| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Alexandra Gesine Cauer, Gürkan Yardimci, Jean-Philippe Vert, Nelle Varoquaux, William Stafford Noble |
Inferring Diploid 3D Chromatin Structures from Hi-C Data.  |
WABI  |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Naga Sai Kavya Vaddadi, Rajgopal Srinivasan, Naveen Sivadasan |
Read Mapping on Genome Variation Graphs. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Qi Wang 0038, Ryan A. Leo Elworth, Tian-Rui Liu, Todd J. Treangen |
Faster Pan-Genome Construction for Efficient Differentiation of Naturally Occurring and Engineered Plasmids with Plaster. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Milad Miladi, Martin Raden, Sebastian Will, Rolf Backofen |
Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Jesper Jansson 0001, Konstantinos Mampentzidis, Sandhya T. P. 0001 |
Building a Small and Informative Phylogenetic Supertree. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Kohei Yamada, Zhi-Zhong Chen, Lusheng Wang 0001 |
Better Practical Algorithms for rSPR Distance and Hybridization Number. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Chirag Jain, Haowen Zhang, Alexander T. Dilthey, Srinivas Aluru |
Validating Paired-End Read Alignments in Sequence Graphs. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Jens Stoye |
Finding All Maximal Perfect Haplotype Blocks in Linear Time. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Front Matter, Table of Contents, Preface, Conference Organization. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhen Cao, Jiafan Zhu, Luay Nakhleh |
Empirical Performance of Tree-Based Inference of Phylogenetic Networks. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Hongyi Xin, Mingfu Shao, Carl Kingsford |
Context-Aware Seeds for Read Mapping. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Jakub Truszkowski, Olivier Gascuel, Krister M. Swenson |
Rapidly Computing the Phylogenetic Transfer Index. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Jie Liu 0045, Yuanhao Huang, Ritambhara Singh, Jean-Philippe Vert, William Stafford Noble |
Jointly Embedding Multiple Single-Cell Omics Measurements. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow |
TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander Tiskin |
Bounded-Length Smith-Waterman Alignment. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Roland Wittler |
Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Natalie Sauerwald, Yihang Shen, Carl Kingsford |
Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Roni Zoller, Meirav Zehavi, Michal Ziv-Ukelson |
A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Georgi D. Georgiev, Kevin F. Dodd, Brian Y. Chen |
pClay: A Precise Parallel Algorithm for Comparing Molecular Surfaces. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Yutong Qiu, Cong Ma, Han Xie, Carl Kingsford |
Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem. |
WABI |
2019 |
DBLP DOI BibTeX RDF |
|
| 1 | Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cédric Chauve, Leonid Chindelevitch |
PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Stéphane Chrétien, Christophe Guyeux, Serge Moulin |
l1-Penalised Ordinal Polytomous Regression Estimators with Application to Gene Expression Studies. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Süleyman Cenk Sahinalp |
A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Szymon Majewski, Michal Aleksander Ciach, Michal Startek, Wanda Niemyska, Blazej Miasojedow, Anna Gambin |
The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Riccardo Dondi, Manuel Lafond, Céline Scornavacca |
Reconciling Multiple Genes Trees via Segmental Duplications and Losses. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Mai Alzamel, Lorraine A. K. Ayad, Giulia Bernardini 0001, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone |
Degenerate String Comparison and Applications. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Lavinia Egidi, Felipe A. Louza, Giovanni Manzini, Guilherme P. Telles |
External memory BWT and LCP computation for sequence collections with applications. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin |
Haplotype-aware graph indexes. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Tuukka Norri, Bastien Cazaux, Dmitry Kosolobov, Veli Mäkinen |
Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Barak Sternberg, Roded Sharan |
A Dynamic Algorithm for Network Propagation. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Till Hartmann, Sven Rahmann |
Spalter: A Meta Machine Learning Approach to Distinguish True DNA Variants from Sequencing Artefacts. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Christina Boucher, Travis Gagie, Alan Kuhnle, Giovanni Manzini |
Prefix-Free Parsing for Building Big BWTs. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin D. Muggli, Simon J. Puglisi, Christina Boucher |
A Succinct Solution to Rmap Alignment. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Saugata Basu, Filippo Utro, Laxmi Parida |
Essential Simplices in Persistent Homology and Subtle Admixture Detection. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Front Matter, Table of Contents, Preface, Conference Organization. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Laxmi Parida, Esko Ukkonen (eds.) |
18th International Workshop on Algorithms in Bioinformatics, WABI 2018, August 20-22, 2018, Helsinki, Finland |
WABI |
2018 |
DBLP BibTeX RDF |
|
| 1 | Morteza Chalabi Hajkarim, Eli Upfal, Fabio Vandin |
Differentially Mutated Subnetworks Discovery. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Ryan A. Leo Elworth, Chabrielle Allen, Travis Benedict, Peter Dulworth, Luay Nakhleh |
DGEN: A Test Statistic for Detection of General Introgression Scenarios. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Martin S. Engler, Bertrand Caron, Lourens E. Veen, Daan P. Geerke, Alan E. Mark, Gunnar W. Klau |
Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like Molecules. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Mohammed El-Kebir |
Parsimonious Migration History Problem: Complexity and Algorithms. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Tamal K. Dey, Sayan Mandal |
Protein Classification with Improved Topological Data Analysis. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Nicola Prezza, Nadia Pisanti, Marinella Sciortino, Giovanna Rosone |
Detecting Mutations by eBWT. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Kai Dührkop, Marie Anne Lataretu, W. Timothy J. White, Sebastian Böcker |
Heuristic Algorithms for the Maximum Colorful Subtree Problem. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Yohei M. Rosen, Benedict J. Paten |
An Average-Case Sublinear Exact Li and Stephens Forward Algorithm. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Qiuyi (Richard) Zhang, Satish Rao, Tandy J. Warnow |
New Absolute Fast Converging Phylogeny Estimation Methods with Improved Scalability and Accuracy. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Riku Walve, Pasi Rastas, Leena Salmela |
Kermit: Guided Long Read Assembly using Coloured Overlap Graphs. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Hooman Zabeti, Tamon Stephen, Bonnie Berger, Leonid Chindelevitch |
A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models. |
WABI |
2018 |
DBLP DOI BibTeX RDF |
|
| 1 | Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao 0001, Costas S. Iliopoulos, Manal Mohamed 0001, Solon P. Pissis, Dimitris Polychronopoulos |
Optimal Computation of Overabundant Words. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Anastasiia Abramova, Anton I. Korobeynikov |
Assessing the Significance of Peptide Spectrum Match Scores. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Front Matter, Table of Contents, Preface, List of Authors. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Mohamed K. Gunady, Steffen Cornwell, Stephen M. Mount, Héctor Corrada Bravo |
Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Pijus Simonaitis, Krister M. Swenson |
Finding Local Genome Rearrangements. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth |
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Amir H. Bayegan, Peter Clote |
An IP Algorithm for RNA Folding Trajectories. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Hosna Jabbari, Ian Wark, Carlo Montemagno, Sebastian Will |
Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Nidhi Shah, Stephen F. Altschul, Mihai Pop |
Outlier Detection in BLAST Hits. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Samuele Girotto, Matteo Comin, Cinzia Pizzi |
Fast Spaced Seed Hashing. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Brian Brubach, Jay Ghurye, Mihai Pop, Aravind Srinivasan |
Better Greedy Sequence Clustering with Fast Banded Alignment. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatemeh Almodaresi, Prashant Pandey 0001, Rob Patro |
Rainbowfish: A Succinct Colored de Bruijn Graph Representation. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Bahar Alipanahi, Leena Salmela, Simon J. Puglisi, Martin D. Muggli, Christina Boucher |
Disentangled Long-Read De Bruijn Graphs via Optical Maps. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Chenyue W. Hu, Hanyang Li, Amina A. Qutub |
Shrinkage Clustering: A Fast and Size-Constrained Algorithm for Biomedical Applications. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Sarah A. Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow |
Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Russell Schwartz, Knut Reinert (eds.) |
17th International Workshop on Algorithms in Bioinformatics, WABI 2017, August 21-23, 2017, Boston, MA, USA |
WABI |
2017 |
DBLP BibTeX RDF |
|
| 1 | Sarvesh Nikumbh, Peter Ebert, Nico Pfeifer |
All Fingers Are Not the Same: Handling Variable-Length Sequences in a Discriminative Setting Using Conformal Multi-Instance Kernels. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Jarkko Toivonen, Jussi Taipale, Esko Ukkonen |
Seed-driven Learning of Position Probability Matrices from Large Sequence Sets. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Michal Aleksander Ciach, Anna Muszewska, Pawel Górecki 0001 |
Detecting Locus Acquisition Events in Gene Trees. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Petr Procházka, Jan Holub 0001 |
Byte-Aligned Pattern Matching in Encoded Genomic Sequences. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Md. Shamsuzzoha Bayzid, Tandy J. Warnow |
Gene Tree Parsimony for Incomplete Gene Trees. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Jongkyu Kim, Knut Reinert |
Vaquita: Fast and Accurate Identification of Structural Variation Using Combined Evidence. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Anton Polishko, Md. Abid Hasan, Weihua Pan, Evelien M. Bunnik, Karine G. Le Roch, Stefano Lonardi |
ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Jens Quedenfeld, Sven Rahmann |
Analysis of Min-Hashing for Variant Tolerant DNA Read Mapping. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Cátia Vaz |
Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Nadia El-Mabrouk, Aïda Ouangraoua |
A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Yves Frank, Tomas Hruz, Thomas Tschager, Valentin Venzin |
Improved De Novo Peptide Sequencing using LC Retention Time Information. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Shunfu Mao, Soheil Mohajer, Kannan Ramchandran, David Tse, Sreeram Kannan |
abSNP: RNA-Seq SNP Calling in Repetitive Regions via Abundance Estimation. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Abbas Roayaei Ardakany, Stefano Lonardi |
Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps. |
WABI |
2017 |
DBLP DOI BibTeX RDF |
|
| 1 | Daniel Doerr, Pedro Feijão, Metin Balaban, Cédric Chauve |
The Gene Family-Free Median of Three. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Lianrong Pu, Daming Zhu, Haitao Jiang |
A New Approximation Algorithm for Unsigned Translocation Sorting. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Matthieu David, Guillaume Fertin, Dominique Tessier |
SpecTrees: An Efficient Without a Priori Data Structure for MS/MS Spectra Identification. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexander A. Loboda, Maxim N. Artyomov, Alexey A. Sergushichev |
Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Svend V. Nielsen, Simon Simonsen, Asger Hobolth |
Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley's K-Function or Runs of Homozygosity? |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Brian Brubach |
Further Improvement in Approximating the Maximum Duo-Preservation String Mapping Problem. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond |
Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira |
Copy-Number Evolution Problems: Complexity and Algorithms. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Arnon Benshahar, Vered Chalifa-Caspi, Danny Hermelin, Michal Ziv-Ukelson |
A Biclique Approach to Reference Anchored Gene Blocks and Its Applications to Pathogenicity Islands. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Jay Ghurye, Mihai Pop |
Better Identification of Repeats in Metagenomic Scaffolding. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Marius Erbert, Steffen Rechner, Matthias Müller-Hannemann |
Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Brona Brejová, Askar Gafurov, Dana Pardubská, Michal Sabo, Tomás Vinar |
Isometric Gene Tree Reconciliation Revisited. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Sven Jager, Benjamin Schiller, Thorsten Strufe, Kay Hamacher |
StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Ludovic Gillet, Simon Rösch, Thomas Tschager, Peter Widmayer |
A Better Scoring Model for De Novo Peptide Sequencing: The Symmetric Difference Between Explained and Measured Masses. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao 0001, Costas S. Iliopoulos, Manal Mohamed 0001, Solon P. Pissis, Dimitris Polychronopoulos |
Optimal Computation of Avoided Words. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Diego P. Rubert, Pedro Feijão, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez |
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Christopher Schröder 0002, Sven Rahmann |
A Hybrid Parameter Estimation Algorithm for Beta Mixtures and Applications to Methylation State Classification. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Adam M. Novak, Erik Garrison, Benedict Paten |
A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Anna Bomersbach, Marco Chiarandini, Fabio Vandin |
An Efficient Branch and Cut Algorithm to Find Frequently Mutated Subnetworks in Cancer. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford |
Compact Universal k-mer Hitting Sets. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Yun Deng, David Fernández-Baca |
Fast Compatibility Testing for Phylogenies with Nested Taxa. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Guillaume Fertin, Géraldine Jean, Eric Tannier |
Genome Rearrangements on Both Gene Order and Intergenic Regions. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Dan F. DeBlasio, John D. Kececioglu |
Predicting Core Columns of Protein Multiple Sequence Alignments for Improved Parameter Advising. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
| 1 | Emilie Renard, Samuel Branders, Pierre-Antoine Absil |
Independent Component Analysis to Remove Batch Effects from Merged Microarray Datasets. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
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