Search results for "i-motif"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
37	Jihye Kim, Sihui Zhao, Steffen Heber	Finding association rules of cis-regulatory elements involved in alternative splicing.	ACM Southeast Regional Conference	2007	DBLP DOI BibTeX RDF	sequence motif, splicing regulatory elements, association rule mining, alternative splicing
37	Jin Chen 0012, Wynne Hsu, Mong-Li Lee, See-Kiong Ng	NeMoFinder: dissecting genome-wide protein-protein interactions with meso-scale network motifs.	KDD	2006	DBLP DOI BibTeX RDF	graph mining, network motif, protein-protein interaction network
37	Darya Chudova, Padhraic Smyth	Analysis of Pattern Discovery in Sequences Using a Bayes Error Framework.	Data Min. Knowl. Discov.	2003	DBLP DOI BibTeX RDF	Hidden Markov model, motif discovery, Bayes error rate
37	Ahmad Aljamali, Ebad Banissi	Normalisation and Exploration Design Method of Islamic Geometric Patterns.	GMAG	2003	DBLP DOI BibTeX RDF	Sub-Motif Grid, Normalisation, Formulation
33	Roberto Grossi, Andrea Pietracaprina, Nadia Pisanti, Geppino Pucci, Eli Upfal, Fabio Vandin	MADMX: A Novel Strategy for Maximal Dense Motif Extraction.	WABI	2009	DBLP DOI BibTeX RDF
33	Christina Boucher, Daniel G. Brown 0001	Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding.	BICoB	2009	DBLP DOI BibTeX RDF
33	John Hawkins, Timothy L. Bailey	The Statistical Power of Phylogenetic Motif Models.	RECOMB	2008	DBLP DOI BibTeX RDF
33	William O. Wilson, Phil Birkin, Uwe Aickelin	Motif Detection Inspired by Immune Memory.	ICARIS	2007	DBLP DOI BibTeX RDF
33	Michael A. Lones, Andy M. Tyrrell	A co-evolutionary framework for regulatory motif discovery.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
33	Christina Boucher, Daniel G. Brown 0001, Paul Church	A Graph Clustering Approach to Weak Motif Recognition.	WABI	2007	DBLP DOI BibTeX RDF
33	Samuel A. Andersson, Jens Lagergren	Motif Yggdrasil: Sampling from a Tree Mixture Model.	RECOMB	2006	DBLP DOI BibTeX RDF
33	Carl Kingsford, Elena Zaslavsky, Mona Singh 0001	A Compact Mathematical Programming Formulation for DNA Motif Finding.	CPM	2006	DBLP DOI BibTeX RDF
33	Janina Reeder, Robert Giegerich	A graphical programming system for molecular motif search.	GPCE	2006	DBLP DOI BibTeX RDF	dynamic programming, RNA structure
33	Linyong Mao, W. Jim Zheng	Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF
33	Geir Kjetil Sandve, Finn Drabløs	Generalized Composite Motif Discovery.	KES (3)	2005	DBLP DOI BibTeX RDF
33	Jingyi Yang, Jitender S. Deogun, Zhaohui Sun	A New Scheme for Protein Sequence Motif Extraction.	HICSS	2005	DBLP DOI BibTeX RDF
33	Chang Wang 0001, Stephen D. Scott 0001	New kernels for protein structural motif discovery and function classification.	ICML	2005	DBLP DOI BibTeX RDF
33	Natalia Polouliakh, Michiko Konno, Paul Horton, Kenta Nakai	Parameter Landscape Analysis for Common Motif Discovery Programs.	Regulatory Genomics	2004	DBLP DOI BibTeX RDF
33	Kitsana Waiyamai, Peera Liewlom, Thanapat Kangkachit, Thanawin Rakthanmanon	Concept Lattice-Based Mutation Control for Reactive Motifs Discovery.	PAKDD	2008	DBLP DOI BibTeX RDF	mutation control, sequence motif, reactive motif, enzyme function prediction, catalytic site, concept lattice, binding site
33	Laurent Marsan, Marie-France Sagot	Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification.	RECOMB	2000	DBLP DOI BibTeX RDF	motif extraction, model, consensus, suffix tree, promoter, structured motif
31	Christopher J. Friedline, Xueping Zhang, Zendra E. Zehner, Zhongming Zhao	FindSUMO: A PSSM-Based Method for Sumoylation Site Prediction.	ICIC (2)	2008	DBLP DOI BibTeX RDF	SUMO, sumoylation, PSSM, position-specific scoring matrix
31	Qian Gunqun, Zhang Lin, Zhang Li	Applying Complex Network Method to Software Clustering.	CSSE (2)	2008	DBLP DOI BibTeX RDF
31	Yung-fu Chen, Yung-Kuan Chan, Guo-Uei Chang, Meng-Chi Tsao, Yu-Jhuang Syu, Chuen-Horng Lin	Image Retrieval Using Modified Color Variation Co-occurrence Matrix.	IEA/AIE	2008	DBLP DOI BibTeX RDF
31	Tao Jiang, Yucai Feng, Bin Zhang, Jie Shi, Yuanzhen Wang	Finding Motifs of Financial Data Streams in Real Time.	ISICA	2008	DBLP DOI BibTeX RDF
31	Sihui Zhao, Jihye Kim, Steffen Heber	Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing.	BIBE	2007	DBLP DOI BibTeX RDF
31	Jianbo Qian, Shuai Cheng Li 0001, Dongbo Bu, Ming Li 0001, Jinbo Xu	Finding Compact Structural Motifs.	CPM	2007	DBLP DOI BibTeX RDF
31	Michael R. Fellows, Guillaume Fertin, Danny Hermelin, Stéphane Vialette	Sharp Tractability Borderlines for Finding Connected Motifs in Vertex-Colored Graphs.	ICALP	2007	DBLP DOI BibTeX RDF
31	Chirag Nepal, Kyungsook Han	Analysis of HCV Envelope Proteins Interacting with Human Proteins.	FBIT	2007	DBLP DOI BibTeX RDF
31	Zhong Huang, Yun Li, Xiaohua Hu 0001	Anti-parallel Coiled Coils Structure Prediction by Support Vector Machine Classification.	Trans. Comp. Sys. Biology	2006	DBLP DOI BibTeX RDF	coiled coil, SOCKET algorithm, protein sequence data, SVM
31	Xiaolei Li 0001, Jiawei Han 0001, Sangkyum Kim	Motion-Alert: Automatic Anomaly Detection in Massive Moving Objects.	ISI	2006	DBLP DOI BibTeX RDF
31	Chen-Ming Hsu, Chien-Yu Chen 0001, Ching-Chi Hsu, Baw-Jhiune Liu	Efficient Discovery of Structural Motifs from Protein Sequences with Combination of Flexible Intra- and Inter-block Gap Constraints.	PAKDD	2006	DBLP DOI BibTeX RDF
31	Anshul Kundaje, Manuel Middendorf, Feng Gao, Chris Wiggins 0001, Christina S. Leslie	Combining Sequence and Time Series Expression Data to Learn Transcriptional Modules.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	clustering, heterogeneous data, Gene regulation
31	Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot	Bases of Motifs for Generating Repeated Patterns with Wild Cards.	IEEE ACM Trans. Comput. Biol. Bioinform.	2005	DBLP DOI BibTeX RDF	Motifs basis, repeated motifs
31	Jinyan Li 0001, Haiquan Li	Using Fixed Point Theorems to Model the Binding in Protein-Protein Interactions.	IEEE Trans. Knowl. Data Eng.	2005	DBLP DOI BibTeX RDF
31	Guandong Wang, Weixiong Zhang	Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements.	Systems Biology and Regulatory Genomics	2005	DBLP DOI BibTeX RDF
31	Zhong Huang, Yun Li, Xiaohua Hu 0001	SVM Classification to Predict Two Stranded Anti-parallel Coiled Coils based on Protein Sequence Data.	ICCSA (3)	2005	DBLP DOI BibTeX RDF	coiled coil, SOCKET algorithm, protein sequence data, SVM
31	Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot	Reaction Motifs in Metabolic Networks.	WABI	2005	DBLP DOI BibTeX RDF
31	Zheng Liu 0001, Jeffrey Xu Yu, Xuemin Lin 0001, Hongjun Lu, Wei Wang 0011	Locating Motifs in Time-Series Data.	PAKDD	2005	DBLP DOI BibTeX RDF
31	Je-Gun Joung, Sok June Oh, Byoung-Tak Zhang	Searching Transcriptional Modules Using Evolutionary Algorithms.	PPSN	2004	DBLP DOI BibTeX RDF
31	Alberto Apostolico, Matteo Comin, Laxmi Parida	Motifs in Ziv-Lempel-Welch Clef.	Data Compression Conference	2004	DBLP DOI BibTeX RDF
31	Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot	Efficient Extraction of Structured Motifs Using Box-Links.	SPIRE	2004	DBLP DOI BibTeX RDF
31	Daniel Howard 0001, Karl Benson	Promoter Prediction with a GP-Automaton.	EvoWorkshops	2003	DBLP DOI BibTeX RDF
31	Yuh-Jyh Hu	Biological Sequence Data Mining.	PKDD	2001	DBLP DOI BibTeX RDF
31	Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau	A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes.	RECOMB	2001	DBLP DOI BibTeX RDF
29	Francesca Cordero, Alessia Visconti, Marco Botta	A new protein motif extraction framework based on constrained co-clustering.	SAC	2009	DBLP DOI BibTeX RDF	constrained co-clustering, protein motif, pattern discovery
29	Xiaoxi Du, Ruoming Jin, Liang Ding, Victor E. Lee, John H. Thornton Jr.	Migration motif: a spatial - temporal pattern mining approach for financial markets.	KDD	2009	DBLP DOI BibTeX RDF	financial data mining, migration motif, spatial-temporal pattern mining, trajectory mining, risk factor
29	Matthias Zytnicki, Christine Gaspin, Thomas Schiex	DARN! A Weighted Constraint Solver for RNA Motif Localization.	Constraints An Int. J.	2008	DBLP DOI BibTeX RDF	DARN, RNA motif localization, ncRNA
29	Dongsheng Che, Yinglei Song, Khaled Rasheed	MDGA: motif discovery using a genetic algorithm.	GECCO	2005	DBLP DOI BibTeX RDF	genetic algorithms, transcription factor, motif finding
29	Matthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen	Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils.	RECOMB	2004	DBLP DOI BibTeX RDF	beta structures, beta trefoils, motif recognition, rotamer libraries, threading, protein structure prediction
29	Manolis Kamvysselis, Nick Patterson, Bruce Birren, Bonnie Berger, Eric S. Lander	Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species.	RECOMB	2003	DBLP DOI BibTeX RDF	genome annotation, regulatory motif discovery, computational biology, comparative genomics
29	Christopher Byrnes	Porting Applications Between Two Commercial Ada/Motif Bindings.	TRI-Ada	1993	DBLP DOI BibTeX RDF	OSF/Motif, Ada
27	Akio Nishikawa, Satsuki Yaegashi, Fumiaki Tanaka, Kazumasa Ohtake, Masami Hagiya	Multi-fueled approach to DNA nano-robotics.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Azobenzene, DNA Nano-robotics, i-Motif, Light fuel, Multi-fueled approach, pH Fuel, Thermal fuel
27	Eilon Sharon, Eran Segal	A Feature-Based Approach to Modeling Protein-DNA Interactions.	RECOMB	2007	DBLP DOI BibTeX RDF	DNA sequence motifs, motif finder, probabilistic graphical models, Markov networks, transcription factor binding sites
27	Akio Nishikawa, Satsuki Yaegashi, Kazumasa Ohtake, Masami Hagiya	Multi-fueled Approach to DNA Nano-Robotics.	DNA	2007	DBLP DOI BibTeX RDF	DNA nano-robotics, multi-fueled approach, thermal fuel, pH fuel, light fuel, azobenzene, i-motif
27	Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee	TFBS identification by position- and consensus-led genetic algorithm with local filtering.	GECCO	2007	DBLP DOI BibTeX RDF	TFBS identification, genetic algorithm, local search, consensus, motif discovery, transcription factors
27	Sebastian Wernicke 0001	Efficient Detection of Network Motifs.	IEEE ACM Trans. Comput. Biol. Bioinform.	2006	DBLP DOI BibTeX RDF	Network motif detection algorithm, subgraph enumeration, subgraph sampling, subgraph concentration in random graphs
27	Kuan Yang, Youping Deng, Chaoyang Zhang, Mohamed O. Elasri	Identification of New Members of Hydrophobin Family Using Primary Structure Analysis.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF	Hydrophobin, Batch BLAST, Motif finding, MEME
27	Liang Chen, Hongyu Zhao	Integrating mRNA Decay Information into Co-Regulation Study.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	mRNA decay rate, transcription rate, transcript amount, DNA binding motif, microarray
27	Robin Gras, David Hernández, Patricia Hernandez, Nadine Zangger, Yoann Mescam, Julien Frey, Olivier Martin 0002, Jacques Nicolas, Ron D. Appel	Cooperative Metaheuristics for Exploring Proteomic Data.	Artif. Intell. Rev.	2003	DBLP DOI BibTeX RDF	cooperative metaheuristics, motif inference, evolutionary algorithm, swarm intelligence, multiple sequence alignment, proteomics, protein identification
26	Hrishikesh Dhondge	Structural characterization of RNA binding to RNA recognition motif (RRM) domains using data integration, 3D modeling and molecular dynamic simulation. (Caractérisation structurale de la liaison de l'ARN aux domaines à Motif de Reconnaissance de l'ARN (RRM) à l'aide de l'intégration de données, la modélisation 3D et la simulation dynamique moléculaire).		2023	RDF
26	Takayasu Fushimi, Kazumi Saito, Hiroshi Motoda	Efficient computation of expected motif frequency in uncertain graphs by exploiting possible world marginalization and motif transition.	Soc. Netw. Anal. Min.	2022	DBLP DOI BibTeX RDF
26	Wooyoung Kim, Zachary Arthur Brader	NemoLib: Network Motif Libraries for Network Motif Detection and Analysis.	ISBRA	2020	DBLP DOI BibTeX RDF
26	Hamed Khakzad, Johan Malmström, Lars Malmström	Greedy de novo motif discovery to construct motif repositories for bacterial proteomes.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
26	Yang Li 0089, Pengyu Ni, Shaoqiang Zhang, Guojun Li, Zhengchang Su	ProSampler: an ultrafast and accurate motif finder in large ChIP-seq datasets for combinatory motif discovery.	Bioinform.	2019	DBLP DOI BibTeX RDF
26	Elangovan Ramanujam, S. Padmavathi 0001	A Review on Time Series Motif Discovery Techniques an Application to ECG Signal Classification: ECG Signal Classification Using Time Series Motif Discovery Techniques.	Int. J. Artif. Intell. Mach. Learn.	2019	DBLP DOI BibTeX RDF
26	Preston Mar, Wooyoung Kim	NemoMapPy: Motif-centric network motif search on a web.	BIBM	2019	DBLP DOI BibTeX RDF
26	Ezgi Deniz Ülker	Solving DNA motif discovery problem using improved Clonal selection algorithm with tournament selection operator: DNA motif discovery with Clonal selection algorithm.	AISS	2019	DBLP DOI BibTeX RDF
26	Elisha D. Roberson	Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files.	Bioinform.	2018	DBLP DOI BibTeX RDF
26	Maurits J. J. Dijkstra, Punto Bawono, Sanne Abeln, K. Anton Feenstra, Wan J. Fokkink, Jaap Heringa	Motif-Aware PRALINE: Improving the alignment of motif regions.	PLoS Comput. Biol.	2018	DBLP DOI BibTeX RDF
26	Mohsen Moftah, Mohammed Waleed Fakhr, Salwa H. El-Ramly	Arabic dialect identification based on motif discovery using GMM-UBM with different motif lengths.	ICNLSP	2018	DBLP DOI BibTeX RDF
26	Martin Nettling, Hendrik Treutler, Jesús Cerquides, Ivo Grosse	Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
26	Anas Al-Okaily, Chun-Hsi Huang	ET-Motif: Solving the Exact (l, d)-Planted Motif Problem Using Error Tree Structure.	J. Comput. Biol.	2016	DBLP DOI BibTeX RDF
26	W. Victor H. Yarlott, Mark A. Finlayson	Learning a Better Motif Index: Toward Automated Motif Extraction.	CMN	2016	DBLP DOI BibTeX RDF
26	Yuhong Li, Leong Hou U, Man Lung Yiu, Zhiguo Gong	Quick-motif: An efficient and scalable framework for exact motif discovery.	ICDE	2015	DBLP DOI BibTeX RDF
26	Adnan Ferdous Ashrafi, A. K. M. Iqtidar Newaz, Rasif Ajwad, Moin Mahmud Tanvee, Md. A. Mottalib	A modified algorithm for DNA motif finding and ranking considering variable length motif and mutation.	ReTIS	2015	DBLP DOI BibTeX RDF
26	Özlem Polat	Protein fold classification and motif retrieval methods by using the primary and secondary structures (Primer ve sekonder yapılar kullanılarak proteinlerin fold düzeyinde sınıflandırılması ve motif çıkarımı)		2015	RDF
26	Luis A. A. Meira, Vinícius R. Máximo, Álvaro Luiz Fazenda 0001, Arlindo Flávio da Conceição	acc-Motif: Accelerated Network Motif Detection.	IEEE ACM Trans. Comput. Biol. Bioinform.	2014	DBLP DOI BibTeX RDF
26	Sebastian Maurer-Stroh, He Gao, Hao Han, Lies Baeten, Joost Schymkowitz, Frederic Rousseau 0001, Louxin Zhang, Frank Eisenhaber	Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif.	J. Bioinform. Comput. Biol.	2013	DBLP DOI BibTeX RDF
26	Lydie Vamparys	Exploration de la reconnaissance de la courbure membranaire par le motif ALPS. (Exploring the recognition of membrane curvature by the ALPS motif).		2013	RDF
26	Shih-Yen Ku, Yuh-Jyh Hu	Structural alphabet motif discovery and a structural motif database.	Comput. Biol. Medicine	2012	DBLP DOI BibTeX RDF
26	Bifan Wei, Jun Liu 0002, Jian Ma, Qinghua Zheng, Wei Zhang 0053, Boqin Feng	MOTIF-RE: Motif-Based Hypernym/Hyponym Relation Extraction from Wikipedia Links.	ICONIP (5)	2012	DBLP DOI BibTeX RDF
26	Vinhthuy Phan	Motif Tool Manager: a web-based platform for motif discovery.	BMC Bioinform.	2009	DBLP BibTeX RDF
26	Ivan V. Kulakovskiy, Alexander V. Favorov, Vsevolod J. Makeev	Motif discovery and motif finding from genome-mapped DNase footprint data.	Bioinform.	2009	DBLP DOI BibTeX RDF
26	Vinhthuy Phan, Nicholas A. Furlotte	Motif Tool Manager: a web-based framework for motif discovery.	Bioinform.	2008	DBLP DOI BibTeX RDF
26	Erik Larsson, Per Lindahl, Petter Mostad	HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
26	Janina Reeder, Jens Reeder, Robert Giegerich	Locomotif: from graphical motif description to RNA motif search.	ISMB/ECCB (Supplement of Bioinformatics)	2007	DBLP DOI BibTeX RDF
26	Henry C. M. Leung, Francis Y. L. Chin	An efficient motif discovery algorithm with unknown motif length and number of binding sites.	Int. J. Data Min. Bioinform.	2006	DBLP DOI BibTeX RDF
26	Shane T. Jensen, Lei Shen, Jun S. Liu	Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.	Bioinform.	2005	DBLP DOI BibTeX RDF
26	Antony Fountain, Paula M. Ferguson	Motif reference manual for Motif 2.1, volume six B - the definitive guides to the X Window systems (2. ed.).		2000	RDF
26		OSF/Motif programmer's reference - revision 1.1 for OSF/Motif release 1.1.		1991	RDF
26		OSF/Motif programmer's guide - revision 1.1 for OSF/Motif release 1.1.		1991	RDF
26		OSF/Motif style guide - revision 1.1 for OSF/Motif release 1.1.		1991	RDF
26	Adrian Nye, Tim O'Reilly	X toolkit intrinsics programming manual - OSF/Motif 1.1 edition for X11, release 4 (motif Edition).		1990	RDF
23	Qi Wang, Shiwei Yan, Shengjun Liu, Xian Li	Frequency Domain Analysis of a Stochastic Biological Network Motif with Delay.	Complex (2)	2009	DBLP DOI BibTeX RDF	Intrinsic and extrinsic sources, transcriptional and translational time delay, frequency domain analysis, negative feedback
23	Francis Y. L. Chin, Henry C. M. Leung	DNA Motif Representation with Nucleotide Dependency.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Pattern Recognition, Design Methodology, Pattern analysis, Computing Methodologies
23	Chen Chen, Bertil Schmidt, Weiguo Liu, Wolfgang Müller-Wittig	GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences.	PRIB	2008	DBLP DOI BibTeX RDF
23	Xiuchun Shi, Longde Wu, Hongyong Yang	Scientific Collaboration Network Evolution Model Based on Motif Emerging.	ICYCS	2008	DBLP DOI BibTeX RDF
23	Christina Boucher, Daniel G. Brown 0001, Stephane Durocher	On the Structure of Small Motif Recognition Instances.	SPIRE	2008	DBLP DOI BibTeX RDF
23	Henry Y. T. Ngan, Grantham K. H. Pang, Nelson H. C. Yung	Patterned Fabric Defect Detection using a Motif-Based Approach.	ICIP (2)	2007	DBLP DOI BibTeX RDF
23	Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink	Nucleosome Occupancy Information Improves de novo Motif Discovery.	RECOMB	2007	DBLP DOI BibTeX RDF