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Found 149 publication records. Showing 148 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | K. Bretonnel Cohen, Helen L. Johnson 0001, Karin Verspoor, Christophe Roeder, Lawrence Hunter |
The structural and content aspects of abstracts versus bodies of full text journal articles are different.  |
BMC Bioinform.  |
2010 |
DBLP DOI BibTeX RDF |
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| 1 | Carsten Görg, Hannah J. Tipney, Karin Verspoor, William A. Baumgartner Jr., K. Bretonnel Cohen, John T. Stasko, Lawrence Hunter |
Visualization and Language Processing for Supporting Analysis across the Biomedical Literature. |
KES (4) |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber (eds.) |
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010 |
BioNLP@ACL |
2010 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Christophe Roeder, William A. Baumgartner Jr., Lawrence Hunter, Karin Verspoor |
Test Suite Design for Biomedical Ontology Concept Recognition Systems. |
LREC |
2010 |
DBLP BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen |
Integrating text mining into high-throughput assay analysis. |
BMC Bioinform. |
2010 |
DBLP DOI BibTeX RDF |
|
| 1 | Karin Verspoor, K. Bretonnel Cohen, Lawrence Hunter |
The textual characteristics of traditional and Open Access scientific journals are similar. |
BMC Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
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| 1 | Thomas C. Wiegers, Allan Peter Davis, K. Bretonnel Cohen, Lynette Hirschman, Carolyn J. Mattingly |
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD). |
BMC Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Yoshinobu Kano, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun'ichi Tsujii |
U-Compare: share and compare text mining tools with UIMA. |
Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Karin Verspoor, Daniel Dvorkin, K. Bretonnel Cohen, Lawrence Hunter |
Ontology quality assurance through analysis of term transformations. |
Bioinform. |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | Wendy Webber Chapman, K. Bretonnel Cohen |
Current issues in biomedical text mining and natural language processing. |
J. Biomed. Informatics |
2009 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson 0001, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Lawrence Hunter |
High-precision biological event extraction with a concept recognizer. |
BioNLP@HLT-NAACL (Shared Task) |
2009 |
DBLP BibTeX RDF |
|
| 1 | Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber (eds.) |
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009 |
BioNLP@HLT-NAACL |
2009 |
DBLP BibTeX RDF |
|
| 1 | Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr., Helen L. Johnson 0001, Philip V. Ogren, K. Bretonnel Cohen |
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber |
Themes in biomedical natural language processing: BioNLP08. |
BMC Bioinform. |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lawrence Hunter |
Getting Started in Text Mining. |
PLoS Comput. Biol. |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Hong Yu, Philip E. Bourne, Lynette Hirschman |
Session Introduction. |
Pacific Symposium on Biocomputing |
2008 |
DBLP BibTeX RDF |
|
| 1 | J. Gregory Caporaso, Nita Deshpande, J. Lynn Fink, Philip E. Bourne, K. Bretonnel Cohen, Lawrence Hunter |
Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks. |
Pacific Symposium on Biocomputing |
2008 |
DBLP BibTeX RDF |
|
| 1 | Zhang-Zhi Hu, K. Bretonnel Cohen, Lynette Hirschman, Alfonso Valencia, Hongfang Liu, Michelle G. Giglio, Cathy H. Wu |
iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology. |
BIBM |
2008 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence Hunter |
Software Testing and the Naturally Occurring Data Assumption in Natural Language Processing. |
SETQALNLP |
2008 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Bob Carpenter (eds.) |
Software Engineering, Testing, and Quality Assurance for Natural Language Processing@ACL 2008, Columbus, Ohio, USA, June 20, 2008 |
SETQALNLP |
2008 |
DBLP BibTeX RDF |
|
| 1 | Dina Demner-Fushman, Sophia Ananiadou, Kevin Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber (eds.) |
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008 |
BioNLP |
2008 |
DBLP BibTeX RDF |
|
| 1 | J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen, Lawrence Hunter |
MutationFinder: a high-performance system for extracting point mutation mentions from text. |
Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen, Lawrence Hunter |
Rapid Pattern Development for Concept Recognition Systems: Application to Point mutations. |
J. Bioinform. Comput. Biol. |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | Helen L. Johnson 0001, K. Bretonnel Cohen, Lawrence Hunter |
A Fault Model for Ontology Mapping, Alignment, and Linking Systems. |
Pacific Symposium on Biocomputing |
2007 |
DBLP BibTeX RDF |
|
| 1 | Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter |
Generif Quality Assurance as Summary Revision. |
Pacific Symposium on Biocomputing |
2007 |
DBLP BibTeX RDF |
|
| 1 | Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu 0001, K. Bretonnel Cohen |
Session Introduction. |
Pacific Symposium on Biocomputing |
2007 |
DBLP BibTeX RDF |
|
| 1 | William A. Baumgartner Jr., K. Bretonnel Cohen, Lynne M. Fox, George K. Acquaah-Mensah, Lawrence Hunter |
Manual curation is not sufficient for annotation of genomic databases. |
ISMB/ECCB (Supplement of Bioinformatics) |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen |
BioNLP. |
HLT-NAACL (Tutorial Abstracts) |
2007 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Dina Demner-Fushman, Carol Friedman, Lynette Hirschman, John Pestian (eds.) |
Biological, translational, and clinical language processing, BioNLP@ACL 2007, Prague, Czech Republic, June 29, 2007 |
BioNLP@ACL |
2007 |
DBLP BibTeX RDF |
|
| 1 | John P. Pestian, Chris Brew, Pawel Matykiewicz, D. J. Hovermale, Neil Johnson, K. Bretonnel Cohen, Wlodzislaw Duch |
A shared task involving multi-label classification of clinical free text. |
BioNLP@ACL |
2007 |
DBLP BibTeX RDF |
|
| 1 | Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu 0001, Kevin Bretonnel Cohen |
Frontiers of biomedical text mining: current progress. |
Briefings Bioinform. |
2007 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lawrence Hunter |
A critical review of PASBio's argument structures for biomedical verbs. |
BMC Bioinform. |
2006 |
DBLP DOI BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Olivier Bodenreider, Lynette Hirschman |
Session Introduction. |
Pacific Symposium on Biocomputing |
2006 |
DBLP BibTeX RDF |
|
| 1 | Helen L. Johnson 0001, K. Bretonnel Cohen, William A. Baumgartner Jr., Zhiyong Lu, Michael Bada, Todd Kester, Hyunmin Kim, Lawrence Hunter |
Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies. |
Pacific Symposium on Biocomputing |
2006 |
DBLP BibTeX RDF |
|
| 1 | Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter |
Finding GeneRIFs via Gene Ontology Annotations. |
Pacific Symposium on Biocomputing |
2006 |
DBLP BibTeX RDF |
|
| 1 | J. Gregory Caporaso, William A. Baumgartner Jr., Hyunmin Kim, Zhiyong Lu, Helen L. Johnson 0001, Olga Medvedeva, Anna Lindemann, Lynne M. Fox, Elizabeth K. White, K. Bretonnel Cohen, Lawrence Hunter |
Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering. |
TREC |
2006 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lawrence Hunter |
A critical review of PASBio's argument structures for biomedical verbs. |
SMBM |
2006 |
DBLP BibTeX RDF |
|
| 1 | Helen L. Johnson 0001, William A. Baumgartner Jr., Martin Krallinger, K. Bretonnel Cohen, Lawrence Hunter |
Refactoring Corpora. |
BioNLP@NAACL-HLT |
2006 |
DBLP BibTeX RDF |
|
| 1 | Karin Verspoor, Kevin Bretonnel Cohen, Ben Goertzel, Inderjeet Mani (eds.) |
Proceedings of the Workshop on Linking Natural Language and Biology, BioNLP@NAACL-HLT 2006, New York, NY, USA, June 8, 2006 |
BioNLP@NAACL-HLT |
2006 |
DBLP BibTeX RDF |
|
| 1 | Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Ogren, Lawrence Hunter |
BioCreAtIvE Task1A: entity identification with a stochastic tagger. |
BMC Bioinform. |
2005 |
DBLP DOI BibTeX RDF |
|
| 1 | Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter |
Implications of Compositionality in the Gene Ontology for Its Curation and Usage . |
Pacific Symposium on Biocomputing |
2005 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lynne M. Fox, Philip V. Ogren, Lawrence Hunter |
Corpus Design for Biomedical Natural Language Processing. |
LBLODMBS@IDMB |
2005 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lynette Hirschman, Hagit Shatkay, Christian Blaschke (eds.) |
Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics@ISMB 2005, Detroit, MI, USA June 24, 2005 |
LBLODMBS@ISMB |
2005 |
DBLP BibTeX RDF |
|
| 1 | J. Gregory Caporaso, William A. Baumgartner Jr., K. Bretonnel Cohen, Helen L. Johnson 0001, Jesse Paquette, Lawrence Hunter |
Concept Recognition and the TREC Genomics Tasks. |
TREC |
2005 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Philip V. Ogren, Lynne M. Fox, Lawrence Hunter |
Empirical data on corpus design and usage in biomedical natural language processing. |
AMIA |
2005 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Lawrence Hunter |
Natural Language Processing and Systems Biology. |
Artificial Intelligence Methods And Tools For Systems Biology |
2004 |
DBLP DOI BibTeX RDF |
|
| 1 | Philip V. Ogren, K. Bretonnel Cohen, George K. Acquaah-Mensah, Jens Eberlein, Lawrence Hunter |
The Compositional Structure of Gene Ontology Terms. |
Pacific Symposium on Biocomputing |
2004 |
DBLP BibTeX RDF |
|
| 1 | K. Bretonnel Cohen, Andrew Dolbey, George K. Acquaah-Mensah, Lawrence Hunter |
Contrast and variability in gene names. |
ACL Workshop on Natural Language Processing in the Biomedical Domain |
2002 |
DBLP DOI BibTeX RDF |
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