Search results for "CSB"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Arvind Gupta, Ján Manuch, Ladislav Stacho	Inverse Protein Folding in 2D HP Mode (Extended Abstract).	CSB	2004	DBLP DOI BibTeX RDF	inverse protein folding, protein stability, protein design, HP model
1	Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu 0001	Pathway Mapping with Operon Information: An Integer-Programming Method.	CSB	2004	DBLP DOI BibTeX RDF
1	Paul Gardner-Stephen, Greg Knowles	DASH: Localising Dynamic Programming for Order of Magnitude Faster, Accurate Sequence Alignment.	CSB	2004	DBLP DOI BibTeX RDF
1	Patricia Buendia, Giri Narasimhan	MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies.	CSB	2004	DBLP DOI BibTeX RDF
1	Stephen T. C. Wong	High Content Cellular Analysis and Their Applications.	CSB	2004	DBLP DOI BibTeX RDF
1	Eugene W. Myers	Whole Genome Sequencing, Comparative Genomics, and Systems Biology.	CSB	2004	DBLP DOI BibTeX RDF
1	Samir V. Deshpande, Rabih E. Jabbour, Charles Wick, A. Peter Snyder	Automated and Rapid Bacterial Identification Using LC-Mass Spectrometry with a Relational Database Management System.	CSB	2004	DBLP DOI BibTeX RDF
1	Maulik K. Shah, Hojoon Lee, Stephanie A. Rogers, Jeffrey W. Touchman	An Exhaustive Genome Assembly Algorithm Using K-Mers to Indirectly Perform N-Squared Comparisons in O(N).	CSB	2004	DBLP DOI BibTeX RDF
1	Yingxin Li, Carol A. Heckman, Julie A. Barnes	Nonlinear Modeling on Protein Kinase C(PKC)-Epsilon Inverse Regulation of Stress Fibers in Oncogenically Transformed Cells.	CSB	2004	DBLP DOI BibTeX RDF
1	Jeffrey Stone, Xindong Wu 0001, Marc Greenblatt	An Intelligent Digital Library System for Biologists.	CSB	2004	DBLP DOI BibTeX RDF
1	Rong Chen, Hesham H. Ali	On Gene Prediction by Cross-Species Comparative Sequence Analysis.	CSB	2003	DBLP DOI BibTeX RDF
1	Peter M. Kasson, Vijay S. Pande	Computational Simulation of Lipid Bilayer Reorientation at Gaps.	CSB	2003	DBLP DOI BibTeX RDF
1	Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh	Towards Index-based Similarity Search for Protein Structure Databases.	CSB	2003	DBLP DOI BibTeX RDF	dataset join, indexing, Protein structures, feature vectors
1	Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga	A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors.	CSB	2003	DBLP DOI BibTeX RDF	Codon optimization, immuno-modulatory motifs, multiple pattern matching, longest weighted path
1	Tuan D. Pham	Alignment-Free Sequence Comparison with Vector Quantization and Hidden Markov Models.	CSB	2003	DBLP DOI BibTeX RDF
1	Michael S. Waterman, Yu Zhang 0002	Eulerian Path Methods for Multiple Sequence Alignment.	CSB	2003	DBLP DOI BibTeX RDF
1	Christopher James Langmead, Bruce Randall Donald	3D Structural Homology Detection via Unassigned Residual Dipolar Couplings.	CSB	2003	DBLP DOI BibTeX RDF
1	Richard L. Schiek, Elebeoba E. May	Development of a Massively-Parallel, Biological Circuit Simulator.	CSB	2003	DBLP DOI BibTeX RDF
1	Melanie A. Sutton, Lori Deneke, John Eme, Wayne Bennett, Frank Wray	Development and Assessment of Bioinformatics Tools for Species Conservation and Habitat Management.	CSB	2003	DBLP DOI BibTeX RDF
1	Takashi Kido, Masanori Baba, Hirohito Matsumine, Yoko Higashi, Hirotaka Higuchi, Masaaki Muramatsu	Haplotype Pattern Mining & Classification for detecting disease associated Site.	CSB	2003	DBLP DOI BibTeX RDF
1	Hsiang Chi Huang	An Evolutionary Approach to Finding Schemas for 3-Class Protein Secondary Structure Prediction.	CSB	2003	DBLP DOI BibTeX RDF
1	Mike P. Liang, Douglas L. Brutlag, Russ B. Altman	Automatic Construction of 3D Structural Motifs for Protein Function Prediction.	CSB	2003	DBLP DOI BibTeX RDF
1	Igor B. Kuznetsov, Shelly Rackovsky	Identification of Non-Random Patterns in Structural and Mutational Data: the Case of Prion Protein.	CSB	2003	DBLP DOI BibTeX RDF
1	Derek Lovley	Analysis of the Genetic Potential and Gene Expression of Microbial Communities Involved in the In Situ Bioremediation of Uranium and Harvesting ElectricalEnergy from Organic Matter.	CSB	2003	DBLP DOI BibTeX RDF
1	Vincent Van Buren, Toshiyuki Yoshikawa, Toshio Hamatani, Minoru S. H. Ko	Probe Design for Large-Scale Molecular Biology Applications.	CSB	2003	DBLP DOI BibTeX RDF
1	Yoshiharu Hayashi, Katsuyoshi Sakaguchi, Nao Iwata, Masaki Kobayashi	Molecular Evaluation using Comparative Molecular Interaction Profile Analysis system.	CSB	2003	DBLP DOI BibTeX RDF
1	Wing-Kin Sung, Wah-Heng Lee	Fast and Accurate Probe Selection Algorithm for Large Genomes.	CSB	2003	DBLP DOI BibTeX RDF
1	Jane Razumovskaya, Victor Olman, Dong Xu 0002, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu 0001	A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST.	CSB	2003	DBLP DOI BibTeX RDF
1	Philip E. Bourne	High Performance Computational Biology - Past Progress and Future Promise.	CSB	2003	DBLP DOI BibTeX RDF
1	Shu-Yun Le, Jih-Hsiang Chen, Jacob V. Maizel	Statistical Inference for Well-ordered Structures in Nucleotide Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Yimin Jing, Sami Khuri	Exact and Heuristic Algorithms for the DNA Fragment Assembly Problem.	CSB	2003	DBLP DOI BibTeX RDF
1	Jun S. Liu	BPPS: An Algorithm for Analyzing Protein Sequence Alignments.	CSB	2003	DBLP DOI BibTeX RDF
1	Holger Mauch, Michael J. Melzer, John S. Hu	Genetic Algorithm Approach for the Closest String Problem.	CSB	2003	DBLP DOI BibTeX RDF
1	Russell Schwartz	Haplotype Motifs: An Algorithmic Approach to Locating Evolutionarily Conserved Patterns in Haploid Sequences.	CSB	2003	DBLP DOI BibTeX RDF	dynamic programming, expectation maximization, SNP, significance testing, haplotype block
1	Li-Ching Hsieh, Liaofu Luo, H. C. Lee	Evidence for Growth of Microbial Genomes by Short Segmental Duplications.	CSB	2003	DBLP DOI BibTeX RDF
1	Sven Rahmann	Fast and Sensitive Probe Selection for DNA Chips Using Jumps in Matching Statistics.	CSB	2003	DBLP DOI BibTeX RDF
1	Wojciech Szpankowski, Wenhui Ren, Lukasz Szpankowski	An Optimal DNA Segmentation Based on the MDL Principle.	CSB	2003	DBLP DOI BibTeX RDF
1	Yoko Higashi, Hirotaka Higuchi, Takashi Kido, Hirohito Matsumine, Masanori Baba, Toshihiko Morimoto, Masaaki Muramatsu	SNP Analysis System for Detecting Complex Disease Associated Sites.	CSB	2003	DBLP DOI BibTeX RDF
1	Luonan Chen	Multiple Protein Structure Alignment by Deterministic Annealing.	CSB	2003	DBLP DOI BibTeX RDF
1	Chengpeng Bi, Craig J. Benham	The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics.	CSB	2003	DBLP DOI BibTeX RDF
1	Bailin Hao, Ji Qi	Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition Distance.	CSB	2003	DBLP DOI BibTeX RDF	prokaryote phylogeny, compositional distance, neutral mutations, random background
1	Bill Martin, Robert M. Horton	MageBuilder: A Schema Translation Tool for Generating MAGE-ML from Tabular Microarray Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Dechang Chen, Dong Hua, Jaques Reifman, Xiuzhen Cheng 0001	Gene Selection for Multi-Class Prediction of Microarray Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Werner G. Krebs, Philip E. Bourne	Statistical and Visual Morph Movie Analysis of Crystallographic Mutant Selection Bias in Protein Mutation Resource Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Zhong-Hui Duan, Louis S. Liou, Ting Shi, Joseph A. DiDonato	Application of Singular Value Decomposition and Functional Clustering to Analyzing Gene Expression Profiles of Renal Cell Carcinoma.	CSB	2003	DBLP DOI BibTeX RDF
1	Ghislain Bidaut, Karsten Suhre, Jean-Michel Claverie, Michael F. Ochs	Analysis of Phylogenetic Profiles Using Bayesian Decomposition.	CSB	2003	DBLP DOI BibTeX RDF
1	Can V. Tran, Nelson M. Yang, Milton H. Saier Jr.	TC-DB: An Architecture for Membrane Transport Protein Analysis.	CSB	2003	DBLP DOI BibTeX RDF
1	Shaun Mahony, Terry J. Smith, James O. McInerney, Aaron Golden	A New Approach to Gene Prediction Using the Self-Organizing Map.	CSB	2003	DBLP DOI BibTeX RDF
1	Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz	Local Similarity in RNA Secondary Structures.	CSB	2003	DBLP DOI BibTeX RDF
1	George C. Tseng, Wing Hung Wong	A Method for Tight Clustering: with Application to Microarray.	CSB	2003	DBLP DOI BibTeX RDF
1	Xiang Wan, Dong Xu 0002, Carolyn M. Slupsky, Guohui Lin	Automated Protein NMR Resonance Assignments.	CSB	2003	DBLP DOI BibTeX RDF
1	Yoshihiro Morishita, Kazuyuki Aihara	Noise-Attenuation in Artificial Genetic Networks.	CSB	2003	DBLP DOI BibTeX RDF
1	Sören W. Perrey, Heinrich Brinck, Achim Zielesny	Iterative Rank based Methods for Clustering.	CSB	2003	DBLP DOI BibTeX RDF
1	G. Sampath	A Block Coding Method that Leads to Significantly Lower Entropy Values for the Proteins and Coding Sections of Haemophilus influenzae.	CSB	2003	DBLP DOI BibTeX RDF
1	Yuhong Wang, John P. Rose, Bi-Cheng Wang, Dawei Lin	Reconstruction of Ancient Operons From Complete Microbial Genome Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	David Dehoney, Rachel Harte, Yan Lu, Daniel Chin	Using Natural Language Processing and the Gene Ontology to Populate a Structured Pathway Database.	CSB	2003	DBLP DOI BibTeX RDF
1	Eric H. Davidson	The Sea Urchin Endomesoderm Gene Regulatory Network, an Encoded Logic Map for Early Development.	CSB	2003	DBLP DOI BibTeX RDF
1	Steve Racunas, Nigam Shah, Nina V. Fedoroff	A Contradiction-Based Framework for Testing Gene Regulation Hypotheses.	CSB	2003	DBLP DOI BibTeX RDF
1	Zhengchang Su, PhuongAn Dam, Xin Chen 0037, Victor Olman, Tao Jiang 0001, Brian Palenik, Ying Xu 0001	Computational Inference of Regulatory Pathways in Microbes.	CSB	2003	DBLP DOI BibTeX RDF
1	Fang-Rong Hsu, J. F. Chen	Aligning ESTs to Genome Using Multi-Layer Unique Makers.	CSB	2003	DBLP DOI BibTeX RDF
1	Igor Tsukerman	New Computational Methods for Electrostatics in Macromolecular Simulation.	CSB	2003	DBLP DOI BibTeX RDF
1	Qing Dong, Rama Balakrishnan, Gail Binkley, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Eurie L. Hong, Robert S. Nash, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Shuai Weng, David Botstein, J. Michael Cherry	Gene Function, Metabolic Pathways and Comparative Genomics in Yeast.	CSB	2003	DBLP DOI BibTeX RDF
1	Andrea Elaina Grimes, Robert P. Futrelle	Text Pattern Visualization for analysis of biology full text and captions.	CSB	2003	DBLP DOI BibTeX RDF
1	Xutao Deng, Hesham H. Ali	A Computational Approach to Reconstructing Gene Regulatory Networks.	CSB	2003	DBLP DOI BibTeX RDF
1	Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski	Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments.	CSB	2003	DBLP DOI BibTeX RDF
1	Dennis L. Chao, Miles P. Davenport, Stephanie Forrest, Alan S. Perelson	Stochastic Stage-structured Modeling of the Adaptive Immune System.	CSB	2003	DBLP DOI BibTeX RDF
1	Xiaolu Huang, Hesham H. Ali	RCIS: A Common Interval Searching Algorithm for Amino Acid Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Youlian Pan, Fazel Famili	GenericBioMatch: A novel generic pattern match algorithm for biological sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Kaori Ueno-Noto, Keiko Takano, Miki Hara-Yokoyama	Substrate Recognition by Enzymes: a Theoretical Study.	CSB	2003	DBLP DOI BibTeX RDF
1	Jun Huan, Jan F. Prins, Wei Wang 0010, Todd J. Vision	Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss.	CSB	2003	DBLP DOI BibTeX RDF
1	Nigam Shah, Jorge Lepre, Yuhai Tu, Gustavo Stolovitzky	Can We Identify Cellular Pathways Implicated in Cancer Using Gene Expression Data?	CSB	2003	DBLP DOI BibTeX RDF
1	Marilyn Safran, Vered Chalifa-Caspi, Orit Shmueli, Naomi Rosen, Hila Benjamin-Rodrig, Ron Ophir, Itai Yanai, Michael Shmoish, Doron Lancet	The GeneCardsTM Family of Databases: GeneCards, GeneLoc, GeneNote and GeneAnnot.	CSB	2003	DBLP DOI BibTeX RDF
1	Barbara A. Eckman, Kerry Deutsch, Marta Janer, Zoé Lacroix, Louiqa Raschid	A Query Language to Support Scientific Discovery.	CSB	2003	DBLP DOI BibTeX RDF
1	Grant Heffelfinger	An Overview of the Sandia National Laboratories Genomes to Life Project, "Carbon Sequestration in Synechococcus Sp.: From Molecular Machines to Hierarchical Modeling".	CSB	2003	DBLP DOI BibTeX RDF
1	Lincong Wang, Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald	An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings.	CSB	2003	DBLP DOI BibTeX RDF
1	Brendan Mumey, Thomas Angel, Bonnie Kirkpatrick, Brian W. Bailey, P. Hargrave, Algirdas J. Jesaitis, Edward A. Dratz	Mapping Discontinuous Antibody Epitopes to Reveal Protein Structure and Changes in Structure Related to Function.	CSB	2003	DBLP DOI BibTeX RDF
1	Terrence S. T. Mak, Kai-Pui Lam	High Speed GAML-based Phylogenetic Tree Reconstruction Using HW/SW Codesign.	CSB	2003	DBLP DOI BibTeX RDF
1	Zhangjun Fei, Xuemei Tang, Rob Alba, Paxton Payton, James J. Giovannoni	Tomato Expression Database (TED) - An Interactive Management Tool for Tomato Expression Profiling Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Eric P. Xing, Wei Wu 0023, Michael I. Jordan, Richard M. Karp	LOGOS: a modular Bayesian model for de novo motif detection.	CSB	2003	DBLP DOI BibTeX RDF
1	Yunfeng Shan, Evangelos E. Milios, Andrew J. Roger, Christian Blouin, Edward Susko	Automatic Recognition of Regions of Intrinsically Poor Multiple Alignment Using Machine Learning.	CSB	2003	DBLP DOI BibTeX RDF
1	Xue-wen Chen 0002	Gene Selection for Cancer Classification Using Bootstrapped Genetic Algorithms and Support Vector Machines.	CSB	2003	DBLP DOI BibTeX RDF
1	Jean-Michel Claverie	Microbial Functional Genomics: Pulling Together a Variety of Approaches and Concepts.	CSB	2003	DBLP DOI BibTeX RDF
1	Bartosz Wilczynski, Torgeir R. Hvidsten, Andriy Kryshtafovych, Lisa Stubbs, Henryk Jan Komorowski, Krzysztof Fidelis	A rule-based framework for gene regulation pathways discovery.	CSB	2003	DBLP DOI BibTeX RDF
1	Rachel Harte, Yan Lu, Stephen Osborn, David Dehoney, Daniel Chin	Refining the Extraction of Relevant Documents from Biomedical Literature to Create a Corpus for Pathway Text Mining.	CSB	2003	DBLP DOI BibTeX RDF
1	Shoudan Liang	cWINNOWER Algorithm for Finding Fuzzy DNA Motifs.	CSB	2003	DBLP DOI BibTeX RDF
1	Andriy Kryshtafovych, Torgeir R. Hvidsten, Henryk Jan Komorowski, Krzysztof Fidelis	Fold Recognition Using Sequence Fingerprints of Protein Local Substructures.	CSB	2003	DBLP DOI BibTeX RDF
1	Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F. Samatova	An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features.	CSB	2003	DBLP DOI BibTeX RDF	key genome features, oxygenic photosynthetic process, genome comparative analysis, support vector machines
1	Sailu Yellaboina, Prachee Chakhaiyar, Seyed Ehetsham Hasnain, Akash Ranjan	Computational prediction of DtxR regulon-A Dissection of physiological process controlled by DtxR in Corynebacterium species.	CSB	2003	DBLP DOI BibTeX RDF
1	Tanveer Fathima Syeda-Mahmood	Clustering Time-Varying Gene Expression Profiles using Scale-space Signals.	CSB	2003	DBLP DOI BibTeX RDF
1	Mingzhou Song 0001, Stéphane Boissinot, Robert M. Haralick, Ihsin T. Phillips	Estimating Recombination Rate Distribution by Optimal Quantization.	CSB	2003	DBLP DOI BibTeX RDF
1	Taku A. Tokuyasu, Donna Albertson, Dan Pinkel, Ajay N. Jain	Wavelet Transforms for the Analysis of Microarray Experiments.	CSB	2003	DBLP DOI BibTeX RDF
1	Weirong Zhu, Yanwei Niu, Jizhu Lu, Guang R. Gao	Implementing Parallel Hmm-pfam on the EARTH Multithreaded Architecture.	CSB	2003	DBLP DOI BibTeX RDF
1	Carl E. McMillin, Robert M. Horton	The Cybertory Sequence File System for Managing Large DNA Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1		2nd IEEE Computer Society Bioinformatics Conference, CSB 2003, Stanford, CA, USA, August 11-14, 2003	CSB	2003	DBLP BibTeX RDF
1	Seung Yup Lee, Yoshimi Fujitsuka, Shoji Takada, Do Hyun Kim	What makes IgG binding domain of protein L fold up to native state: a simulation study with physical oriented energy functions coupled to topology induced terms.	CSB	2003	DBLP DOI BibTeX RDF
1	Jianchang Ning, Charles N. Moore, J. Clare Nelson	Preliminary Wavelet Analysis of Genomic Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Joseph Gerrein, Armen Kherlopian, Vezen Wu, Mitchell Berman, Alvin Wald	MedfoLink: Bridging the Gap between IT and the Medical Community.	CSB	2003	DBLP DOI BibTeX RDF
1	Shih-Chieh Su, Chia-Hung Yeh, C.-C. Jay Kuo	Genomic Sequence Analysis Using Gap Sequences and Pattern Filtering.	CSB	2003	DBLP DOI BibTeX RDF
1	Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail	Epitope Prediction Algorithms for Peptide based Vaccine Design.	CSB	2003	DBLP DOI BibTeX RDF
1	Stephen Osborn, Scot Kennedy, Daniel Chin	A Flexible Pipeline for Experimental Design, Processing, and Analysis of Microarray Data.	CSB	2003	DBLP DOI BibTeX RDF

Publications at "CSB"( http://dblp.L3S.de/Venues/CSB )