Search results for "phylogeny"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
28	Jijun Tang, Li-San Wang	Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony.	BIBE	2005	DBLP DOI BibTeX RDF
28	Nir Ailon, Moses Charikar	Fitting tree metrics: Hierarchical clustering and Phylogeny.	FOCS	2005	DBLP DOI BibTeX RDF
28	Ravi Vijaya Satya, Amar Mukherjee	An Efficient Algorithm for Perfect Phylogeny Haplotyping.	CSB	2005	DBLP DOI BibTeX RDF
28	Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan	PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction.	ICPADS (2)	2005	DBLP DOI BibTeX RDF
28	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier	Parallel Inference of a 10.000-Taxon Phylogeny with Maximum Likelihood.	Euro-Par	2004	DBLP DOI BibTeX RDF
28	Peter Damaschke	Parameterized Enumeration, Transversals, and Imperfect Phylogeny Reconstruction.	IWPEC	2004	DBLP DOI BibTeX RDF
28	Dehua H. Hang, Charles Ofria, Thomas M. Schmidt, Eric Torng	The Effect of Natural Selection on Phylogeny Reconstruction Algorithms.	GECCO	2003	DBLP DOI BibTeX RDF
24	Mariana B. Monteiro, Manuela E. Pintado, Francisco X. Malcata, Conrad Bessant, Patrícia R. Moreira	Development of a Workflow for Protein Sequence Analysis Based on the Taverna Workbench Software.	IWANN (2)	2009	DBLP DOI BibTeX RDF	protein sequence analysis, Taverna Workbench®, web services, workflow
24	Michael R. Fellows, Tzvika Hartman, Danny Hermelin, Gad M. Landau, Frances A. Rosamond, Liat Rozenberg	Haplotype Inference Constrained by Plausible Haplotype Data.	CPM	2009	DBLP DOI BibTeX RDF
24	Michael Elberfeld, Ilka Schnoor, Till Tantau	Influence of Tree Topology Restrictions on the Complexity of Haplotyping with Missing Data.	TAMC	2009	DBLP DOI BibTeX RDF
24	Duygu Çakmak, Esra Erdem 0001, Halit Erdogan	Computing Weighted Solutions in Answer Set Programming.	LPNMR	2009	DBLP DOI BibTeX RDF
24	Reuven Bar-Yehuda, Ido Feldman, Dror Rawitz	Improved Approximation Algorithm for Convex Recoloring of Trees.	Theory Comput. Syst.	2008	DBLP DOI BibTeX RDF	Convex recoloring, Approximation algorithms, Phylogenetic trees, Local ratio
24	Fei Ye, Yan Guo, Andrew Lawson, Jijun Tang	Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data.	WEA	2007	DBLP DOI BibTeX RDF
24	Neha Nahar, Lutz Hamel, Maria S. Poptsova, J. Peter Gogarten	GPX: A Tool for the Exploration and Visualization of Genome Evolution.	BIBE	2007	DBLP DOI BibTeX RDF
24	Feng Yue, Meng Zhang 0006, Jijun Tang	A Heuristic for Phylogenetic Reconstruction Using Transposition.	BIBE	2007	DBLP DOI BibTeX RDF
24	Anne Berry, Alain Sigayret, Christine Sinoquet	Maximal sub-triangulation in pre-processing phylogenetic data.	Soft Comput.	2006	DBLP DOI BibTeX RDF
24	Xiaoxu Han	Inferring Species Phylogenies: A Microarray Approach.	ICIC (3)	2006	DBLP DOI BibTeX RDF
24	Guoqing Lu, Liying Jiang, Resa M. Kotalik, Thaine W. Rowley, Luwen Zhang, Xianfeng Chen, Etsuko N. Moriyama	GenomeBlast: A Web Tool for Small Genome Comparison.	IMSCCS (1)	2006	DBLP DOI BibTeX RDF
24	Barbara R. Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton	Imputing Supertrees and Supernetworks from Quartets.	WABI	2006	DBLP DOI BibTeX RDF
24	Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai	Phylogenetic Network Inferences Through Efficient Haplotyping.	WABI	2006	DBLP DOI BibTeX RDF
24	Reuven Bar-Yehuda, Ido Feldman, Dror Rawitz	Improved Approximation Algorithm for Convex Recoloring of Trees.	WAOA	2005	DBLP DOI BibTeX RDF
24	Esra Erdem 0001, Vladimir Lifschitz, Luay Nakhleh, Donald Ringe	Reconstructing the Evolutionary History of Indo-European Languages Using Answer Set Programming.	PADL	2003	DBLP DOI BibTeX RDF
24	Gerton Lunter, István Miklós, Alexei J. Drummond, Jens Ledet Jensen, Jotun Hein	Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model.	WABI	2003	DBLP DOI BibTeX RDF
24	Bernard M. E. Moret, Li-San Wang, Tandy J. Warnow	Toward New Software for Computational Phylogenetics.	Computer	2002	DBLP DOI BibTeX RDF
24	Alexandros Stamatakis, Thomas Ludwig 0002, Harald Meier, Marty J. Wolf	AxML: A Fast Program for Sequential and Parallel Phylogenetic Tree Calculations Based on the Maximum Likelihood Method.	CSB	2002	DBLP DOI BibTeX RDF
24	Itsik Pe'er, Ron Shamir, Roded Sharan	On the Generality of Phylogenies from Incomplete Directed Characters.	SWAT	2002	DBLP DOI BibTeX RDF
19	Suzanne J. Matthews, Seung-Jin Sul, Tiffani L. Williams	TreeZip: A New Algorithm for Compressing Large Collections of Evolutionary Trees.	DCC	2010	DBLP DOI BibTeX RDF	treezip, compression, trees, phylogeny, evolutionary tree
19	Jens Stoye, Roland Wittler	A Unified Approach for Reconstructing Ancient Gene Clusters.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	gene order, gene cluster reconstruction, consistency, phylogeny, Comparative genomics, parsimony, gene cluster
19	Priyank Raj Katariya, Sathish S. Vadhiyar	Phylogenetic Predictions on Grids.	eScience	2009	DBLP DOI BibTeX RDF	Grids, predictions, phylogeny, DNA sequences, master-worker
19	Jean-Michel Richer, Adrien Goëffon, Jin-Kao Hao	A Memetic Algorithm for Phylogenetic Reconstruction with Maximum Parsimony.	EvoBIO	2009	DBLP DOI BibTeX RDF	progressive descent, tree crossover, memetic algorithm, phylogeny, Maximum Parsimony
19	Travis J. Wheeler	Large-Scale Neighbor-Joining with NINJA.	WABI	2009	DBLP DOI BibTeX RDF	Phylogeny inference, external memory, Neighbor joining
19	Adrien Goëffon, Jean-Michel Richer, Jin-Kao Hao	Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	phylogeny reconstruction, optimization, combinatorial algorithms, maximum parsimony
19	David G. Mitchell, Faraz Hach, Raheleh Mohebali	Faster Phylogenetic Inference with MXG.	LPAR	2007	DBLP DOI BibTeX RDF	Model Expansion, Declarative Programming, Phylogeny
19	Ai Xia, Maria V. Sharakhova, Igor V. Sharakhov	Reconstructing an Inversion History in the Anopheles Gambiae Complex.	RECOMB-CG	2007	DBLP DOI BibTeX RDF	Anopheles gambiae complex, chromosome rearrangement, phylogeny
19	Bhaskar DasGupta, Sergio Ferrarini, Uthra Gopalakrishnan, Nisha Raj Paryani	Inapproximability results for the lateral gene transfer problem.	J. Comb. Optim.	2006	DBLP DOI BibTeX RDF	Lateral gene transfer, Phylogeny, Inapproximability
19	Tiffani L. Williams, Marc L. Smith	The role of diverse populations in phylogenetic analysis.	GECCO	2006	DBLP DOI BibTeX RDF	phylogeny reconstruction, memetic algorithms, maximum parsimony
19	Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel	Phylogenetic Super-Networks from Partial Trees.	IEEE ACM Trans. Comput. Biol. Bioinform.	2004	DBLP DOI BibTeX RDF	partial trees, networks, closure operations, phylogeny, Molecular evolution
19	Eleazar Eskin, Eran Halperin, Richard M. Karp	Large scale reconstruction of haplotypes from genotype data.	RECOMB	2003	DBLP DOI BibTeX RDF	haplotype resolution, single nucleotide polymorphisms (SNPs), perfect phylogeny
19	Mathieu Blanchette	Algorithms for phylogenetic footprinting.	RECOMB	2001	DBLP DOI BibTeX RDF	phylogenetic footprinting, regulatory elements, algorithm, phylogeny, motif finding
19	Vincent Berry, David Bryant	Faster reliable phylogenetic analysis.	RECOMB	1999	DBLP DOI BibTeX RDF	combinatorially reliable edges, distance based methods, phylogeny reconstruction, quartet based methods, single linkage tree, polynomial time algorithms, computational biology
19	Lusheng Wang, Tao Jiang 0001, Dan Gusfield	A more efficient approximation scheme for tree alignment.	RECOMB	1997	DBLP DOI BibTeX RDF	approximation algorithm, computational biology, multiple sequence alignment, phylogeny, evolutionary tree
16	Uddalak Mitra, Soumya Majumder, Sayantan Bhowmick	A novel algorithm for genomic STR mining: application to phylogeny reconstruction and taxa identification.	Int. J. Bioinform. Res. Appl.	2024	DBLP DOI BibTeX RDF
16	Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson	Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications.	CoRR	2024	DBLP DOI BibTeX RDF
16	Yongtao Ye, Marcus H. Shum, Joseph L. Tsui, Guangchuang Yu, David K. Smith, Huachen Zhu, Joseph T. Wu, Yi Guan, Tommy Tsan-Yuk Lam	Robust expansion of phylogeny for fast-growing genome sequence data.	PLoS Comput. Biol.	2024	DBLP DOI BibTeX RDF
16	Jorke M. de Vlas	On the Parameterized Complexity of the Perfect Phylogeny Problem.	SOFSEM	2024	DBLP DOI BibTeX RDF
16	Petr Rysavý, Filip Zelezný	Reference-free phylogeny from sequencing data.	BioData Min.	2023	DBLP DOI BibTeX RDF
16	Veronica Guerrini, Alessio Conte, Roberto Grossi, Gianni Liti, Giovanna Rosone, Lorenzo Tattini	phyBWT2: phylogeny reconstruction via eBWT positional clustering.	Algorithms Mol. Biol.	2023	DBLP DOI BibTeX RDF
16	Naser Anjum, Raian Latif Nabil, Rakibul Islam Rafi, Md. Shamsuzzoha Bayzid, Mohammad Saifur Rahman	CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
16	Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Trevor Bedford, John Huddleston	Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition.	Frontiers Bioinform.	2023	DBLP DOI BibTeX RDF
16	Wen-Horng Sheu, Biing-Feng Wang	Parameterized Complexity for Finding a Perfect Phylogeny from Mixed Tumor Samples.	SIAM J. Discret. Math.	2023	DBLP DOI BibTeX RDF
16	Afif Elghraoui, Siavash Mirarab, Krister M. Swenson, Faramarz Valafar	Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates.	Bioinform.	2023	DBLP DOI BibTeX RDF
16		Correction to: Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Siddhant Grover, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein	Phylogenetic diversity statistics for all clades in a phylogeny.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Wei Wei, Andrew Millward, David Koslicki	Finding phylogeny-aware and biologically meaningful averages of metagenomic samples: L2UniFrac.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Alexander Lalejini, Matthew Andres Moreno, Jose Guadalupe Hernandez, Emily L. Dolson	Phylogeny-informed fitness estimation.	CoRR	2023	DBLP DOI BibTeX RDF
16	Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne	Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks.	CoRR	2023	DBLP DOI BibTeX RDF
16	Jorke M. de Vlas	On the parameterized complexity of the Perfect Phylogeny problem.	CoRR	2023	DBLP DOI BibTeX RDF
16	Long-Huei Chen, Mohana Prasad Sathya Moorthy, Pratyaksh Sharma	Bridging Phylogeny and Taxonomy with Protein-protein Interaction Networks.	CoRR	2023	DBLP DOI BibTeX RDF
16	Md Mahfuz Ibn Alam, Ruoyu Xie, Fahim Faisal, Antonios Anastasopoulos	GMNLP at SemEval-2023 Task 12: Sentiment Analysis with Phylogeny-Based Adapters.	CoRR	2023	DBLP DOI BibTeX RDF
16	Jorge Augusto Hongo, Giovanni Marques de Castro, Alison Pelri Albuquerque Menezes, Agnello César Rios Picorelli, Thieres Tayroni Martins da Silva, Eddie Luidy Imada, Luigi Marchionni, Luiz-Eduardo Del-Bem, Anderson Vieira Chaves, Gabriel Magno de Freitas Almeida, Felipe Campelo, Francisco Pereira Lobo	CALANGO: A phylogeny-aware comparative genomics tool for discovering quantitative genotype-phenotype associations across species.	Patterns	2023	DBLP DOI BibTeX RDF
16	Heesang Kim, Dohoon Kim	A Taxonomic Hierarchy of Blockchain Consensus Algorithms: An Evolutionary Phylogeny Approach.	Sensors	2023	DBLP DOI BibTeX RDF
16	Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt	Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
16	Simone Ciccolella, Gianluca Della Vedova, Vladimir Filipovic, Mauricio Soto Gomez	Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison.	Algorithms	2023	DBLP DOI BibTeX RDF
16	DeAngelo Wilson, John D. Rogers	Evaluating Compression-Based Phylogeny Estimation in the Presence of Incomplete Lineage Sorting.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
16	Muhammad Ali Nayeem, Naser Anjum Samudro, Mohammad Saifur Rahman, M. Sohel Rahman	MAMMLE: A Framework for Phylogeny Estimation Based on Multiobjective Application-aware Multiple Sequence Alignment and Maximum Likelihood Ensemble.	J. Comput. Biol.	2023	DBLP DOI BibTeX RDF
16	Md Mahfuz Ibn Alam, Ruoyu Xie, Fahim Faisal, Antonios Anastasopoulos	GMNLP at SemEval-2023 Task 12: Sentiment Analysis with Phylogeny-Based Adapters.	SemEval@ACL	2023	DBLP DOI BibTeX RDF
16	William Soto Martinez, Yannick Parmentier 0001, Claire Gardent	Phylogeny-Inspired Soft Prompts For Data-to-Text Generation in Low-Resource Languages.	IJCNLP (1)	2023	DBLP DOI BibTeX RDF
16	Milica Gerhardt, Luca Cuccovillo, Patrick Aichroth	Advancing Audio Phylogeny: A Neural Network Approach for Transformation Detection.	WIFS	2023	DBLP DOI BibTeX RDF
16	Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne	Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks.	KDD	2023	DBLP DOI BibTeX RDF
16	Jan Hajic Jr., Gustavo A. Ballen, Klára Hedvika Mühlová, Hana Vlhová-Wörner	Towards Building a Phylogeny of Gregorian Chant Melodies.	ISMIR	2023	DBLP DOI BibTeX RDF
16	Sumaira Zaman, Mukul S. Bansal	Reducing the Impact of Domain Rearrangement on Sequence Alignment and Phylogeny Reconstruction.	ISBRA	2023	DBLP DOI BibTeX RDF
16	Qiaoji Xu, David Sankoff	Gene Order Phylogeny via Ancestral Genome Reconstruction Under Dollo.	RECOMB-CG	2023	DBLP DOI BibTeX RDF
16	B. E. Pranav Kumaar, Aadharsh Aadhithya A, S. Sachin Kumar, Harishchander Anandaram, K. P. Soman	Optimal Perfect Phylogeny Using ILP and Continuous Approximations.	ICACDS	2023	DBLP DOI BibTeX RDF
16	Quoc Nguyen, Layla Oesper	Generalized Matching Distance: Tumor Phylogeny Comparison Beyond the Infinite Sites Assumption.	BCB	2023	DBLP DOI BibTeX RDF
16	Nikolaos Alachiotis 0001, Panagiotis Skrimponis, Manolis Pissadakis, Dionisios N. Pnevmatikatos	Scalable Phylogeny Reconstruction with Disaggregated Near-memory Processing.	ACM Trans. Reconfigurable Technol. Syst.	2022	DBLP DOI BibTeX RDF
16	Tiantian Liu, Chao Zhou, Huimin Wang, Hongyu Zhao 0003, Tao Wang 0067	phyloMDA: an R package for phylogeny-aware microbiome data analysis.	BMC Bioinform.	2022	DBLP DOI BibTeX RDF
16	Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman 0001, Rifat Shahriyar, M. Sohel Rahman	Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference.	IEEE Trans. Cybern.	2022	DBLP DOI BibTeX RDF
16	Thomas Hoppe 0004, Ulrich Kutschera	Phenotypic plasticity in plasmodial slime molds and molecular phylogeny of terrestrial vs. aquatic species.	Theory Biosci.	2022	DBLP DOI BibTeX RDF
16	Caroline Vernette, Julien Lecubin, Pablo Sánchez, Silvia G. Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Lionel Guidi, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels-Lewis, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hiroyuki Ogata, Nicole Poulton, Stephane Pesant, Christian Sardet, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa, Patrick Wincker, Tom O. Delmont, Eric Pelletier, Magali Lescot	The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
16	Francesco Oteri, Edoardo Sarti, Francesca Nadalin, Alessandra Carbone	iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
16	Håkon Kaspersen, Eve Zeyl Fiskebeck	ALPPACA - A tooL for Prokaryotic Phylogeny And Clustering Analysis.	J. Open Source Softw.	2022	DBLP DOI BibTeX RDF
16	Stefan Ebmeyer, Roelof Dirk Coertze, Fanny Berglund, Erik Kristiansson, D. G. Joakim Larsson	GEnView: a gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and plasmids.	Bioinform.	2022	DBLP DOI BibTeX RDF
16	Nicolas Serge Matthieu Robert, Fatih Sarigol, Elisabeth Zieger, Oleg Simakov	SYNPHONI: scale-free and phylogeny-aware reconstruction of synteny conservation and transformation across animal genomes.	Bioinform.	2022	DBLP DOI BibTeX RDF
16	Hazal Koptagel, Oskar Kviman, Harald Melin, Negar Safinianaini, Jens Lagergren	VaiPhy: a Variational Inference Based Algorithm for Phylogeny.	CoRR	2022	DBLP DOI BibTeX RDF
16	Fahim Faisal, Antonios Anastasopoulos	Phylogeny-Inspired Adaptation of Multilingual Models to New Languages.	CoRR	2022	DBLP DOI BibTeX RDF
16	Kartik Narayan, Harsh Agarwal, Kartik Thakral, Surbhi Mittal, Mayank Vatsa, Richa Singh 0001	DeePhy: On Deepfake Phylogeny.	CoRR	2022	DBLP DOI BibTeX RDF
16	Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Naser Anjum Samudro, Mohammad Saifur Rahman, M. Sohel Rahman	PASTA with many application-aware optimization criteria for alignment based phylogeny inference.	Comput. Biol. Chem.	2022	DBLP DOI BibTeX RDF
16	Rudi Cilibrasi, Paul M. B. Vitányi	Fast Phylogeny of SARS-CoV-2 by Compression.	Entropy	2022	DBLP DOI BibTeX RDF
16	Andonis Gerardos, Nicola Dietler, Anne-Florence Bitbol	Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
16	Paul Zaharias, Martin Grosshauser, Tandy J. Warnow	Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling.	J. Comput. Biol.	2022	DBLP DOI BibTeX RDF
16	Kartik Narayan, Harsh Agarwal, Kartik Thakral, Surbhi Mittal, Mayank Vatsa, Richa Singh 0001	DeePhy: On Deepfake Phylogeny.	IJCB	2022	DBLP DOI BibTeX RDF
16	Fahim Faisal, Antonios Anastasopoulos	Phylogeny-Inspired Adaptation of Multilingual Models to New Languages.	AACL/IJCNLP (1)	2022	DBLP BibTeX RDF
16	Quoc Nguyen, Layla Oesper	An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures.	BIBM	2022	DBLP DOI BibTeX RDF
16	Jyotsna Talreja Wassan, Haiying Wang 0001, Huiru Zheng	A New Phylogeny-Driven Random Forest-Based Classification Approach for Functional Metagenomics.	BIBM	2022	DBLP DOI BibTeX RDF
16	Hazal Koptagel, Oskar Kviman, Harald Melin, Negar Safinianaini, Jens Lagergren	VaiPhy: a Variational Inference Based Algorithm for Phylogeny.	NeurIPS	2022	DBLP BibTeX RDF
16	Veronica Guerrini, Alessio Conte, Roberto Grossi, Gianni Liti, Giovanna Rosone, Lorenzo Tattini	phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering.	WABI	2022	DBLP DOI BibTeX RDF
16	Rafael Oliveira 0009, Saul de Castro Leite, Fernanda Nascimento Almeida	Phylogeny Trees as a Tool to Compare Inference Algorithms of Orthologs.	BSB	2022	DBLP DOI BibTeX RDF
16	Guanghong Zuo	CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool Based on Composition Vectors of Genomes.	Genom. Proteom. Bioinform.	2021	DBLP DOI BibTeX RDF
16	Xilin Yu, Thien Le, Sarah A. Christensen, Erin K. Molloy, Tandy J. Warnow	Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation.	Algorithms Mol. Biol.	2021	DBLP DOI BibTeX RDF
16	Sanket Desai, Sonal Rashmi, Aishwarya Rane, Bhasker Dharavath, Aniket Sawant, Amit Dutt	An integrated approach to determine the abundance, mutation rate and phylogeny of the SARS-CoV-2 genome.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF