Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Minmei Hou, Piotr Berman, Louxin Zhang, Webb Miller |
Controlling Size When Aligning Multiple Genomic Sequences with Duplications. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Eun-Jong Hong, Tomás Lozano-Pérez |
Protein Side-Chain Placement Through MAP Estimation and Problem-Size Reduction. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Marta Luksza, Boguslaw Kluge, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin |
Efficient Model-Based Clustering for LC-MS Data. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Laxmi Parida |
Gapped Permutation Patterns for Comparative Genomics. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
permutation patterns, whole genome analysis, evolutionary analysis, data mining, clusters, patterns, Pattern discovery, comparative genomics, motifs, labeled trees |
1 | Marco Terzer, Jörg Stelling |
Accelerating the Computation of Elementary Modes Using Pattern Trees. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Lusheng Wang 0001, Yu Lin 0001, Xiaowen Liu |
Approximation Algorithms for Bi-clustering Problems. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Dandan Song, Zhidong Deng |
A Fuzzy Dynamic Programming Approach to Predict RNA Secondary Structure. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Christian Blum 0001, Mateu Yábar Vallès |
New Constructive Heuristics for DNA Sequencing by Hybridization. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Barbara R. Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton |
Imputing Supertrees and Supernetworks from Quartets. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Aaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna |
Procrastination Leads to Efficient Filtration for Local Multiple Alignment. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Augusto F. Vellozo, Carlos E. R. Alves, Alair Pereira do Lago |
Alignment with Non-overlapping Inversions in O(n3)-Time. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Paul A. Jenkins, Rune B. Lyngsø, Jotun Hein |
How Many Transcripts Does It Take to Reconstruct the Splice Graph? |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | István Miklós, Timothy Brooks Paige, Péter Ligeti |
Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Jieping Ye, Ivaylo Ilinkin, Ravi Janardan, Adam Isom |
Multiple Structure Alignment and Consensus Identification for Proteins. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Lukas Burger, Erik van Nimwegen |
A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai |
Phylogenetic Network Inferences Through Efficient Haplotyping. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Dumitru Brinza, Alexander Zelikovsky |
Combinatorial Methods for Disease Association Search and Susceptibility Prediction. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Geir Kjetil Sandve, Magnar Nedland, Øyvind Bø Syrstad, Lars Andreas Eidsheim, Osman Abul, Finn Drabløs |
Accelerating Motif Discovery: Motif Matching on Parallel Hardware. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Hongmei Zhu, Jiaxin Wang, Zehong Yang, Yixu Song |
A Method to Design Standard HMMs with Desired Length Distribution for Biological Sequence Analysis. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Jens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau |
On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter |
Flux-Based vs. Topology-Based Similarity of Metabolic Genes. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Bethany Man-Yee Chan, Joseph Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao |
Linear-Time Haplotype Inference on Pedigrees Without Recombinations. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Philipp Bucher, Bernard M. E. Moret (eds.) |
Algorithms in Bioinformatics, 6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Shuai Cheng Li 0001, Ming Li 0001 |
On the Complexity of the Crossing Contact Map Pattern Matching Problem. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Sérgio A. de Carvalho, Sven Rahmann |
Improving the Layout of Oligonucleotide Microarrays: Pivot Partitioning. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Jeff M. Phillips, Johannes Rudolph, Pankaj K. Agarwal |
Segmenting Motifs in Protein-Protein Interface Surfaces. |
WABI |
2006 |
DBLP DOI BibTeX RDF |
|
1 | Warwick Tucker, Vincent Moulton |
Reconstructing Metabolic Networks Using Interval Analysis. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny |
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Shlomo Moran, Satish Rao, Sagi Snir |
Using Semi-definite Programming to Enhance Supertree Resolvability. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Gang Wu, Jia-Huai You, Guohui Lin |
A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Rita Casadio, Gene Myers (eds.) |
Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Eran Eyal, Dan Halperin |
Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Anthony Labarre |
A New Tight Upper Bound on the Transposition Distance. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Laurent Bréhélin |
Clustering Gene Expression Series with Prior Knowledge. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink |
Rotamer-Pair Energy Calculations Using a Trie Data Structure. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Daniel Dalevi, Devdatt P. Dubhashi |
The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Isaac Elias, Tzvika Hartman |
A 1.375-Approximation Algorithm for Sorting by Transpositions. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Baharak Rastegari, Anne Condon |
Linear Time Algorithm for Parsing RNA Secondary Structure. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot |
Reaction Motifs in Metabolic Networks. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Nora Speer, Christian Spieth, Andreas Zell |
Spectral Clustering Gene Ontology Terms to Group Genes by Function. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers |
Computing the Quartet Distance Between Trees of Arbitrary Degree. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Rune B. Lyngsø, Yun S. Song, Jotun Hein |
Minimum Recombination Histories by Branch and Bound. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko Ukkonen |
A Hidden Markov Technique for Haplotype Reconstruction. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Sèverine Bérard, Anne Bergeron, Cédric Chauve, Christophe Paul |
Perfect Sorting by Reversals Is Not Always Difficult. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Tamir Tuller, Efrat Oron, Erez Makavy, Daniel A. Chamovitz, Benny Chor |
Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Vijaya Ramachandran, Tandy J. Warnow |
Pattern Identification in Biogeography. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Zeshan Peng, H. F. Ting |
An Efficient Reduction from Constrained to Unconstrained Maximum Agreement Subtree. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Yun S. Song, Yufeng Wu, Dan Gusfield |
Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Sebastian Wernicke 0001 |
A Faster Algorithm for Detecting Network Motifs. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Sara C. Madeira, Arlindo L. Oliveira |
A Linear Time Biclustering Algorithm for Time Series Gene Expression Data. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Henry C. M. Leung, Francis Y. L. Chin |
Generalized Planted (l, d)-Motif Problem with Negative Set. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson |
Discovery of Protein Substructures in EM Maps. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
intermediate resolution cryo EM maps, 3D alignment of secondary structures, macromolecular assemblies, Structural bioinformatics |
1 | Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai |
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Gregory Kucherov, Laurent Noé, Mikhail A. Roytberg |
A Unifying Framework for Seed Sensitivity and Its Application to Subset Seeds. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik |
Ortholog Clustering on a Multipartite Graph. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson |
Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: A Search Pruned by Expression. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Philippe Veber, Nicola Yanev, Rumen Andonov, Vincent Poirriez |
Optimal Protein Threading by Cost-Splitting. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nelesen |
A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Markus Bauer 0001, Gunnar W. Klau, Knut Reinert |
Multiple Structural RNA Alignment with Lagrangian Relaxation. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Rudi Cilibrasi, Leo van Iersel, Steven Kelk, John Tromp |
On the Complexity of Several Haplotyping Problems. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Alexander Kister |
The Main Structural Regularities of the Sandwich Proteins. |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens Stoye |
Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI). |
WABI |
2005 |
DBLP DOI BibTeX RDF |
|
1 | Daniel G. Brown 0001, Ian M. Harrower |
A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Inge Jonassen, Junhyong Kim (eds.) |
Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Shunsuke Inenaga, Teemu Kivioja, Veli Mäkinen |
Finding Missing Patterns. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Daniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel |
Phylogenetic Super-networks from Partial Trees. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
partial trees, networks, closure operations, phylogeny, Molecular evolution |
1 | Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano |
Finding Optimal Pairs of Patterns. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Stanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, Li-San Wang |
Genome Identification and Classification by Short Oligo Arrays. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Tanya Y. Berger-Wolf |
Online Consensus and Agreement of Phylogenetic Trees. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Julien Allali, Marie-France Sagot |
Novel Tree Edit Operations for RNA Secondary Structure Comparison. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
edit operation, distance, secondary structure, RNA, tree comparison |
1 | Tzvika Hartman, Roded Sharan |
A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Daniel G. Brown 0001, Alexander K. Hudek |
New Algorithms for Multiple DNA Sequence Alignment. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Behshad Behzadi, Jean-Marc Steyaert |
The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Brona Brejová, Daniel G. Brown 0001, Tomás Vinar |
The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Alberto Apostolico, Cinzia Pizzi |
Monotone Scoring of Patterns with Mismatches: (Extended Abstract). |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Daniel G. Brown 0001 |
Multiple Vector Seeds for Protein Alignment. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Lev Soinov, Alexander Kanapin, Misha Kapushesky |
Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson |
Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunner, Johannes Rudolph |
Local Search Heuristic for Rigid Protein Docking. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Morris Michael, Christoph Dieterich, Jens Stoye |
Suboptimal Local Alignments Across Multiple Scoring Schemes. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Joel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret |
Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Maciej Liskiewicz, Hemant J. Purohit, Dhananjay V. Raje |
Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-Specificity. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Mukund Sundararajan, Michael Brudno, Kerrin S. Small, Arend Sidow, Serafim Batzoglou |
Chaining Algorithms for Alignment of Draft Sequence. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Jens Gramm |
A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Stefan Balev |
Solving the Protein Threading Problem by Lagrangian Relaxation. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
sequence-structure alignment, Lagrangian relaxation and duality, dynamic programming, integer programming, protein structure prediction, protein threading, subgradient optimization |
1 | Yao-Ting Huang, Kui Zhang, Ting Chen 0006, Kun-Mao Chao |
Approximation Algorithms for the Selection of Robust Tag SNPs. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
approximation algorithm, missing data, SNP, haplotype block |
1 | Denis Bertrand, Olivier Gascuel |
Topological Rearrangements and Local Search Method for Tandem Duplication Trees. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini |
Joint Analysis of DNA Copy Numbers and Gene Expression Levels. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Miklós Csürös |
Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract). |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Stanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira |
ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Jingwu He, Alexander Zelikovsky |
Linear Reduction for Haplotype Inference. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
linear independence, Haplotype inference, perfect phylogeny |
1 | Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve |
Reconstructing Ancestral Gene Orders Using Conserved Intervals. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Benny Chor, Tamir Tuller |
Adding Hidden Nodes to Gene Networks (Extended Abstract). |
WABI |
2004 |
DBLP DOI BibTeX RDF |
network expansion, Bayesian networks, compression, maximum likelihood, minimum description length, EM, gene network |
1 | Uri Keich, Niranjan Nagarajan |
A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Alessandro Panconesi, Mauro Sozio |
Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype Reconstruction. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Manikandan Narayanan, Richard M. Karp |
Gapped Local Similarity Search with Provable Guarantees. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Guoliang Li 0002, Tze-Yun Leong, Louxin Zhang |
Translation Initiation Sites Prediction with Mixture Gaussian Models. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Martin Figeac, Jean-Stéphane Varré |
Sorting by Reversals with Common Intervals. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Sing-Hoi Sze, Songjian Lu, Jianer Chen |
Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|
1 | Nathan Edwards, Ross Lippert |
Sequence Database Compression for Peptide Identification from Tandem Mass Spectra. |
WABI |
2004 |
DBLP DOI BibTeX RDF |
|