Search results for "molecules"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
24	Ruiqi Wang, Xing-Ming Zhao, Zengrong Liu	Modeling and Dynamical Analysis of Molecular Networks.	Complex (2)	2009	DBLP DOI BibTeX RDF	molecular networks, Modeling, analyzing
24	Muhieddine El Kaissi, Ming Jia, Dirk Reiners, Julie A. Dickerson, Eve Syrkin Wurtele	Reaction Centric Layout for Metabolic Networks.	ISVC (2)	2009	DBLP DOI BibTeX RDF
24	Tetsuo Shibuya, Jesper Jansson 0001, Kunihiko Sadakane	Linear-Time Protein 3-D Structure Searching with Insertions and Deletions.	WABI	2009	DBLP DOI BibTeX RDF
24	Ravi Bansal, Lawrence H. Staib, Dongrong Xu, Andrew F. Laine, Jason Royal, Bradley S. Peterson	Using Perturbation Theory to Compute the Morphological Similarity of Diffusion Tensors.	IEEE Trans. Medical Imaging	2008	DBLP DOI BibTeX RDF
24	Zuwairie Ibrahim, John A. Rose, Akira Suyama, Marzuki Khalid	Experimental implementation and analysis of a DNA computing readout method based on real-time PCR with TaqMan probes.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Graduated PCR, Readout method, Real-time PCR, TaqMan probes, DNA computation, Hamiltonian path problem
24	Daniele D'Agostino, Andrea Clematis, Ivan Merelli, Luciano Milanesi, Matteo Coloberti	A Grid Service based Parallel Molecular Surface Reconstruction System.	PDP	2008	DBLP DOI BibTeX RDF	paralle molecular surface reconstruction, isosurface extraction
24	Anne Condon	Computational Challenges and Opportunities in the Design of Unconventional Machines from Nucleic Acids.	UC	2008	DBLP DOI BibTeX RDF
24	Caroline Farrelly, Douglas B. Kell, Joshua D. Knowles	Molecular Structure Elucidation Using Ant Colony Optimization: A Preliminary Study.	ANTS Conference	2008	DBLP DOI BibTeX RDF
24	Israel Huff, Chris Weigle, David C. Banks	Ensemble-space visualization improves perception of 3D state of molecular dynamics simulation.	APGV	2008	DBLP DOI BibTeX RDF	bulk properties, ensemble space, pair correlation, radial function, scalable visualization, perception, molecular dynamics
24	Erik Winfree	Toward molecular programming with DNA.	ASPLOS	2008	DBLP DOI BibTeX RDF	molecular programming, DNA
24	Menaka Rajapakse, Feng Lin 0002	Predicting Binding Peptides with Simultaneous Optimization of Entropy and Evolutionary Distance.	PRIB	2007	DBLP DOI BibTeX RDF
24	Zuwairie Ibrahim, Muhammad Faiz Mohamed Saaid, Ali S. Paramita, Akira Suyama, John A. Rose	An improved readout method of molecular computation based on real-time PCR implemented on DNA Engine Opticon 2 System.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
24	María-Elena Algorri, Marc Zimmermann 0001, Martin Hofmann-Apitius	Automatic Recognition of Chemical Images.	ENC	2007	DBLP DOI BibTeX RDF
24	Garrett S. Rose, Mircea R. Stan	A programmable majority logic array using molecular scale electronics.	FPGA	2006	DBLP DOI BibTeX RDF
24	Tadahiro Kin, Tetsuya Nemoto, Ken-ichi Makino, Kazuharu Koide	Molecular Dynamics Simulation of Complex Phase Transition of Clathrate Hydrates in Living Body.	ICICIC (3)	2006	DBLP DOI BibTeX RDF
24	Zuwairie Ibrahim, John A. Rose, Yusei Tsuboi, Osamu Ono, Marzuki Khalid	A New Readout Approach in DNA Computing Based on Real-Time PCR with TaqMan Probes.	DNA	2006	DBLP DOI BibTeX RDF
24	Natasa Jonoska, Gregory L. McColm	Flexible Versus Rigid Tile Assembly.	UC	2006	DBLP DOI BibTeX RDF
24	Susana K. Lai-Yuen, Yuan-Shin Lee	Energy-Field Optimization and Haptic-Based Molecular Docking and Assembly Search System for Computer-Aided Molecular Design (CAMD).	HAPTICS	2006	DBLP DOI BibTeX RDF	Computer-aided molecular design, molecular assembly, nanotechnology, molecular docking
24	Jürgen Paetz	Generalization Rules for Binarized Descriptors.	ISBMDA	2006	DBLP DOI BibTeX RDF
24	Nattakarn Ratprasartporn, Ali Cakmak 0001, Gultekin Özsoyoglu	On Data and Visualization Models for Signaling Pathways.	SSDBM	2006	DBLP DOI BibTeX RDF
24	Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang	RNA-RNA Interaction Prediction and Antisense RNA Target Search.	RECOMB	2005	DBLP DOI BibTeX RDF
24	Zhixiang Yin, Jianzhong Cui, Jing Yang 0037, Guangwu Liu	DNA Computing Model of Graph Isomorphism Based on Three Dimensional DNA Graph Structures.	ICIC (2)	2005	DBLP DOI BibTeX RDF
24	Anna Shumilina	A Fast Method for Determination of Solvent-Exposed Atoms and Its Possible Applications for Implicit Solvent Models.	ICCSA (1)	2005	DBLP DOI BibTeX RDF
24	Carlos Bustamante	Recent advances on the manipulation of single biomolecules.	RECOMB	2004	DBLP DOI BibTeX RDF
24	Pedro A. Reche, Ellis L. Reinherz	Definition of MHC Supertypes Through Clustering of MHC Peptide Binding Repertoires.	ICARIS	2004	DBLP DOI BibTeX RDF
24	Alan S. Perelson	An Overview of Computational and Theoretical Immunology.	ICARIS	2004	DBLP DOI BibTeX RDF
24	Matteo Cavaliere, Natasa Jonoska, Sivan Yogev, Ron Piran, Ehud Keinan, Nadrian C. Seeman	Biomolecular Implementation of Computing Devices with Unbounded Memory.	DNA	2004	DBLP DOI BibTeX RDF
24	Peter Dittrich	Chemical Computing.	UPP	2004	DBLP DOI BibTeX RDF
24	Jean-Pierre Banâtre, Pascal Fradet, Yann Radenac	Higher-Order Chemical Programming Style.	UPP	2004	DBLP DOI BibTeX RDF
24	Rahul Singh	Reasoning about Molecular Similarity and Properties.	CSB	2004	DBLP DOI BibTeX RDF
24	Daeho Lim, Kyungsook Han	PairAnalyzer: Extracting and Visualizing RNA Structure Elements Formed by Base Pairing.	International Conference on Computational Science	2004	DBLP DOI BibTeX RDF
24	John Samuel 0001, Praveen Elamanchili, Manish Diwan, Azita Haddadi, Anahita Dehmoobed	Nanoparticulate Delivery Systems for Control of Immunity.	ICMENS	2004	DBLP DOI BibTeX RDF
24	Christophe Lenglet, Rachid Deriche, Olivier D. Faugeras	Inferring White Matter Geometry from Di.usion Tensor MRI: Application to Connectivity Mapping.	ECCV (4)	2004	DBLP DOI BibTeX RDF
24	Udo Feldkamp, Hilmar Rauhe, Wolfgang Banzhaf	Software Tools for DNA Sequence Design.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	molecular self-assembly, specific hybridization, DNA computing, DNA nanotechnology, sequence design
24	Subhayu Basu, David K. Karig, Ron Weiss	Engineering signal processing in cells: Towards molecular concentration band detection.	Nat. Comput.	2003	DBLP DOI BibTeX RDF	cell-cell communications, genetic signal processing, synthetic gene networks, cellular computation
24	Mihai Ionescu, Carlos Martín-Vide, Andrei Paun, Gheorghe Paun	Unexpected universality results for three classes of P systems with symport/antiport.	Nat. Comput.	2003	DBLP DOI BibTeX RDF	membrane computing, P system, Turing computability, Chomsky hierarchy
24	Heiko Hofer, Christian Borgelt, Michael R. Berthold	Large Scale Mining of Molecular Fragments with Wildcards.	IDA	2003	DBLP DOI BibTeX RDF
24	James R. Heath	A systems approach to molecular electronics.	ISLPED	2003	DBLP DOI BibTeX RDF
24	Paolo Bottoni, Carlos Martín-Vide, Gheorghe Paun, Grzegorz Rozenberg	Membrane systems with promoters/inhibitors.	Acta Informatica	2002	DBLP DOI BibTeX RDF
24	Subhayu Basu, David K. Karig, Ron Weiss	Engineering Signal Processing in Cells: Towards Molecular Concentration Band Detection.	DNA	2002	DBLP DOI BibTeX RDF
24	Christine E. Heitsch, Anne Condon, Holger H. Hoos	From RNA Secondary Structure to Coding Theory: A Combinatorial Approach.	DNA	2002	DBLP DOI BibTeX RDF
24	Mihai Ionescu, Carlos Martín-Vide, Andrei Paun, Gheorghe Paun	Unexpected Universality Results for Three Classes of P Systems with Symport/Antiport.	DNA	2002	DBLP DOI BibTeX RDF
24	Rudolf Freund, Andrei Paun	Membrane Systems with Symport/Antiport Rules: Universality Results.	WMC-CdeA	2002	DBLP DOI BibTeX RDF
24	Yasubumi Sakakibara, Satoshi Kobayashi	Sticker systems with complex structures.	Soft Comput.	2001	DBLP DOI BibTeX RDF	Sticker system, DNA computing, Self-assembly, Secondary structure
24	Akio Nishikawa, Masayuki Yamamura, Masami Hagiya	DNA computation simulator based on abstract bases.	Soft Comput.	2001	DBLP DOI BibTeX RDF	Threshold approach, Stochastic approach, Fitting parameters using genetic algorithms, Simulation, DNA computing
24	Karl D. Hardman	Data Base Requirements For Graphical Applications In Biochemistry.	Data Base Techniques for Pictorial Applications	1979	DBLP DOI BibTeX RDF
22	Carlile Lavor, Leo Liberti, Antonio Mucherino, Nelson Maculan	On a discretizable subclass of instances of the molecular distance geometry problem.	SAC	2009	DBLP DOI BibTeX RDF	protein backbone, protein molecules, undirected weighted graph, distance geometry, combinatorialization
22	Antonio Mucherino, Leo Liberti, Carlile Lavor, Nelson Maculan	Comparisons between an exact and a metaheuristic algorithm for the molecular distance geometry problem.	GECCO	2009	DBLP DOI BibTeX RDF	branch and prune, monkey search, protein molecules, combinatorial optimization, distance geometry
22	Andrew F. Newman, Yuan-Fang Li, Jane Hunter 0001	Scalable Semantics - The Silver Lining of Cloud Computing.	eScience	2008	DBLP DOI BibTeX RDF	RDF molecules, data integration, distributed processing, RDF, MapReduce
22	Alessandra Carbone, Nadrian C. Seeman	Coding and geometrical shapes in nanostructures: A fractal DNA-assembly.	Nat. Comput.	2003	DBLP DOI BibTeX RDF	coding of tiles, DNA assembly, geometry of tiles, Sierpinski fractals, tiling, DNA nanotechnology, DNA molecules
20	Ku-Jin Kim, Jung-Eun Lee, Nakhoon Baek	Voronoi diagram computation for protein molecules using graphics hardware.	SIGGRAPH Posters	2010	DBLP DOI BibTeX RDF
20	Pekka Tiikkainen, Antti Poso, Olli-P. Kallioniemi	Comparison of structure fingerprint and molecular interaction field based methods in explaining biological similarity of small molecules in cell-based screens.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Ligand-based virtual screening, NCI-60, Chemical similarity, Data fusion
20	Miki Hirabayashi, Hirotada Ohashi, Tai Kubo	Experimental analysis of the basic idea on the transcription-based diagnostic automata controlled by programmed molecules.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Nucleic acid detection systems, Molecular programming, Autonomous diagnostic devices, Molecular circuits, DNA computing, Biomolecular computing
20	Tom Woo	How Do We Simulate Things at the Scale of Molecules and Electrons? An Introduction to the Technology and HPC Aspects of Computational Chemistry.	HPCS	2008	DBLP DOI BibTeX RDF
20	Yue Liu, Yafeng Yin, Zaixia Teng, Qi Wu, Guozheng Li 0001	Activities Prediction of Drug Molecules by Using the Optimal Ensemble Based on Uniform Design.	ICIC (1)	2008	DBLP DOI BibTeX RDF	Uniform Design, Neural Network Ensemble, Drug Design
20	Vitoantonio Bevilacqua, Paolo Pannarale, Giuseppe Mastronardi, Amalia Azzariti, Stefania Tommasi, Filippo Menolascina, Francesco Iorio, Diego di Bernardo, Angelo Paradiso, Nicola A. Colabufo, Francesco Berardi, Roberto Perrone, Roberto Tagliaferri	High-Throughput Analysis of the Drug Mode of Action of PB28, MC18 and MC70, Three Cyclohexylpiperazine Derivative New Molecules.	ICIC (2)	2008	DBLP DOI BibTeX RDF
20	Ping Zhang 0008, Vladimir Brusic, Kaye E. Basford	A Hybrid Model for Prediction of Peptide Binding to MHC Molecules.	ICONIP (1)	2008	DBLP DOI BibTeX RDF
20	Barbora Kozlíková, Filip Andres, Jiri Sochor	Visualization of tunnels in protein molecules.	Afrigraph	2007	DBLP DOI BibTeX RDF	loop subdivision, visualization, protein, tunnel, tetrahedrization
20	Masayuki Yamamura, Noriko Hirayama, Ken Komiya	An implementation of Aqueous memory molecules with light responsive DNAs.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
20	Miki Hirabayashi, Hirotada Ohashi, Tai Kubo	Experimental Validation of the Transcription-Based Diagnostic Automata with Quantitative Control by Programmed Molecules.	DNA	2007	DBLP DOI BibTeX RDF	nucleic acid detection systems, molecular programming, autonomous diagnostic devices, molecular circuits, DNA computing, Biomolecular computing
20	I. Noorbatcha, B. Arifin, S. M. Zain	Ab Initio Quantum Chemical Studies of Six-Center Bond Exchange Reactions Among Halogen and Halogen Halide Molecules.	International Conference on Computational Science (2)	2007	DBLP DOI BibTeX RDF	Ab initio, six-center bond exchange reaction, halogen, halogen halide
20	Mathews Jacob, Thierry Blu, C. Vaillant, J. H. Maddocks, Michael Unser	3-D shape estimation of DNA molecules from stereo cryo-electron micro-graphs using a projection-steerable snake.	IEEE Trans. Image Process.	2006	DBLP DOI BibTeX RDF
20	J. K. Kraus, Josef Schicho	Algebraic Multigrid Based on Computational Molecules, 1: Scalar Elliptic Problems.	Computing	2006	DBLP DOI BibTeX RDF	Edge matrices, interpolation weights, coarse-grid selection, algebraic multigrid
20	Christophe Labbez, Bo Jönsson	A New Monte Carlo Method for the Titration of Molecules and Minerals.	PARA	2006	DBLP DOI BibTeX RDF
20	Refael Hassin, Einat Or	A Maximum Profit Coverage Algorithm with Application to Small Molecules Cluster Identification.	WEA	2006	DBLP DOI BibTeX RDF
20	Rui Shogenji, Naoya Tate, Taro Beppu, Yusuke Ogura, Jun Tanida	Local Area Manipulation of DNA Molecules for Photonic DNA Memory.	DNA	2006	DBLP DOI BibTeX RDF
20	Zsolt Németh, Christian Pérez, Thierry Priol	Distributed workflow coordination: molecules and reactions.	IPDPS	2006	DBLP DOI BibTeX RDF
20	Anne Condon	RNA Molecules: Glimpses Through an Algorithmic Lens.	LATIN	2006	DBLP DOI BibTeX RDF
20	Yusuke Ogura, Taro Beppu, Masahiro Takinoue, Akira Suyama, Jun Tanida	Control of DNA Molecules on a Microscopic Bead Using Optical Techniques for Photonic DNA Memory.	DNA	2005	DBLP DOI BibTeX RDF
20	Shawn Martin, W. Michael Brown, Jean-Loup Faulon, Derick C. Weis, Donald P. Visco	Inverse Design of Large Molecules using Linear Diophantine Equations.	CSB Workshops	2005	DBLP DOI BibTeX RDF
20	Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das 0001	A Diffusion Model to Estimate the Inter-arrival Time of Charged Molecules in Stochastic Event based Modeling of Complex Biological Networks.	CSB Workshops	2005	DBLP DOI BibTeX RDF
20	Daniele Masotti, Elisa Ficarra, Enrico Macii, Luca Benini	Techniques for Enhancing Computation of DNA Curvature Molecules.	BIBE	2004	DBLP DOI BibTeX RDF	DNA curvature, AFM images, optimization problem
20	Vladimir Svetnik, Andy Liaw, Christopher Tong, Ting Wang	Application of Breiman's Random Forest to Modeling Structure-Activity Relationships of Pharmaceutical Molecules.	Multiple Classifier Systems	2004	DBLP DOI BibTeX RDF
20	Yusuke Ogura, Takashi Kawakami, Fumika Sumiyama, Satoru Irie, Akira Suyama, Jun Tanida	Methods for Manipulating DNA Molecules in a Micrometer Scale Using Optical Techniques.	DNA	2004	DBLP DOI BibTeX RDF
20	Steven Schkolne, Hiroshi Ishii 0001, Peter Schröder	Immersive Design of DNA Molecules with a Tangible Interface.	IEEE Visualization	2004	DBLP DOI BibTeX RDF	props, spatial construction, responsive workbench, DNA design, virtual reality, augmented reality, tangible user interface, molecular modeling, molecular visualization
20	Sanjay Goswami, Susmita Sur-Kolay	Virtual Molecular Computing - Emulating DNA Molecules.	IWDC	2004	DBLP DOI BibTeX RDF
20	Gianluca Argentini	Message Passing Fluids: Molecules as Processes in Parallel Computational Fluids.	PVM/MPI	2003	DBLP DOI BibTeX RDF
20	Armando Blanco, David A. Pelta, José L. Verdegay	Pattern Search in Molecules with FANS: Preliminary Results.	EvoWorkshops	2003	DBLP DOI BibTeX RDF
20	André D. Bandrauk, H. Z. Lu	Numerical Methods for Molecular Photonics - the Nonlinear Nonperturbative Response of Molecules in Intense Laser Fields.	HPCS	2002	DBLP DOI BibTeX RDF	Molecular Photonics, Adaptive Moving Grid and Parallel Computation, Algorithms, Lasers
20	Masahiro Kitagawa	Experimental Quantum Computation with Molecules.	Developments in Language Theory	2002	DBLP DOI BibTeX RDF
20	Luigi G. Occhipinti, Luigi Fortuna	Organic molecules and composites with applications in micro and nanoelectronic systems.	ISCAS (4)	2002	DBLP DOI BibTeX RDF
20	Dina Duhovny, Ruth Nussinov, Haim J. Wolfson	Efficient Unbound Docking of Rigid Molecules.	WABI	2002	DBLP DOI BibTeX RDF
20	Helio J. C. Barbosa, Fernanda M. P. Raupp, Carlile Lavor, H. Lima, Nelson Maculan	A Hybrid Genetic Algorithm for Finding Stable Conformations of Small Molecules.	SBRN	2000	DBLP DOI BibTeX RDF
20	Jorge M. Pacheco, José Luís Martins	Parallelization of a Density Functional Program for Monte-Carlo Simulation of Large Molecules.	VECPAR	2000	DBLP DOI BibTeX RDF
20	Samarjit Chakraborty, Somenath Biswas	Approximation Algorithms for 3-D Commom Substructure Identification in Drug and Protein Molecules.	WADS	1999	DBLP DOI BibTeX RDF
20	Susanne Beiersdörfer, Jürgen Hesser, Jens B. Schmitt, Reinhard Männer, Andreas Schulz, Jürgen Wolfrum	Search for native conformations of organic molecules by genetic algorithms.	EUROMICRO	1997	DBLP DOI BibTeX RDF	organic molecule native conformations, problem specific crossover operators, repair heuristics, fluorescent labeled nucleoside, oligopeptide, molecule structure adapted crossovers, global optimum, Met-Enkephaline, ECEPP2 force field, genetic algorithms, search, probability, island model, molecular configurations, structure prediction
16	Andrés de la Peña, Francisco J. Cisneros, Ángel Goñi Moreno, Juan Castellanos	DNA Electrophoresis Simulation.	IWANN (2)	2009	DBLP DOI BibTeX RDF	Electrophoresis, Simulation, Software, DNA Computing
16	Tetsuo Shibuya	Searching Protein 3-D Structures in Linear Time.	RECOMB	2009	DBLP DOI BibTeX RDF
16	Michael D. Kalugin, Alexandr V. Teplukhin	Parallel Monte Carlo study on caffeine-DNA interaction in aqueous solution.	IPDPS	2009	DBLP DOI BibTeX RDF
16	Ikno Kim, Junzo Watada	A Biologically Intelligent Encoding Approach to a Hierarchical Classification of Relational Elements in a Digraph.	KES (2)	2009	DBLP DOI BibTeX RDF
16	Maxime Descoteaux, Rachid Deriche, Denis Le Bihan, Jean-François Mangin, Cyril Poupon	Diffusion Propagator Imaging: Using Laplace's Equation and Multiple Shell Acquisitions to Reconstruct the Diffusion Propagator.	IPMI	2009	DBLP DOI BibTeX RDF
16	Sara Comai, Davide Mazza	A Haptic-Enhanced System for Molecular Sensing.	INTERACT (2)	2009	DBLP DOI BibTeX RDF
16	Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu	Structural Alignment of RNA with Complex Pseudoknot Structure.	WABI	2009	DBLP DOI BibTeX RDF	pseudoknots, Structural alignment, non-coding RNA
16	Sebastian Böcker, Florian Rasche, Tamara Steijger	Annotating Fragmentation Patterns.	WABI	2009	DBLP DOI BibTeX RDF
16	Yelena Frid, Dan Gusfield	A Simple, Practical and Complete O(\fracn3 logn)O(\frac{n^3}{ \log n})-Time Algorithm for RNA Folding Using the Four-Russians Speedup.	WABI	2009	DBLP DOI BibTeX RDF
16	Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen	A Tree Based Method for the Rapid Screening of Chemical Fingerprints.	WABI	2009	DBLP DOI BibTeX RDF
16	Edoardo Aprà, Alistair P. Rendell, Robert J. Harrison, Vinod Tipparaju, Wibe A. de Jong, Sotiris S. Xantheas	Liquid water: obtaining the right answer for the right reasons.	SC	2009	DBLP DOI BibTeX RDF
16	Max Pereira, Vítor Santos Costa, Rui Camacho, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito	Comparative Study of Classification Algorithms Using Molecular Descriptors in Toxicological DataBases.	BSB	2009	DBLP DOI BibTeX RDF
16	Marcel Yang, David P. McMullen, Rochelle D. Schwartz-Bloom, Rachael Brady	DiVE into Alcohol: A Biochemical Immersive Experience.	VR	2009	DBLP DOI BibTeX RDF
16	Georgina Mirceva, Andrea Kulakov, Danco Davcev	SGNG Protein Classifier by Matching 3D Structures.	HAIS	2009	DBLP DOI BibTeX RDF