Search results for "biology"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
36	David L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln	The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang	Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	David Kulp, Manjunatha Jagalur	Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Haseong Kim, Jae K. Lee, Taesung Park	Improvement of Computing Times in Boolean Networks Using Chi-square Tests.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp	Improved Duplication Models for Proteome Network Evolution.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker	Comparison of Protein-Protein Interaction Confidence Assignment Schemes.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
36	Patrick Lambrix	Ontologies in Bioinformatics and Systems Biology.	Artificial Intelligence Methods And Tools For Systems Biology	2004	DBLP DOI BibTeX RDF
36	K. Bretonnel Cohen, Lawrence Hunter	Natural Language Processing and Systems Biology.	Artificial Intelligence Methods And Tools For Systems Biology	2004	DBLP DOI BibTeX RDF
36	Walter M. Fitch	An introduction to molecular biology for mathematicians and computer programmers.	Mathematical Support for Molecular Biology	1998	DBLP DOI BibTeX RDF
36	Alberto Apostolico, Raffaele Giancarlo	Sequence alignment in molecular biology.	Mathematical Support for Molecular Biology	1998	DBLP DOI BibTeX RDF
35	François Bry, Peer Kröger	Bioinformatics Databases: State of the Art and Research Perspectives.	ADBIS	2003	DBLP DOI BibTeX RDF
34	Florian Echtler, Maximilian Häußler, Gudrun Klinker	BioTISCH: the interactive molecular biology lab bench.	CHI Extended Abstracts	2010	DBLP DOI BibTeX RDF	lab bench, user interface, molecular biology, interactive table
34	Nawwaf N. Kharma, Luc Varin	Synthetic biology I.	GECCO (Companion)	2009	DBLP DOI BibTeX RDF	synthetic biology, biological computing
34	Tomaz Amon	Web Virtual Reality Edutainment in Biology and Physics.	Edutainment	2006	DBLP DOI BibTeX RDF	e-textbook, visualization, virtual reality, animations, animating, computer animation, edutainment, web3d, biology
34	Hong Qin 0003	Teaching computational thinking through bioinformatics to biology students.	SIGCSE	2009	DBLP DOI BibTeX RDF	bioinformatics, computational thinking, life sciences
34	Melissa Freedenberg, Chanchala Kaddi, Chang F. Quo, May D. Wang	Review of Systems Biology Simulation Tools for Translational Research.	BIBE	2007	DBLP DOI BibTeX RDF
34	Michael Q. Zhang	Computational Molecular Biology of Genome Expression and Regulation.	PReMI	2005	DBLP DOI BibTeX RDF
34	Anthony Finkelstein, James Hetherington, Linzhong Li, Ofer Margoninski, Peter Saffrey, Robert M. Seymour, Anne Warner	Computational Challenges of Systems Biology.	Computer	2004	DBLP DOI BibTeX RDF
34	Dimitris Gavrilis, Evangelos Dermatas	Part-of-Speech Tagging in Molecular Biology Scientific Abstracts Using Morphological and Contextual Statistical Information.	SETN	2004	DBLP DOI BibTeX RDF	HMM, Natural Language Processing, Part-of-Speech Tagging
34	Brian Sturgeon, Damian McCourt, John Cowper, Fiona Palmer, Sally I. McClean, Werner Dubitzky	Can the Grid Help to Solve the Data Integration Problems in Molecular Biology?	CCGRID	2003	DBLP DOI BibTeX RDF
34	Esko Ukkonen	Toward Complete Genome Data Mining in Computational Biology.	SWAT	2000	DBLP DOI BibTeX RDF
33	Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher James Langmead	Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology.	RECOMB	2009	DBLP DOI BibTeX RDF	Acute Illness, Verification, Uncertainty, Systems Biology, Nonlinear Dynamical Systems
33	Craig A. Stewart, Matthias S. Müller, Malinda Lingwall	Progress Towards Petascale Applications in Biology: Status in 2006.	Euro-Par Workshops	2006	DBLP DOI BibTeX RDF	grand challenge problem, peak theoretical capacity, petabytes, petaflops, high performance computing, Computational biology, life sciences, petascale computing
32	Dieter Oesterhelt	Systems Biology of Halophilic Archaea.	CMSB	2008	DBLP DOI BibTeX RDF
32	Bruno W. S. Sobral	Cyberinfrastructure for PathoSystems Biology.	BSB	2005	DBLP DOI BibTeX RDF
32	Manuel Corpas	Integrating Simulation Packages via Systems Biology Mark-Up Language.	CMSB	2003	DBLP DOI BibTeX RDF
32	Olaf Langmack	How to Solve Semantic Puzzles of Systems Biology.	CMSB	2003	DBLP DOI BibTeX RDF
32	Magali Roux-Rouquié, Leroy E. Hood, Sandrine Imbeaud, Charles Auffray	Issues in Computational Methods for Functional Genomics and Systems Biology.	CMSB	2003	DBLP DOI BibTeX RDF
31	Maria Luisa Guerriero	Qualitative and Quantitative Analysis of a Bio-PEPA Model of the Gp130/JAK/STAT Signalling Pathway.	Trans. Comp. Sys. Biology	2009	DBLP DOI BibTeX RDF
31	Gerald Schaefer, Tomoharu Nakashima, Hisao Ishibuchi	Gene Expression Analysis by Fuzzy and Hybrid Fuzzy Classification.	Fuzzy Systems in Bioinformatics and Computational Biology	2009	DBLP DOI BibTeX RDF
31	Stan Franklin, Michael H. Ferkin	Using Broad Cognitive Models to Apply Computational Intelligence to Animal Cognition.	Applications of Computational Intelligence in Biology	2008	DBLP DOI BibTeX RDF
31	Laurence Calzone, Nathalie Chabrier-Rivier, François Fages, Sylvain Soliman	Machine Learning Biochemical Networks from Temporal Logic Properties.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
31	Céline Kuttler, Joachim Niehren	Gene Regulation in the Pi Calculus: Simulating Cooperativity at the Lambda Switch.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
31	Robin Milner	Scientific Foundation for Global Computing.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF
31	Guillaume Blin, Guillaume Fertin, Romeo Rizzi, Stéphane Vialette	What Makes the Arc-Preserving Subsequence Problem Hard?	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF	Arc-Preserving Subsequence problem, Computational complexity, RNA structures
31	Jürgen Zobeley, Dirk Lebiedz, Julia Kammerer, Anton Ishmurzin, Ursula Kummer	A New Time-Dependent Complexity Reduction Method for Biochemical Systems.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF
31	Mark d'Inverno, Jane Prophet	Multidisciplinary Investigation into Adult Stem Cell Behavior.	Trans. Comp. Sys. Biology	2005	DBLP DOI BibTeX RDF	Novel tools applied to biological systems, self-repairing and self-replicating systems, new technologies and methods, interdisciplinary research and collaboration, cellular automata, self-organizing, art
31	Huijun Wang, An Chi, Xudong Qiao	Understand Compound Mechanism of Action at a System Biology Scale through Chemical Biology Data Management and Analysis.	BCB	2018	DBLP DOI BibTeX RDF
31	Kevin S. Bonham, Melanie I. Stefan	Women are underrepresented in computational biology: An analysis of the scholarly literature in biology, computer science and computational biology.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
31	Adrien Basso-Blandin	Gubs, un langage de description comportementale pour la biologie de synthèse : Conception d'un langage dédié à la conception de fonctions biologiques de synthèse par compilation de spécifications comportementales. (Gubs, a behavioral description language for synthetic biology / Gubs, a behavioral description language for synthetic biology : Conception of a domain specific language dedicated to synthetic biology using behavioral specifications compilation).		2014	RDF
31	Thomas Abeel, Jeroen de Ridder, Lucia Peixoto	Highlights from the 5th International Society for Computational Biology Student Council Symposium at the 17th Annual International Conference on Intelligent Systems for Molecular Biology and the 8th European Conference on Computational Biology.	BMC Bioinform.	2009	DBLP BibTeX RDF
30	James Smaldon, Natalio Krasnogor, Cameron Alexander, Marian Gheorghe 0001	Liposome logic.	GECCO	2009	DBLP DOI BibTeX RDF	dissipative particle dynamics, gpu computing, liposome, systems biology, cuda, synthetic biology, biomolecular computing
30	Federica Ciocchetta, Corrado Priami, Paola Quaglia	An Automatic Translation of SBML into Beta-Binders.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	modeling, Process algebras, systems biology, biological systems, translation tool, Systems Biology Markup Language (SBML)
30	Ranjit Randhawa, Clifford A. Shaffer, John J. Tyson	Fusing and composing macromolecular regulatory network models.	SpringSim (2)	2007	DBLP BibTeX RDF	pathway models, computational biology, systems biology markup language (SBML)
30	Janet Wiles, Nicholas Geard, James E. M. Watson, Kai Willadsen, John S. Mattick, Daniel R. Bradley, Jennifer Hallinan	There's more to a model than code: understanding and formalizing in silico modeling experience.	GECCO Workshops	2005	DBLP DOI BibTeX RDF	in silico biology, artificial genomes, complex systems biology, complex systems modeling, complex systems patterns, visualization, design patterns, genetic regulatory networks
30	Alexandre G. de Brevern, Serge A. Hazout	Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties.	SPIRE	2000	DBLP DOI BibTeX RDF	Hybrid Protein Model, protein 3D-structure, physicochemical properties, protein 1D-sequence, structural alphabet, unsupervised classifier, protein blocks, sequence information, amino acid residues, pattern matching, fuzzy model, biology computing, Bayesian approach, structural biology
30	Carlos García-Martínez, Claudio Lima, Jamie Twycross, Natalio Krasnogor, Manuel Lozano 0001	P system model optimisation by means of evolutionary based search algorithms.	GECCO	2010	DBLP DOI BibTeX RDF	executable biology, real-valued parameter optimisation, evolutionary algorithms, p systems
30	Heinz Luediger	Is Self-organization a Rational Expectation?.	Complex (1)	2009	DBLP DOI BibTeX RDF	biology-inspired engineering, reductionism, holism, complexity, perception, knowledge, emergence, mind
29	Shankar Subramaniam	Challenges in Biological Data Integration in the Post-genome Sequence Era.	DILS	2005	DBLP DOI BibTeX RDF
28	Zachary Dodds, Ran Libeskind-Hadas, Eliot C. Bush	When CS 1 is biology 1: crossdisciplinary collaboration as CS context.	ITiCSE	2010	DBLP DOI BibTeX RDF	biology 1, contextual peers, contextualized CS, CS 1
28	Naren Sundaravaradan, K. S. M. Tozammel Hossain, Vandana Sreedharan, Douglas J. Slotta, John Paul C. Vergara, Lenwood S. Heath, Naren Ramakrishnan	Extracting temporal signatures for comprehending systems biology models.	KDD	2010	DBLP DOI BibTeX RDF	rank-order spaces, temporal signatures, feature selection, systems biology, biological networks
28	Thorsten Bernholt, Friedrich Eisenbrand, Thomas Hofmeister	Constrained Minkowski Sums: A Geometric Framework for Solving Interval Problems in Computational Biology Efficiently.	Discret. Comput. Geom.	2009	DBLP DOI BibTeX RDF	Interval problems, Convex hulls, Computational biology, Minkowski sums
28	Walter Fontana	Systems biology, models, and concurrency.	POPL	2008	DBLP DOI BibTeX RDF	kappa, models, systems biology
28	Carolyn L. Talcott	Pathway Logic.	SFM	2008	DBLP DOI BibTeX RDF	Symbolic systems biology, Pathway Logic, Epidermal Growth Factor signaling, rewriting logic, signal transduction
28	D. Dutta Majumder, Christian Ulrichs, Debosmita Majumder, Inga Mewis, Ashoke Ranjan Thakur, R. L. Brahmachary, Rajat Banerjee, Ayesha Rahman, Nitai Debnath, Dipankar Seth, Sumistha Das, Indrani Roy, Amrita Ghosh, Prity Sagar, Carsten Schulz, Nguyen Quang Linh, Arunava Goswami	Current Status and Future Trends of Nanoscale Technology and Its Impact on Modern Computing, Biology, Medicine and Agricultural Biotechnology.	ICCTA	2007	DBLP DOI BibTeX RDF	hydrophobic nanosilica, lipophilic nanosilica, Nanoscience, nanosilica, machine learning, pervasive computing, computational biology, genomics, reversible computing, Agriculture, cancer, HIV, cybernetics, quantum mechanics, consciousness, Alzheimer's disease, neuronal network, biotechnology, metabolomics, malaria
28	Jed Dube, Sarah Carrier, Jane Greenberg	DRIADE: a data repository for evolutionary biology.	JCDL	2007	DBLP DOI BibTeX RDF	digital data repository, evolutionary biology, cyberinfrastructure, scientific data
28	Thorsten Bernholt, Friedrich Eisenbrand, Thomas Hofmeister	A geometric framework for solving subsequence problems in computational biology efficiently.	SCG	2007	DBLP DOI BibTeX RDF	quasiconvex functions, subsequence problems, computational biology, Minkowski sums
28	Mark R. Grant, C. Anthony Hunt	An In Silico Analogue of In Vitro Systems Used to Study Epithelial Cell Morphogenesis.	CMSB	2006	DBLP DOI BibTeX RDF	cystogenesis, epithelial, simulation, model, complex systems, systems biology, morphogenesis, Agent-based, synthetic
28	Jianlin Cheng, Lucas Scharenbroich, Pierre Baldi, Eric Mjolsness	Sigmoid: A Software Infrastructure for Pathway Bioinformatics and Systems Biology.	IEEE Intell. Syst.	2005	DBLP DOI BibTeX RDF	intelligent middleware, generative software, Sigmoid, Cellerator, UML, bioinformatics, systems biology, computer algebra, pathway, cell modeling
28	Jian He, Masha Sosonkina, Clifford A. Shaffer, John J. Tyson, Layne T. Watson, Jason W. Zwolak	A Hierarchical Parallel Scheme for Global Parameter Estimation in Systems Biology.	IPDPS	2004	DBLP DOI BibTeX RDF	DIRECT (DIviding RECTangles) algorithm, GPSHMEM (generalized portable shared memory), parallel and distributed data structures, global optimization, parameter estimation, systems biology, load balancing strategy, multidisciplinary design optimization
28	B. F. Lu, K. T. Lim, J. M. Zheng, Y. Y. Cai	Learning molecular biology by VR playing.	VRCAI	2004	DBLP DOI BibTeX RDF	VR, learning, computer game, playing, biology
28	Monika Rauch Henzinger, Valerie King, Tandy J. Warnow	Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology.	Algorithmica	1999	DBLP DOI BibTeX RDF	Evolutionary biology, Theory of databases, Algorithms, Data structures
28	Alexander Bockmayr	Logic-Based Modeling in Systems Biology.	LPNMR	2009	DBLP DOI BibTeX RDF
28	Alfonso Valencia	Text mining in genomics and systems biology.	DTMBIO	2008	DBLP DOI BibTeX RDF	text mining
28	Andrei N. Lupas	At the Origin of Life: How Did Folded Proteins Evolve?	RECOMB	2008	DBLP DOI BibTeX RDF
28	Laurence Loewe, Jane Hillston	The Distribution of Mutational Effects on Fitness in a Simple Circadian Clock.	CMSB	2008	DBLP DOI BibTeX RDF
28	William W. Edmonson, Senanu Ocloo, Cranos Williams, Winser E. Alexander	The Use of Interval Methods in Signal Processing and Control for Systems Biology.	FOCI	2007	DBLP DOI BibTeX RDF
28	Michael I. Jordan	Statistical Machine Learning and Computational Biology.	BIBM	2007	DBLP DOI BibTeX RDF
28	Herbert M. Sauro	Innovation in software for systems biology: is there any?	WSC	2006	DBLP DOI BibTeX RDF
28	Frank T. Bergmann, Herbert M. Sauro	SBW - a modular framework for systems biology.	WSC	2006	DBLP DOI BibTeX RDF
28	Yutao Ma, Yonghong Peng	Co-expression Gene Discovery from Microarray for Integrative Systems Biology.	ADMA	2006	DBLP DOI BibTeX RDF
28	Francesc Rosselló, Gabriel Valiente	Graph Transformation in Molecular Biology.	Formal Methods in Software and Systems Modeling	2005	DBLP DOI BibTeX RDF
28	Yun Zhang 0013, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova	Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology.	SC	2005	DBLP DOI BibTeX RDF
28	Pengcheng Fu	Systems biology: new frontier for system scientists and control engineers.	ICARCV	2004	DBLP DOI BibTeX RDF
28	Chunxi Chen, Bertil Schmidt	Performance analysis of computational biology applications on hierarchical Grid systems.	CCGRID	2004	DBLP DOI BibTeX RDF
28	Isabelle Bichindaritz	Mémoire: Case Based Reasoning Meets the Semantic Web in Biology and Medicine.	ECCBR	2004	DBLP DOI BibTeX RDF
28	Andrea Elaina Grimes, Robert P. Futrelle	Text Pattern Visualization for analysis of biology full text and captions.	CSB	2003	DBLP DOI BibTeX RDF
28	Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan	Challenges for Intelligent Systems in Biology.	IEEE Intell. Syst.	2001	DBLP DOI BibTeX RDF
28	Richard H. Lathrop	Guest Editor's Introduction-Intelligent Systems in Biology: Why the Excitement?	IEEE Intell. Syst.	2001	DBLP DOI BibTeX RDF
28	George M. Church	Hunger for new technologies, metrics, and spatiotemporal models in functional genomic (abstract only).	RECOMB	2001	DBLP DOI BibTeX RDF
28	Thomas Lengauer	Computational Biology - Algorithms and More.	ESA	2000	DBLP DOI BibTeX RDF
27	John K. Heath	The Equivalence between Biology and Computation.	CMSB	2009	DBLP DOI BibTeX RDF
27	Adelinde M. Uhrmacher, Jan Himmelspach, Matthias Jeschke, Mathias John, Stefan Leye, Carsten Maus, Mathias Röhl, Roland Ewald	One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II.	FMSB	2008	DBLP DOI BibTeX RDF
27	Werner Sandmann, Verena Wolf	Computational Probability for Systems Biology.	FMSB	2008	DBLP DOI BibTeX RDF	Structured Model Representation, Markov Chains, Stochastic Modeling, Numerical Analysis, Biological Networks
27	François Fages, Sylvain Soliman	Formal Cell Biology in Biocham.	SFM	2008	DBLP DOI BibTeX RDF
27	Federica Ciocchetta, Jane Hillston	Process Algebras in Systems Biology.	SFM	2008	DBLP DOI BibTeX RDF
27	Luca Bortolussi, Alberto Policriti	Hybrid Systems and Biology.	SFM	2008	DBLP DOI BibTeX RDF
27	Thomas Sturm 0001, Andreas Weber 0004	Investigating Generic Methods to Solve Hopf Bifurcation Problems in Algebraic Biology.	AB	2008	DBLP DOI BibTeX RDF
27	Michael S. Waterman	Stan Ulam and Computational Biology.	RECOMB	2006	DBLP DOI BibTeX RDF
27	Sarah J. Aerni, Eleazar Eskin	10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB).	RECOMB	2006	DBLP DOI BibTeX RDF
27	James J. Collins	Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology.	RECOMB	2005	DBLP DOI BibTeX RDF
27	Eric S. Lander	Biology as Information.	RECOMB	2005	DBLP DOI BibTeX RDF
27	Elizabeth A. Winzeler, Karine G. Le Roch, Yingyao Zhou, Peter L. Blair, Muni Grainger, J. Kathleen Moch, J. David Haynes, Patricia De la Vega, Anthony A. Holder, Serge Batalov, Daniel J. Carucci	Systems biology and malaria.	RECOMB	2004	DBLP DOI BibTeX RDF
27	Florencio Pazos, David Guijas, Manuel J. Gómez, Almudena Trigo, Victor de Lorenzo, Alfonso Valencia	The Biodegradation Network, a New Scenario for Computational Systems Biology Research.	CMSB	2004	DBLP DOI BibTeX RDF
27	Pierpaolo Degano, Corrado Priami	Enhanced Operational Semantics in Systems Biology.	CMSB	2003	DBLP DOI BibTeX RDF
27	Lucian Prodan, Gianluca Tempesti, Daniel Mange, André Stauffer	Biology Meets Electronics: The Path to a Bio-inspired FPGA.	ICES	2000	DBLP DOI BibTeX RDF
25	Chiara Zucco	Multiple Learners Combination: Stacking.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
25	Gianluigi Greco, Marco Manna, Francesco Ricca	Ontology: Introduction.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
25	Swarup Roy, Hazel N. Manners, Ahed Elmsallati, Jugal K. Kalita	Alignment of Protein-Protein Interaction Networks.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF
25	Michele Fratello, Roberto Tagliaferri	Decision Trees and Random Forests.	Encyclopedia of Bioinformatics and Computational Biology (1)	2019	DBLP DOI BibTeX RDF