximate String Search, Sequence Homology, Bioinformatics, Singular Value Decomposition, Comparative genomics
17	Kwan-Yee Kenneth Wong, Paulo R. S. Mendonça, Roberto Cipolla	Camera Calibration from Surfaces of Revolution.	IEEE Trans. Pattern Anal. Mach. Intell.	2003	DBLP DOI BibTeX RDF	harmonic homology, Camera calibration, vanishing point, surface of revolution, absolute conic
17	Yoshihisa Shinagawa, Ryoji Kawamichi, Tosiyasu L. Kunii, Shigeru Owada	Developing Surfaces.	Shape Modeling International	2002	DBLP DOI BibTeX RDF	transformation, texture mapping, groups, development, homology, algebraic topology
17	Herbert Edelsbrunner, David Letscher, Afra Zomorodian	Topological Persistence and Simplification.	FOCS	2000	DBLP DOI BibTeX RDF	topological persistence, growing complex, computational geometry, computational geometry, topology, fast algorithms, computational topology, topological change, filtration, algorithm theory, topological simplification, homology groups, alpha shapes
17	Maurice Herlihy, Nir Shavit	The topological structure of asynchronous computability.	J. ACM	1999	DBLP DOI BibTeX RDF	decision tasks, wait-tree algorithms, distributed computing, homology, simplicial complex, asynchronous distributed computation, algebraic topology
17	Terence Hwa, Michael Lässig	Optimal detection of sequence similarity by local alignment.	RECOMB	1998	DBLP DOI BibTeX RDF	optimization, sequence alignment, phase transition, homology
17	Tamal K. Dey, Sumanta Guha	Algorithms for Manifolds and Simplicial Complexes in Euclidean 3-Space (Preliminary Version).	STOC	1996	DBLP DOI BibTeX RDF	simplicial maps, algorithms, surfaces, links, computational topology, manifolds, simplicial complexes, Betti numbers, knots, homology groups, algebraic topology
13	Sara Kalisnik, Davorin Lesnik	Finding the homology of manifolds using ellipsoids.	J. Appl. Comput. Topol.	2024	DBLP DOI BibTeX RDF
13	Jiyuan Xing, Senlin Luo, Limin Pan, Jingwei Hao, Yingdan Guan, Zhouting Wu	HGE-BVHD: Heterogeneous graph embedding scheme of complex structure functions for binary vulnerability homology discrimination.	Expert Syst. Appl.	2024	DBLP DOI BibTeX RDF
13	Martina Flammer	Persistent Homology-Based Classification of Chaotic Multi-variate Time Series: Application to Electroencephalograms.	SN Comput. Sci.	2024	DBLP DOI BibTeX RDF
13	Chenyuan Bian, Nan Xia, Anmu Xie, Shan Cong, Qian Dong	Adversarially Trained Persistent Homology Based Graph Convolutional Network for Disease Identification Using Brain Connectivity.	IEEE Trans. Medical Imaging	2024	DBLP DOI BibTeX RDF
13	Andrew J. Blumberg, Michael Lesnick	Stability of 2-Parameter Persistent Homology.	Found. Comput. Math.	2024	DBLP DOI BibTeX RDF
13	Marzieh Varposhti	Distributed homology-based sensor selection and scheduling in wireless sensor networks.	J. Supercomput.	2024	DBLP DOI BibTeX RDF
13	Marzieh Varposhti	Distributed homology-based algorithm for solving Set k-Cover problem in heterogeneous directional sensor networks.	J. Supercomput.	2024	DBLP DOI BibTeX RDF
13	Azzurra Ciliberti	A deletion-contraction long exact sequence for chromatic symmetric homology.	Eur. J. Comb.	2024	DBLP DOI BibTeX RDF
13	Konstantin Häberle, Barbara Bravi, Anthea Monod	Wavelet-Based Density Estimation for Persistent Homology.	SIAM/ASA J. Uncertain. Quantification	2024	DBLP DOI BibTeX RDF
13	Ekta U. Samani, Ashis G. Banerjee	Persistent Homology Meets Object Unity: Object Recognition in Clutter.	IEEE Trans. Robotics	2024	DBLP DOI BibTeX RDF
13	Saugata Basu, Nathanael Cox	Harmonic Persistent Homology.	SIAM J. Appl. Algebra Geom.	2024	DBLP DOI BibTeX RDF
13	Depeng Gao, Yuanzhi Zhang, Hongwei Lin	Persistent Homology-Driven Optimization of Effective Relative Density Range for Triply Periodic Minimal Surface.	CoRR	2024	DBLP DOI BibTeX RDF
13	Shashank A Deshpande, Hamsa Balakrishnan	Characterizing Flow Complexity in Transportation Networks using Graph Homology.	CoRR	2024	DBLP DOI BibTeX RDF
13	Chaolong Ying, Xinjian Zhao, Tianshu Yu	Boosting Graph Pooling with Persistent Homology.	CoRR	2024	DBLP DOI BibTeX RDF
13	Yu Chen, Hongwei Lin	Extraction of Singular Patterns from a Vector Field via Persistent Path Homology.	CoRR	2024	DBLP DOI BibTeX RDF
13	Ziqi Yuan, Haoyi Zhou, Tianyu Chen, Jianxin Li 0002	PhoGAD: Graph-based Anomaly Behavior Detection with Persistent Homology Optimization.	CoRR	2024	DBLP DOI BibTeX RDF
13	Eric Pichon-Pharabod	A semi-numerical algorithm for the homology lattice and periods of complex elliptic surfaces over the projective line.	CoRR	2024	DBLP DOI BibTeX RDF
13	Anton François, Raphaël Tinarrage	Train-Free Segmentation in MRI with Cubical Persistent Homology.	CoRR	2024	DBLP DOI BibTeX RDF