Search results for "Peptides"

Hits ?▲	Authors	Title	Venue	Year	Link
15	Ezequiel N. Frigini, Rodolfo D. Porasso, Tamás Beke-Somfai, José Javier López Cascales, Ricardo D. Enriz, Sergio Pantano	The Mechanism of Antimicrobial Small-Cationic Peptides from Coarse-Grained Simulations.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
15	Minghua Zhao, Steven X. Xu 0001, Yaning Yang, Min Yuan	GGNpTCR: A Generative Graph Structure Neural Network for Predicting Immunogenic Peptides for T-cell Immune Response.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
15	Tomás F. D. Silva, Hannah Visca, Craig Klumpp, Oleg A. Andreev, Yana K. Reshetnyak, Miguel Machuqueiro	Arginine Residues Modulate the Membrane Interactions of pHLIP Peptides.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
15	Jianan Li, Keisuke Yanagisawa, Masatake Sugita, Takuya Fujie, Masahito Ohue, Yutaka Akiyama	CycPeptMPDB: A Comprehensive Database of Membrane Permeability of Cyclic Peptides.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
15	Jiahui Guan, Lantian Yao, Chia-Ru Chung, Peilin Xie, Yilun Zhang, Junyang Deng, Ying-Chih Chiang, Tzong-Yi Lee	Predicting Anti-inflammatory Peptides by Ensemble Machine Learning and Deep Learning.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
15	Felix Teufel, Jan C. Refsgaard, Marina A. Kasimova, Kristine K. Deibler, Christian T. Madsen, Carsten Stahlhut, Mads Grønborg, Ole Winther, Dennis Madsen	Deorphanizing Peptides Using Structure Prediction.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
15	Qitong Yuan, Keyi Chen 0005, Yimin Yu, Nguyen-Quoc-Khanh Le, Matthew Chin Heng Chua	Prediction of anticancer peptides based on an ensemble model of deep learning and machine learning using ordinal positional encoding.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Zhenling Peng, Zixia Li, Qiaozhen Meng, Bi Zhao, Lukasz A. Kurgan	CLIP: accurate prediction of disordered linear interacting peptides from protein sequences using co-evolutionary information.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Qiushi Cao, Cheng Ge, Xuejie Wang, Peta J. Harvey, Zixuan Zhang, Yuan Ma, Xianghong Wang, Xinying Jia, Mehdi Mobli, David J. Craik, Tao Jiang 0057, Jinbo Yang, Zhiqiang Wei 0002, Yan Wang, Shan Chang, Rilei Yu	Designing antimicrobial peptides using deep learning and molecular dynamic simulations.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Jing Xu, Fuyi Li, Chen Li 0021, Xudong Guo, Cornelia B. Landersdorfer, Hsin-Hui Shen, Anton Y. Peleg, Jian Li, Seiya Imoto, Jianhua Yao 0001, Tatsuya Akutsu, Jiangning Song	iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Zheng Ye, Shaohao Li, Xue Mi, Baoyi Shao, Zhu Dai, Bo Ding, Songwei Feng, Bo Sun, Yang Shen, Zhongdang Xiao	STMHCpan, an accurate Star-Transformer-based extensible framework for predicting MHC I allele binding peptides.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Xin Zhang, Lesong Wei, Xiucai Ye, Kai Zhang, Saisai Teng, Zhongshen Li, Junru Jin, Min Jae Kim, Tetsuya Sakurai, Lizhen Cui, Balachandran Manavalan, Leyi Wei	SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Yitian Fang, Fan Xu, Lesong Wei, Yi Jiang, Jie Chen 0001, Leyi Wei, Dong-Qing Wei	AFP-MFL: accurate identification of antifungal peptides using multi-view feature learning.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
15	Carlos Pintado-Grima, Oriol Bárcenas, Valentín Iglesias, Jaime Santos, Zoe Manglano-Artuñedo, Irantzu Pallarès, Michal Burdukiewicz, Salvador Ventura	aSynPEP-DB: a database of biogenic peptides for inhibiting α-synuclein aggregation.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
15	Ulka Gawde, Shuvechha Chakraborty, Faiza Hanif Waghu, Ram Shankar Barai, Ashlesha Khanderkar, Rishikesh Indraguru, Tanmay Shirsat, Susan Idicula-Thomas	CAMPR4: a database of natural and synthetic antimicrobial peptides.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
15	Zhongshen Li, Junru Jin, Yu Wang, Wentao Long, Yuanhao Ding, Haiyan Hu, Leyi Wei	ExamPle: explainable deep learning framework for the prediction of plant small secreted peptides.	Bioinform.	2023	DBLP DOI BibTeX RDF
15	Felix Teufel, Jan C. Refsgaard, Christian T. Madsen, Carsten Stahlhut, Mads Grønborg, Ole Winther, Dennis Madsen	DeepPeptide predicts cleaved peptides in proteins using conditional random fields.	Bioinform.	2023	DBLP DOI BibTeX RDF
15	Ke Yan 0003, Yichen Guo, Bin Liu	PreTP-2L: identification of therapeutic peptides and their types using two-layer ensemble learning framework.	Bioinform.	2023	DBLP DOI BibTeX RDF
15	Longendri Aguilera-Mendoza, Sebastián Ayala-Ruano, Felix Martinez-Rios, Edgar Chávez, César R. García-Jacas, Carlos A. Brizuela, Yovani Marrero-Ponce	StarPep Toolbox: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks.	Bioinform.	2023	DBLP DOI BibTeX RDF
15	J. Thorben Frank, Oliver T. Unke, Klaus-Robert Müller, Stefan Chmiela	From Peptides to Nanostructures: A Euclidean Transformer for Fast and Stable Machine Learned Force Fields.	CoRR	2023	DBLP DOI BibTeX RDF
15	Zebin Ma, Yonglin Zou, Xiaobin Huang, Wenjin Yan, Hao Xu, Jiexin Yang, Ying Zhang, Jinqi Huang	pLMFPPred: a novel approach for accurate prediction of functional peptides integrating embedding from pre-trained protein language model and imbalanced learning.	CoRR	2023	DBLP DOI BibTeX RDF
15	Onur Karakaya, Zeynep Hilal Kilimci	An Efficient Consolidation of Word Embedding and Deep Learning Techniques for Classifying Anticancer Peptides: FastText+BiLSTM.	CoRR	2023	DBLP DOI BibTeX RDF
15	Colin A. Grambow, Hayley Weir, Christian N. Cunningham, Tommaso Biancalani, Kangway V. Chuang	CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine Learning.	CoRR	2023	DBLP DOI BibTeX RDF
15	Standa Na, Dhammika Leshan Wannigama, Thammakorn Saethang	Antimicrobial peptides recognition using weighted physicochemical property encoding.	J. Bioinform. Comput. Biol.	2023	DBLP DOI BibTeX RDF
15	Zizheng Yu, Zhijian Yin, Hongliang Zou	iAMY-RECMFF: Identifying amyloidgenic peptides by using residue pairwise energy content matrix and features fusion algorithm.	J. Bioinform. Comput. Biol.	2023	DBLP DOI BibTeX RDF
15	Wanyun Zhou, Yufei Liu, Yingxin Li, Siqi Kong, Weilin Wang, Boyun Ding, Jiyun Han, Chaozhou Mou, Xin Gao 0001, Juntao Liu	TriNet: A tri-fusion neural network for the prediction of anticancer and antimicrobial peptides.	Patterns	2023	DBLP DOI BibTeX RDF
15	Dongya Qin, Linna Jiao, Ruihong Wang, Yi Zhao, Youjin Hao, Guizhao Liang	Prediction of antioxidant peptides using a quantitative structure-activity relationship predictor (AnOxPP) based on bidirectional long short-term memory neural network and interpretable amino acid descriptors.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
15	Hua Deng, Meng Ding, Yimeng Wang, Weihua Li 0005, Guixia Liu, Yun Tang 0001	ACP-MLC: A two-level prediction engine for identification of anticancer peptides and multi-label classification of their functional types.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
15	Shaherin Basith, Nhat Truong Pham, Minkyung Song, Gwang Lee, Balachandran Manavalan	ADP-Fuse: A novel two-layer machine learning predictor to identify antidiabetic peptides and diabetes types using multiview information.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
15	Yosef Masoudi-Sobhanzadeh, Mohammad M. Pourseif, Ava Khalili-Sani, Behzad Jafari, Aysan Salemi, Yadollah Omidi	Deciphering anti-biofilm property of Arthrospira platensis-origin peptides against Staphylococcus aureus.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
15	Naorem Leimarembi Devi, Neelam Sharma, Gajendra P. S. Raghava	A web server for predicting and scanning of IL-5 inducing peptides using alignment-free and alignment-based method.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
15	Zhaowei Wang 0005, Jun Meng, Haibin Li, Shihao Xia, Yu Wang, Yushi Luan	PAMPred: A hierarchical evolutionary ensemble framework for identifying plant antimicrobial peptides.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
15	Xiaoyi Guo, Prayag Tiwari, Quan Zou 0001, Yijie Ding	Subspace projection-based weighted echo state networks for predicting therapeutic peptides.	Knowl. Based Syst.	2023	DBLP DOI BibTeX RDF
15	Zhen Cui, Siguo Wang, Ying He, Zhan-Heng Chen, Qinhu Zhang	DeepTPpred: A Deep Learning Approach With Matrix Factorization for Predicting Therapeutic Peptides by Integrating Length Information.	IEEE J. Biomed. Health Informatics	2023	DBLP DOI BibTeX RDF
15	Rodrigo Ochoa, J. B. Brown, Thomas Fox	pyPept: a python library to generate atomistic 2D and 3D representations of peptides.	J. Cheminformatics	2023	DBLP DOI BibTeX RDF
15	Ansar Naseem, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan	BBB-PEP-prediction: improved computational model for identification of blood-brain barrier peptides using blending position relative composition specific features and ensemble modeling.	J. Cheminformatics	2023	DBLP DOI BibTeX RDF
15	Rui Su, Jujuan Zhuang, Shuhan Liu, Di Liu, Kexin Feng	EnILs: A General Ensemble Computational Approach for Predicting Inducing Peptides of Multiple Interleukins.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
15	Tao-Chuan Shih, Cing-Han Yang, Ying-Ja Chen, Li-Tzu Yeh, Chi-Wei Lu, Tun-Wen Pai	PepTracR: a Centralized Database for Pathogen Peptides and Neoepitopes based on 3D Structures information and Similarity-search in T-cell Immunotherapy Research.	ICBBS	2023	DBLP DOI BibTeX RDF
15	Taslim Murad, Sarwan Ali, Murray Patterson	A New Direction in Membranolytic Anticancer Peptides classification: Combining Spaced k-mers with Chaos Game Representation.	INNS DLIA@IJCNN	2023	DBLP DOI BibTeX RDF
15	Ümmü Gülsüm Söylemez, Malik Yousef, Burcu Bakir-Gungor	Prediction of Antimicrobial Peptides Using Deep Neural Networks.	BIOINFORMATICS	2023	DBLP DOI BibTeX RDF
15	Jiliang Xu, Chungui Xu, Ruifen Cao, Yonghui He, Yannan Bin, Chun-Hou Zheng 0001	Generative Adversarial Network-Based Data Augmentation Method for Anti-coronavirus Peptides Prediction.	ICIC (3)	2023	DBLP DOI BibTeX RDF
15	Peifu Bian, Lichun Zou, Haiyan Wang 0004, Jingjie Sha	Detection of short peptides and dimers using silicon nitride nanopores.	NEMS	2023	DBLP DOI BibTeX RDF
15	Shaokai Wang, Ming Zhu, Bin Ma 0002	NeoMS: Identification of Novel MHC-I Peptides with Tandem Mass Spectrometry.	ISBRA	2023	DBLP DOI BibTeX RDF
15	Ruiqi Liu, Zilong Zhang, Xiuhao Fu, Shankai Yan, Feifei Cui	AIPPT: Predicts anti-inflammatory peptides using the most characteristic subset of bases and sequences by stacking ensemble learning strategies.	BIBM	2023	DBLP DOI BibTeX RDF
15	Md Mamun Ali, Kawsar Ahmed, Francis M. Bui, Li Chen	STACKION: Ion Channel-Modulating Peptides Identification Using Stacking-Based Ensemble Machine Learning.	CCECE	2023	DBLP DOI BibTeX RDF
15	Gilberto Tura Diano, Richard Himmiwat, Katrina Adajar, Marnnela Guinto, Elvira Bolinget, Marineil Gomez, Lemmuel Tayo	In silico Molecular Docking Studies and MM/GBSA Analysis of Select Conotoxin O1 peptides with mas-related G protein coupled receptor X2.	ICBRA	2023	DBLP DOI BibTeX RDF
15	Sandra Romero-Molina	Development of computational tools for the in silico design and optimization of bioactive peptides (PDF / PS)		2023	DOI RDF
15	Miguel Angel Freire	Short non-coded peptides interacting with cofactors facilitated the integration of early chemical networks.	Biosyst.	2022	DBLP DOI BibTeX RDF
15	Meshari Alazmi, Olaa A. Motwalli	Immuno-Informatics Based Peptides: An Approach for Vaccine Development Against Outer Membrane Proteins of Pseudomonas Genus.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
15	Siyuan Zhao, Jun Meng, Qiang Kang, Yushi Luan	Identifying LncRNA-Encoded Short Peptides Using Optimized Hybrid Features and Ensemble Learning.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
15	Muhammad Arif 0012, Muhammad Kabir, Saeed Ahmed, Abid Khan, Fang Ge, Adel Khelifi, Dong-Jun Yu	DeepCPPred: A Deep Learning Framework for the Discrimination of Cell-Penetrating Peptides and Their Uptake Efficiencies.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
15	Yuanying Zhuang, Xiangrong Liu, Yue Zhong, Longxin Wu	A Deep Ensemble Predictor for Identifying Anti-Hypertensive Peptides Using Pretrained Protein Embedding.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
15	Sadaf Gull, Fayyaz A. Minhas	AMP0: Species-Specific Prediction of Anti-microbial Peptides Using Zero and Few Shot Learning.	IEEE ACM Trans. Comput. Biol. Bioinform.	2022	DBLP DOI BibTeX RDF
15	Phasit Charoenkwan, Pramote Chumnanpuen, Nalini Schaduangrat, Pietro Lio', Mohammad Ali Moni, Watshara Shoombuatong	Improved prediction and characterization of blood-brain barrier penetrating peptides using estimated propensity scores of dipeptides.	J. Comput. Aided Mol. Des.	2022	DBLP DOI BibTeX RDF
15	Rodrigo Ochoa, Pilar Cossio, Thomas Fox	Protocol for iterative optimization of modified peptides bound to protein targets.	J. Comput. Aided Mol. Des.	2022	DBLP DOI BibTeX RDF
15	Maxence Delaunay, Tâp Ha-Duong	Des3PI: a fragment-based approach to design cyclic peptides targeting protein-protein interactions.	J. Comput. Aided Mol. Des.	2022	DBLP DOI BibTeX RDF
15	Sangjeong Lee, Heejin Park, Hyunwoo Kim 0003	False discovery rate estimation using candidate peptides for each spectrum.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
15	Milad Salem, Arash Keshavarzi Arshadi, Jiann-Shiun Yuan	AMPDeep: hemolytic activity prediction of antimicrobial peptides using transfer learning.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
15	Juan Paulo Sánchez-Hernández, Juan Frausto Solís, Diego Soto-Monterrubio, Juan Javier González Barbosa, Edgar Roman-Rangel	A Peptides Prediction Methodology with Fragments and CNN for Tertiary Structure Based on GRSA2.	Axioms	2022	DBLP DOI BibTeX RDF
15	Ariel F. Pérez-Mellor, Riccardo Spezia, Anne Zehnacker	How Symmetry Influences the Dissociation of Protonated Cyclic Peptides.	Symmetry	2022	DBLP DOI BibTeX RDF
15	Shahid Akbar, Maqsood Hayat, Muhammad Tahir 0007, Salman Khan 0005, Fawaz Khaled Alarfaj	cACP-DeepGram: Classification of anticancer peptides via deep neural network and skip-gram-based word embedding model.	Artif. Intell. Medicine	2022	DBLP DOI BibTeX RDF
15	Justin Legleiter, Ravindra Thakkar, Astrid Velásquez-Silva, Ingrid Miranda-Carvajal, Susan Whitaker, John Tomich, Jeffrey Comer	Design of Peptides that Fold and Self-Assemble on Graphite.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Brandon Úsuga-Acevedo, Yadiris García, Carola F. Díaz, Verónica A. Jiménez	Rational Discovery of Microtubule-Stabilizing Peptides.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Jozica Dolenc, Esme J. Haywood, Tingting Zhu, Lorna J. Smith	Backbone N-Amination Promotes the Folding of β-Hairpin Peptides via a Network of Hydrogen Bonds.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Amit Kumar, Harish Vashisth	Role of Mutations in Differential Recognition of Viral RNA Molecules by Peptides.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Masatake Sugita, Takuya Fujie, Keisuke Yanagisawa, Masahito Ohue, Yutaka Akiyama	Lipid Composition Is Critical for Accurate Membrane Permeability Prediction of Cyclic Peptides by Molecular Dynamics Simulations.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Thomas Fox, Michael Bieler, Peter Haebel, Rodrigo Ochoa, Stefan Peters, Alexander Weber 0002	BILN: A Human-Readable Line Notation for Complex Peptides.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Shuzhe Wang, Kajo Krummenacher, Gregory A. Landrum, Benjamin D. Sellers, Paola Di Lello, Sarah J. Robinson, Bryan Martin, Jeffrey K. Holden, Jeffrey Y. K. Tom, Anastasia C. Murthy, Nataliya Popovych, Sereina Riniker	Incorporating NOE-Derived Distances in Conformer Generation of Cyclic Peptides with Distance Geometry.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Pedro A. Valiente, Satra Nim, Jinah Lee, Seungtaek Kim, Philip M. Kim	Targeting the Receptor-Binding Motif of SARS-CoV-2 with D-Peptides Mimicking the ACE2 Binding Helix: Lessons for Inhibiting Omicron and Future Variants of Concern.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Erik Otovic, Marko Njirjak, Daniela Kalafatovic, Goran Mausa	Sequential Properties Representation Scheme for Recurrent Neural Network-Based Prediction of Therapeutic Peptides.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	James Vergilio, Christopher Lockhart, Dmitri K. Klimov	De Novo Transmembrane Aggregation of Aβ10-40 Peptides in an Anionic Lipid Bilayer.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
15	Waqar Hussain	sAMP-PFPDeep: Improving accuracy of short antimicrobial peptides prediction using three different sequence encodings and deep neural networks.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Caimao Zhou, Dejun Peng, Bo Liao, Ranran Jia, Fang-Xiang Wu	ACP_MS: prediction of anticancer peptides based on feature extraction.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Ritesh Sharma, Sameer Shrivastava, Sanjay Kumar Singh, Abhinav Kumar 0003, Sonal Saxena, Raj Kumar Singh	Deep-AFPpred: identifying novel antifungal peptides using pretrained embeddings from seq2vec with 1DCNN-BiLSTM.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Xiaoyi Guo, Yizhang Jiang, Quan Zou 0001	Structured Sparse Regularized TSK Fuzzy System for predicting therapeutic peptides.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	César R. García-Jacas, Sergio Alejandro Pinacho-Castellanos, Luis A. García-González, Carlos A. Brizuela	Do deep learning models make a difference in the identification of antimicrobial peptides?	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Hiroyuki Kurata, Sho Tsukiyama, Balachandran Manavalan	iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Vishakha Singh, Sameer Shrivastava, Sanjay Kumar Singh, Abhinav Kumar 0003, Sonal Saxena	StaBle-ABPpred: a stacked ensemble predictor based on biLSTM and attention mechanism for accelerated discovery of antibacterial peptides.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Balachandran Manavalan, Shaherin Basith, Gwang Lee	Comparative analysis of machine learning-based approaches for identifying therapeutic peptides targeting SARS-CoV-2.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Vishakha Singh, Sameer Shrivastava, Sanjay Kumar Singh, Abhinav Kumar 0003, Sonal Saxena	Accelerating the discovery of antifungal peptides using deep temporal convolutional networks.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Kai-Yao Huang, Hui-Ju Kao, Tzu-Hsiang Weng, Chia-Hung Chen, Shun-Long Weng	iDVIP: identification and characterization of viral integrase inhibitory peptides.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	César R. García-Jacas, Luis A. García-González, Felix Martinez-Rios, Issac P. Tapia-Contreras, Carlos A. Brizuela	Handcrafted versus non-handcrafted (self-supervised) features for the classification of antimicrobial peptides: complementary or redundant?	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Lijuan Yang, Guanghui Yang, Zhi-Tong Bing, Yuan Tian, Liang Huang, Yuzhen Niu, Lei Yang 0021	Accelerating the discovery of anticancer peptides targeting lung and breast cancers with the Wasserstein autoencoder model and PSO algorithm.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
15	Shahin Ramazi, Neda Mohammadi, Abdollah Allahverdi, Elham Khalili, Parviz Abdolmaleki	A review on antimicrobial peptides databases and the computational tools.	Database J. Biol. Databases Curation	2022	DBLP DOI BibTeX RDF
15	Guobang Shi, Xinyue Kang, Fanyi Dong, Yanchao Liu, Ning Zhu, Yuxuan Hu, Hanmei Xu, Xingzhen Lao, Heng Zheng	DRAMP 3.0: an enhanced comprehensive data repository of antimicrobial peptides.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
15	Xiaotong Luo, Yuantai Huang, Huiqin Li, Yihai Luo, Zhixiang Zuo, Jian Ren 0002, Yubin Xie	SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
15	Jhih-Hua Jhong, Lantian Yao, Yuxuan Pang, Zhongyan Li, Chia-Ru Chung, Rulan Wang, Shangfu Li, Wenshuo Li, Mengqi Luo, Renfei Ma, Yuqi Huang, Xiaoning Zhu, Jiahong Zhang, Hexiang Feng, Qifan Cheng, Chunxuan Wang, Kun Xi, Li-Ching Wu, Tzu-Hao Chang, Jorng-Tzong Horng, Lizhe Zhu, Ying-Chih Chiang, Zhuo Wang, Tzong-Yi Lee	dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
15	Ayad R. Abbas, Bashar Saadoon Mahdi, Osamah Younus Fadhil	Breast and Lung Anticancer Peptides Classification Using N-Grams and Ensemble Learning Techniques.	Big Data Cogn. Comput.	2022	DBLP DOI BibTeX RDF
15	Dongya Qin, Weichen Bo, Xin Zheng, Youjin Hao, Bo Li 0097, Jie Zheng 0003, Guizhao Liang	DFBP: a comprehensive database of food-derived bioactive peptides for peptidomics research.	Bioinform.	2022	DBLP DOI BibTeX RDF
15	Huanyu Tao, Xuejun Zhao, Keqiong Zhang, Peicong Lin, Sheng-You Huang	Docking cyclic peptides formed by a disulfide bond through a hierarchical strategy.	Bioinform.	2022	DBLP DOI BibTeX RDF
15	Jianan Li, Keisuke Yanagisawa, Yasushi Yoshikawa, Masahito Ohue, Yutaka Akiyama	Plasma protein binding prediction focusing on residue-level features and circularity of cyclic peptides by deep learning.	Bioinform.	2022	DBLP DOI BibTeX RDF
15	Husen M. Umer, Enrique Audain, Yafeng Zhu, Julianus Pfeuffer, Timo Sachsenberg, Janne Lehtiö, Rui Mamede Branca, Yasset Pérez-Riverol	Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides.	Bioinform.	2022	DBLP DOI BibTeX RDF
15	Yuxuan Pang, Lantian Yao, Jingyi Xu, Zhuo Wang, Tzong-Yi Lee	Integrating transformer and imbalanced multi-label learning to identify antimicrobial peptides and their functional activities.	Bioinform.	2022	DBLP DOI BibTeX RDF
15	Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang 0003, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong, Dong-Qing Wei	A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design.	Nat. Mach. Intell.	2022	DBLP DOI BibTeX RDF
15	Tom Altenburg, Sven H. Giese, Shengbo Wang, Thilo Muth, Bernhard Y. Renard	Ad hoc learning of peptide fragmentation from mass spectra enables an interpretable detection of phosphorylated and cross-linked peptides.	Nat. Mach. Intell.	2022	DBLP DOI BibTeX RDF
15	Peter K. Eastman, Pavan Kumar Behara, David L. Dotson, Raimondas Galvelis, John E. Herr, Josh T. Horton, Yuezhi Mao, John D. Chodera, Benjamin P. Pritchard, Yuanqing Wang, Gianni De Fabritiis, Thomas E. Markland	SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentials.	CoRR	2022	DBLP DOI BibTeX RDF
15	Ehtisham Fazal, Muhammad Sohail Ibrahim, Seongyong Park, Imran Naseem, Abdul Wahab 0002	Anticancer Peptides Classification using Kernel Sparse Representation Classifier.	CoRR	2022	DBLP DOI BibTeX RDF
15	Bonaventure F. P. Dossou, Dianbo Liu, Xu Ji, Moksh Jain, Almer M. van der Sloot, Roger Palou, Michael Tyers, Yoshua Bengio	Graph-Based Active Machine Learning Method for Diverse and Novel Antimicrobial Peptides Generation and Selection.	CoRR	2022	DBLP DOI BibTeX RDF
15	Meng Wang, Chuqi Lei, Jianxin Wang 0001, Yaohang Li, Min Li 0007	TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning.	CoRR	2022	DBLP DOI BibTeX RDF
15	Paula Machado de Araújo, Clícia Grativol	In silico identification of candidate miRNA-encoded Peptides in four Fabaceae species.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF