Search results for "proteomics"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
32	Yassene Mohammed, Pallab Bhowmick, Sarah A. Michaud, Albert Sickmann, Christoph H. Borchers	Mouse Quantitative Proteomics Knowledgebase: reference protein concentration ranges in 20 mouse tissues using 5000 quantitative proteomics assays.	Bioinform.	2021	DBLP DOI BibTeX RDF
32	Tim O. F. Conrad, Martin Genzel, Nada Cvetkovic, Niklas Wulkow, Alexander B. Leichtle, Jan Vybíral, Gitta Kutyniok, Christof Schütte	Sparse Proteomics Analysis - a compressed sensing-based approach for feature selection and classification of high-dimensional proteomics mass spectrometry data.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
32	Christian Stephan, Martin Eisenacher, Michael Kohl, Helmut E. Meyer	Proteomics Data Collection (ProDaC): Publishing and Collecting Proteomics Data Sets in Public Repositories Using Standard Formats.	Proteome Bioinformatics	2010	DBLP DOI BibTeX RDF
32	John C. Braisted, Srilatha Kuntumalla, Christine Vogel, Edward M. Marcotte, Alan R. Rodrigues, Rong Wang, Shih-Ting Huang, Erik S. Ferlanti, Alexander I. Saeed, Robert D. Fleischmann, Scott N. Peterson, Rembert Pieper	The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
32	Paulo C. Carvalho, Juliana S. G. Fischer, Emily I. Chen, John R. Yates III, Valmir Carneiro Barbosa	PatternLab for proteomics: a tool for differential shotgun proteomics.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
32	Mario Cannataro	Computational proteomics: management and analysis of proteomics data.	Briefings Bioinform.	2008	DBLP DOI BibTeX RDF
32	Ignacio Rojas Ruiz, Héctor Pomares, Olga Valenzuela, José Luis Bernier	Applications in Bio-informatics and Biomedical Engineering.	IWANN (1)	2009	DBLP DOI BibTeX RDF	Bioinformatics, genomics, proteomics, biomedical engineering
32	Jung Eun Shim, Yanhua Jin, Won Suk Lee	A spot-matching framework for improving matching accuracy in protein 2-DE gel image analysis.	IDEAS	2008	DBLP DOI BibTeX RDF	2-DE, pair extension, spot matching, clustering, proteomics, landmark
32	Tuan D. Pham, Dominik Beck, Miriam Brandl, Xiaobo Zhou 0001	Classification of Proteomic Signals by Block Kriging Error Matching.	ICISP	2008	DBLP DOI BibTeX RDF	mass spectral data, block kriging, distortion measures, classification, signal processing, Proteomics
32	Thang V. Pham, Connie R. Jimenez	OplAnalyzer: A Toolbox for MALDI-TOF Mass Spectrometry Data Analysis.	MDA	2008	DBLP DOI BibTeX RDF	bio-marker discovery, MALDI-TOF, OplAnalyzer, data analysis, proteomics, mass spectrometry, differential analysis
32	Frank-Michael Schleif, Thomas Villmann, Barbara Hammer	Supervised Neural Gas for Classification of Functional Data and Its Application to the Analysis of Clinical Proteom Spectra.	IWANN	2007	DBLP DOI BibTeX RDF	supervised neural gas, clinical proteomics, spectra preprocessing, data analysis, functional, wavelet analysis
32	Bernd Fischer 0003, Volker Roth 0001, Joachim M. Buhmann	Time-Series Alignment by Non-negative Multiple Generalized Canonical Correlation Analysis.	WILF	2007	DBLP DOI BibTeX RDF	Time Series Alignment, Proteomics, Canonical Correlation Analysis
32	Frank-Michael Schleif, Thomas Elssner, Markus Kostrzewa, Thomas Villmann, Barbara Hammer	Analysis and Visualization of Proteomic Data by Fuzzy Labeled Self-Organizing Maps.	CBMS	2006	DBLP DOI BibTeX RDF	fuzzy visualization, clinical proteomics, biomarker
32	Bo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu 0001	PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification.	J. Comput. Sci. Technol.	2005	DBLP DOI BibTeX RDF	de novo sequencing, protein post-translational modifications, tandem mass spectrometry, graph algorithm, proteomics
32	Jinyan Li 0001, Limsoon Wong, Qiang Yang 0001	Guest Editors' Introduction: Data Mining in Bioinformatics.	IEEE Intell. Syst.	2005	DBLP DOI BibTeX RDF	data mining, bioinformatics, gene expression, DNA, genomics, proteomics
29	José M. Urquiza, Ignacio Rojas, Héctor Pomares, J. P. Florido, Ginés Rubio, Luis Javier Herrera, José C. Calvo, Julio Ortega Lopera	Method for Prediction of Protein-Protein Interactions in Yeast Using Genomics/Proteomics Information and Feature Selection.	IWANN (1)	2009	DBLP DOI BibTeX RDF
29	Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang	A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics.	RECOMB	2008	DBLP DOI BibTeX RDF
29	Henning Hermjakob	EBI Proteomics Services.	DILS	2008	DBLP DOI BibTeX RDF
29	Panagiotis Tsakanikas, Ilias Manolakos	Effective Denoising of 2D Gel Proteomics Images using Contourlets.	ICIP (6)	2007	DBLP DOI BibTeX RDF
29	Xuegong Zhang	Pattern Recognition in Mining High-Throughput Genomics/Proteomics Data: The New Challenges in Old Questions.	ICCTA	2007	DBLP DOI BibTeX RDF
29	Pan Du 0004, Simon M. Lin, Warren A. Kibbe, Haihui Wang	Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing.	BIBE	2007	DBLP DOI BibTeX RDF
29	Gennady Verkhivker	Computational Proteomics of Biomolecular Interactions in Sequence and Structure Space of the Tyrosine Kinome: Evolutionary Constraints and Protein Conformational Selection Determine Binding Signatures of Cancer Drugs.	WILF	2007	DBLP DOI BibTeX RDF
29	Jorge Andrade, Malin C. Andersen, Lisa Berglund, Jacob Odeberg	Applications of Grid Computing in Genetics and Proteomics.	PARA	2006	DBLP DOI BibTeX RDF
29	Alun D. Preece, Binling Jin, Paolo Missier, Suzanne M. Embury, David Stead, Al Brown	Towards the Management of Information Quality in Proteomics.	CBMS	2006	DBLP DOI BibTeX RDF
29	Paolo Missier, Alun D. Preece, Suzanne M. Embury, Binling Jin, Robert Mark Greenwood, David Stead, Al Brown	Managing Information Quality in e-Science: A Case Study in Proteomics.	ER (Workshops)	2005	DBLP DOI BibTeX RDF
29	Mario Cannataro, Pierangelo Veltri	SpecDB: A Database for Storing and Managing Mass Spectrometry Proteomics Data.	WILF	2005	DBLP DOI BibTeX RDF
29	Clemens Gröpl, Eva Lange, Knut Reinert, Oliver Kohlbacher, Marc Sturm, Christian G. Huber, Bettina M. Mayr, Christoph L. Klein	Algorithms for the Automated Absolute Quantification of Diagnostic Markers in Complex Proteomics Samples.	CompLife	2005	DBLP DOI BibTeX RDF
29	Bruce Randall Donald	Computational and physical modeling challenges in structural molecular biology and proteomics.	Symposium on Solid and Physical Modeling	2005	DBLP DOI BibTeX RDF
29	Robert D. Carr, Giuseppe Lancia	Compact optimization can outperform separation: A case study in structural proteomics.	4OR	2004	DBLP DOI BibTeX RDF	compact optimization, subtour-elimination, Linear programming, contact map
29	Anand Kumar 0005, Barry Smith 0001	Towards a Proteomics Meta-Classification.	BIBE	2004	DBLP DOI BibTeX RDF
29	Zhiyuan Luo 0001, Tony Bellotti, Alex Gammerman	Qualified Predictions for Proteomics Pattern Diagnostics with Confidence Machines.	IDEAL	2004	DBLP DOI BibTeX RDF
29	R. Wilson	Modelling of 2D Gel Electrophoresis Images for Proteomics Databases.	ICPR (1)	2002	DBLP DOI BibTeX RDF
25	Keith Harris, Mark A. Girolami, Harald Mischak	Definition of Valid Proteomic Biomarkers: A Bayesian Solution.	PRIB	2009	DBLP DOI BibTeX RDF	Proteomic biomarkers, classification, feature selection, Bayesian inference, sparsity
25	Jing Wang, Yunquan Zhang, Xianyi Zhang, Xiangzheng Sun, Zelin Hu, Sujun Li, Rong Zeng	QuantWiz: A Parallel Software Package for LC-MS-based Label-Free Protein Quantification.	HPCC	2009	DBLP DOI BibTeX RDF
25	Manos Kalaitzakis, Vangelis Kritsotakis, Pierre Grangeat, Caroline Paulus, Laurent Gerfault, Manuel Perez, Carmen Reina, George Potamias, Manolis Tsiknakis, Dimitris Kafetzopoulos, Pierre-Alain Binz	Proteomic based identification of cancer biomarkers: The LOCCANDIA integrated platform.	BIBE	2008	DBLP DOI BibTeX RDF
25	Xiaoxu Han, Joseph Scazzero	Protein Expression Molecular Pattern Discovery by Nonnegative Principal Component Analysis.	PRIB	2008	DBLP DOI BibTeX RDF	Nonnegative principle component analysis, support vector machine (SVM), sparse coding
25	Stavroula Ventoura, Eugenia G. Giannopoulou, Elias S. Manolakos	ProtCV: A Tool for Extracting, Visualizing and Validating Protein Clusters Using Mass Spectra Peak-Lists.	CBMS	2008	DBLP DOI BibTeX RDF
25	Pingping Sun, Yanan Ma, Yazhuo Wei, Zhiqiang Ma 0003, Linying Lu, Ying Cui, Ping Huang	Application of Improved K-mean Clustering in Predicting Protein-Protein Interactions.	BMEI (1)	2008	DBLP DOI BibTeX RDF	improved K-mean clustering, phylogenetic profile, protein-protein interactions
25	Aristoklis D. Anastasiadis, George D. Magoulas	Analysing the localisation sites of proteins through neural networks ensembles.	Neural Comput. Appl.	2006	DBLP DOI BibTeX RDF	Neural ensembles, Protein localisation, Feedforward neural networks, K-nearest neighbour, Imbalanced datasets
25	Shaoning Pang, Ilkka Havukkala, Nikola K. Kasabov	Two-Class SVM Trees (2-SVMT) for Biomarker Data Analysis.	ISNN (2)	2006	DBLP DOI BibTeX RDF
25	Agnieszka C. Miguel, John F. Keane, Jeffrey Whiteaker, Heidi Zhang, Amanda G. Paulovich	Compression of LC/MS Proteomic Data.	DCC	2006	DBLP DOI BibTeX RDF
25	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Unification of Protein Data and Knowledge Sources.	KES (1)	2006	DBLP DOI BibTeX RDF
25	Shamkant B. Navathe	Bioinformatics databases and applications: a challenging landscape.	ACM Southeast Regional Conference (1)	2005	DBLP DOI BibTeX RDF
25	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Creating a Protein Ontology Resource.	CSB Workshops	2005	DBLP DOI BibTeX RDF	Protein Informatics, Biomedical Systems, Data Integration, Systems Biology, Biomedical Ontologies, Protein Ontology
25	Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri	MS-Analyzer: Intelligent Preprocessing, Management, and Data Mining Analysis of Mass Spectrometry Data on the Grid.	SKG	2005	DBLP DOI BibTeX RDF
25	Lars Linsen, Julia Löcherbach, Matthias Berth, Jörg Bernhardt, Dörte Becher	Differential Protein Expression Analysis via Liquid-Chromatography/Mass-Spectrometry Data Visualization.	IEEE Visualization	2005	DBLP DOI BibTeX RDF
25	Jacques Colinge, Alexandre Masselot, Jérôme Magnin	A Systematic Statistical Analysis of Ion Trap Tandem Mass Spectra in View of Peptide Scoring.	WABI	2003	DBLP DOI BibTeX RDF
25	Pavel A. Pevzner, Vlado Dancík, Chris L. Tang	Mutation-tolerant protein identification by mass-spectrometry.	RECOMB	2000	DBLP DOI BibTeX RDF
19	Dong-Chul Kim, Jean Gao, Chin-Rang Yang	Learning Proteomic Network Structure by a New Hill Climbing Algorithm.	BIBE	2010	DBLP DOI BibTeX RDF	low dose radiation, microarray, proteomics
19	Yiming Yang, Abhay Harpale, Subramaniam Ganapathy	Protein Identification from Tandem Mass Spectra with Probabilistic Language Modeling.	ECML/PKDD (2)	2009	DBLP DOI BibTeX RDF	Information Retrieval, Proteomics
19	Alessandro Carpentiero, Manuela De Leo, Ivan Garcia Romero, Stefano Pozzi Mucelli, Freimut Reuther, Giorgio Stanta, Massimo Tormen, Paolo Ugo, Martina Zamuner	Nanoelectrochemical Immunosensors for Protein Detection.	NanoNet	2009	DBLP DOI BibTeX RDF	Nanoelectrode, electrochemical immunosensor, trastuzumab, voltammetry, electron beam lithography, proteomics
19	Fedor Zhdanov, Vladimir Vovk, Brian Burford, Dmitry Devetyarov, Ilia Nouretdinov, Alex Gammerman	Online Prediction of Ovarian Cancer.	AIME	2009	DBLP DOI BibTeX RDF	Online prediction, aggregating algorithm, proteomics, mass spectrometry, ovarian cancer
19	Shan He 0001, Huanhuan Chen, Xiaoli Li 0002, Xin Yao 0001	Profiling of Mass Spectrometry Data for Ovarian Cancer Detection Using Negative Correlation Learning.	ICANN (2)	2009	DBLP DOI BibTeX RDF	data mining, bioinformatics, proteomics, negative correlation learning
19	Julio J. Valdés, Alan J. Barton, Arsalan S. Haqqani	Analysis of mass spectrometry data of cerebral stroke samples: an evolutionary computation approach to resolve and quantify peptide peaks.	Genet. Program. Evolvable Mach.	2008	DBLP DOI BibTeX RDF	Mass spectroscopy, Genetic algorithms, Evolutionary computation, Differential evolution, Proteomics, Medicine, Model fitting
19	Raf Van de Plas, Bart De Moor, Etienne Waelkens	Discrete wavelet transform-based multivariate exploration of tissue via imaging mass spectrometry.	SAC	2008	DBLP DOI BibTeX RDF	principal component analysis, bioinformatics, imaging, discrete wavelet transform, proteomics, mass spectrometry
19	Christian Fuchsberger, Heidi Hübl, Georg Schäfer, Alexandre Pelzer, Georg Bartsch, Helmut Klocker, Nicola Barbarini, Riccardo Bellazzi, Wolfgang Wieder, Günther Bonn	Analysis and Visualization of Spatial Proteomic Data for Tissue Characterization.	CBMS	2008	DBLP DOI BibTeX RDF	Maldi Imaging, Clustering, Proteomics, Prostate Cancer
19	Tuan D. Pham, Honghui Wang, Xiaobo Zhou 0001, Dominik Beck, Miriam Brandl, Gerard Hoehn, Joseph Azok, Marie-Luise Brennan, Stanley L. Hazen, Stephen T. C. Wong	Classification of Mass Spectrometry Based Protein Markers by Kriging Error Matching.	MDA	2008	DBLP DOI BibTeX RDF	Mass spectrometry data, Bioinformatics, Pattern classification, Proteomics, Geostatistics, Biomarker discovery
19	Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble	Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions.	RECOMB	2007	DBLP DOI BibTeX RDF	peptide identification, retention time, chromatography, machine learning, support vector regression, proteomics, Mass spectrometry
19	Marc Gerhard, Soren-Oliver Deininger, Frank-Michael Schleif	Statistical Classification and Visualization of MALDI-Imaging Data.	CBMS	2007	DBLP DOI BibTeX RDF	maldi imaging, class imaging, clinical proteomics, data analysis
19	Amandeep S. Sidhu, Tharam S. Dillon, Elizabeth Chang 0001	Protein Ontology Project in 2007: Looking Backward and Forward.	CBMS	2007	DBLP DOI BibTeX RDF	Protein Informatics, Data Integration, Bioinformatics, Proteomics, Data Semantics, Biomedical Ontologies, Protein Ontology
19	Frank-Michael Schleif, Thomas Villmann, Barbara Hammer	Analysis of Proteomic Spectral Data by Multi Resolution Analysis and Self-Organizing Maps.	WILF	2007	DBLP DOI BibTeX RDF	fuzzy visualization, clinical proteomics, spectra preprocessing, wavelet analysis, biomarker
19	David C. Wedge, Simon J. Gaskell, Simon J. Hubbard, Douglas B. Kell, King Wai Lau, Claire Eyers	Peptide detectability following ESI mass spectrometry: prediction using genetic programming.	GECCO	2007	DBLP DOI BibTeX RDF	AUROC, classification, genetic programming, proteomics, mass spectrometry, input selection
19	Xiang Chen, Robert F. Murphy	Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions.	BIRD	2007	DBLP DOI BibTeX RDF	Location Proteomics, Pattern Recognition
19	George Lee 0002, Carlos Rodriguez, Anant Madabhushi	An Empirical Comparison of Dimensionality Reduction Methods for Classifying Gene and Protein Expression Datasets.	ISBRA	2007	DBLP DOI BibTeX RDF	classification, principal component analysis, bioinformatics, dimensionality reduction, gene expression, multidimensional scaling, linear discriminant analysis, graph embedding, proteomics, locally linear embedding, Isomap, prostate cancer, lung cancer, ovarian cancer
19	Lars Linsen, Julia Löcherbach, Matthias Berth, Dörte Becher, Jörg Bernhardt	Visual Analysis of Gel-Free Proteome Data.	IEEE Trans. Vis. Comput. Graph.	2006	DBLP DOI BibTeX RDF	Interactive visual exploration, hierarchical data representation, visualization in bioinformatics, proteomics
19	Christiaan V. Henkel, Reno S. Bladergroen, Crina I. A. Balog, André M. Deelder, Tom Head, Grzegorz Rozenberg, Herman P. Spaink	Protein output for DNA computing.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	plasmid computing, DNA computing, proteomics
19	Edward E. Allen, Jacquelyn S. Fetrow, David J. John, Stan J. Thomas	Heuristics for dependency conjectures in proteomic signaling pathways.	ACM Southeast Regional Conference (1)	2005	DBLP DOI BibTeX RDF	glycolysis regulation, heuristics, computational biology, proteomics, signal transduction
19	Habtom W. Ressom, Rency S. Varghese, Daniel Saha, Eduard Orvisky, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman	Particle swarm optimization for analysis of mass spectral serum profiles.	GECCO	2005	DBLP DOI BibTeX RDF	support vector machines, swarm intelligence, proteomics
19	Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble	Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra.	CSB	2005	DBLP DOI BibTeX RDF	charge state, machine learning, support vector machine, proteomics, mass spectrometry
19	Alon Efrat, Frank Hoffmann 0002, Christian Knauer, Klaus Kriegel, Günter Rote, Carola Wenk	Covering with Ellipses.	Algorithmica	2004	DBLP DOI BibTeX RDF	Approximation algorithm, Computational geometry, Set cover, Proteomics, Algorithms and data structures
19	Robin Gras, David Hernández, Patricia Hernandez, Nadine Zangger, Yoann Mescam, Julien Frey, Olivier Martin 0002, Jacques Nicolas, Ron D. Appel	Cooperative Metaheuristics for Exploring Proteomic Data.	Artif. Intell. Rev.	2003	DBLP DOI BibTeX RDF	cooperative metaheuristics, motif inference, evolutionary algorithm, swarm intelligence, multiple sequence alignment, proteomics, protein identification
19	Robert F. Murphy, Meel Velliste, Gregory Porreca	Robust Numerical Features for Description and Classification of Subcellular Location Patterns in Fluorescence Microscope Images.	J. VLSI Signal Process.	2003	DBLP DOI BibTeX RDF	protein localization, subcellular location features, location proteomics, pattern recognition, fluorescence microscopy
19	Vineet Bafna, Nathan Edwards	On de novo interpretation of tandem mass spectra for peptide identification.	RECOMB	2003	DBLP DOI BibTeX RDF	de novo interpretation, tandem mass spectrometry, proteomics
16	Mahsa Babaei, Soheila Kashanian, Huang-teck Lee, Frances Harding	Proteomics techniques in protein biomarker discovery.	Quant. Biol.	2024	DBLP DOI BibTeX RDF
16	Jinze Huang, Yang Zhao, Bo Meng, Ao Lu, Yaoguang Wei, Lianhua Dong, Xiang Fang, Dong An, Xinhua Dai	SEAOP: a statistical ensemble approach for outlier detection in quantitative proteomics data.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
16	Mikaela Koutrouli, Katerina C. Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen	FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data.	Bioinform.	2024	DBLP DOI BibTeX RDF
16	Huangqingbo Sun, Jiayi Li, Robert F. Murphy	Expanding the coverage of spatial proteomics: a machine learning approach.	Bioinform.	2024	DBLP DOI BibTeX RDF
16	Patrizia Vizza, Federica Aracri, Pietro Hiram Guzzi, Marco Gaspari, Pierangelo Veltri, Giuseppe Tradigo	Machine learning pipeline to analyze clinical and proteomics data: experiences on a prostate cancer case.	BMC Medical Informatics Decis. Mak.	2024	DBLP DOI BibTeX RDF
16	Rebekah L. Gundry, Lennart Martens, Magnus Palmblad	Computational Proteomics (Dagstuhl Seminar 23301).	Dagstuhl Reports	2023	DBLP DOI BibTeX RDF
16	Sahar Iravani, Tim O. F. Conrad	An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
16	Jeff Jones, Elliot J. MacKrell, Ting-Yu Wang, Brett Lomenick, Michael L. Roukes, Tsui-Fen Chou	Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
16	Grégoire Prunier, Mehdi Cherkaoui, Albane Lysiak, Olivier Langella, Mélisande Blein-Nicolas, Virginie Lollier, Emile Benoist, Géraldine Jean, Guillaume Fertin, Hélène Rogniaux, Dominique Tessier	Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides.	BMC Bioinform.	2023	DBLP DOI BibTeX RDF
16	Arthur Declercq, Robbin Bouwmeester, Cristina Chiva, Eduard Sabidó, Aurélie Hirschler, Christine Carapito, Lennart Martens, Sven Degroeve, Ralf Gabriels	Updated MS²PIP web server supports cutting-edge proteomics applications.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
16	Timothy J. Thurman, Charity L. Washam, Duah Alkam, Jordan T. Bird, Allen Gies, Kalyani Dhusia, Michael S. Robeson, Stephanie D. Byrum	proteoDA: a package for quantitative proteomics.	J. Open Source Softw.	2023	DBLP DOI BibTeX RDF
16	Charlotte Soneson, Vytautas Iesmantavicius, Daniel Hess, Michael B. Stadler, Jan Seebacher	einprot: flexible, easy-to-use, reproducible workflows for statistical analysis of quantitative proteomics data.	J. Open Source Softw.	2023	DBLP DOI BibTeX RDF
16	Mengbo Li, Gordon K. Smyth	Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Zhenhuan Feng, Peiyang Fang, Hui Zheng, Xiaofei Zhang	DEP2: an upgraded comprehensive analysis toolkit for quantitative proteomics data.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Giovanni Visonà, Diane Duroux, Lucas Miranda, Emese Sükei, Yiran Li, Karsten M. Borgwardt, Carlos G. Oliver	Multimodal learning in clinical proteomics: enhancing antimicrobial resistance prediction models with chemical information.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Elena Krismer, Isabell Bludau, Maximilian T. Strauss, Matthias Mann	AlphaPeptStats: an open-source Python package for automated and scalable statistical analysis of mass spectrometry-based proteomics.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Weiheng Liao, Xuelian Zhang	Patpat: a public proteomics dataset search framework.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Monica T. Dayao, Alexandro Trevino, Honesty Kim, Matthew Ruffalo, H. Blaize D'angio, Ryan Preska, Umamaheswar Duvvuri, Aaron T. Mayer, Ziv Bar-Joseph	Deriving spatial features from in situ proteomics imaging to enhance cancer survival analysis.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Eric Lee, Kevin Chern, Michael Nissen, Xuehai Wang, Chris Huang, Anita K. Gandhi, Alexandre Bouchard-Côté, Andrew P. Weng, Andrew Roth	SpatialSort: a Bayesian model for clustering and cell population annotation of spatial proteomics data.	Bioinform.	2023	DBLP DOI BibTeX RDF
16	Kah Keng Wong	Integrated transcriptomics and proteomics data analysis identifies CDH17 as a key cell surface target in colorectal cancer.	Comput. Biol. Chem.	2023	DBLP DOI BibTeX RDF
16	Walaa Alkady, Khaled A. ElBahnasy, Walaa K. Gad	A diagnostic model for COVID-19 based on proteomics analysis.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Yifan Jin, Addeela Fayyaz, Ayesha Liaqat, Abbas Khan, Abdulrahman Alshammari, Yanjing Wang 0003, Ruo-Xu Gu, Dong-Qing Wei	Proteomics-based vaccine targets annotation and design of subunit and mRNA-based vaccines for Monkeypox virus (MPXV) against the recent outbreak.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
16	Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström	Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
16	Saad M. Abdelwakeel, Ahmed Abdelsamad, Shimaa Mostafa, Mohamed El Soda	Comparative genomics and proteomics analysis on Capsicum species reveals insights about the capsaicin biosynthesis.	NILES	2023	DBLP DOI BibTeX RDF
16	Zu Gao, Yue Zhao, Jiayun Wang, Zhichun Wu, Guangying Lu, Qiaolan Wu, Yuan Wang, Huayun Yu	Mechanisms Research on Benign Prostatic Hyperplasia Intervened by Tong Guan Pill Based on Label Free Proteomics.	BIBM	2023	DBLP DOI BibTeX RDF
16	Shengzhi Lai, Ning Li, Weichuan Yu	Combining Tags of Various Lengths Benefits Peptide Identification in Bottom-up Proteomics.	BIBM	2023	DBLP DOI BibTeX RDF
16	Jillur Rahman Saurav, Mohammad Sadegh Nasr 0001, Helen H. Shang, Paul Koomey, Michael Robben, Manfred Huber, Jon Weidanz, Bríd Ryan, Eytan Ruppin, Peng Jiang, Jacob M. Luber	A SSIM Guided cGAN Architecture For Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels.	CIBCB	2023	DBLP DOI BibTeX RDF