Search results for "DNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
54	David Haussler	Computing how we became human.	STOC	2008	DBLP DOI BibTeX RDF	mammalian evolution, transposons, selection, genomes
52	Urmi Majumder, John H. Reif	Design of a Biomolecular Device That Executes Process Algebra.	DNA	2009	DBLP DOI BibTeX RDF
52	Ken Komiya, Noriko Hirayama, Masayuki Yamamura	An Interface for a Computing Model Using Methylation to Allow Precise Population Control by Quantitative Monitoring.	DNA	2007	DBLP DOI BibTeX RDF
52	Junna Kuramochi, Yasubumi Sakakibara	Intensive In Vitro Experiments of Implementing and Executing Finite Automata in Test Tube.	DNA	2005	DBLP DOI BibTeX RDF
52	Masahito Yamamoto, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe, Azuma Ohuchi	Solutions of Shortest Path Problems by Concentration Control.	DNA	2001	DBLP DOI BibTeX RDF
52	Julia Khodor, David K. Gifford	Programmed Mutagenesis Is a Universal Model of Computation.	DNA	2001	DBLP DOI BibTeX RDF
52	Miki Hirabayashi, Hirotada Ohashi, Tai Kubo	Experimental Validation of the Transcription-Based Diagnostic Automata with Quantitative Control by Programmed Molecules.	DNA	2007	DBLP DOI BibTeX RDF	nucleic acid detection systems, molecular programming, autonomous diagnostic devices, molecular circuits, DNA computing, Biomolecular computing
51	Boya Wang, Cameron T. Chalk, David Soloveichik	SIMD\|\|DNA: Single Instruction, Multiple Data Computation with DNA Strand Displacement Cascades.	DNA	2019	DBLP DOI BibTeX RDF
51	Nikhil Gopalkrishnan, Harish Chandran, John H. Reif	High-Fidelity DNA Hybridization Using Programmable Molecular DNA Devices.	DNA	2010	DBLP DOI BibTeX RDF
51	Hiroto Sakai, Yusuke Ogura, Jun Tanida	Reversible Transition of Photonic DNA Automaton Using Hairpin-DNA Responding to a Single Kind of Photonic Signal.	DNA	2010	DBLP DOI BibTeX RDF
51	Bernard Yurke, David Y. Zhang	A Clocked DNA-Based Replicator.	DNA	2004	DBLP DOI BibTeX RDF
51	Qinru Qiu, Daniel J. Burns, Prakash Mukre, Qing Wu 0002	Hardware acceleration of multi-deme genetic algorithm for the application of DNA codeword searching.	GECCO	2007	DBLP DOI BibTeX RDF	genetic algorithm, hardware acceleration, DNA
51	Sanjeev Baskiyar	Simulating DNA Computing.	HiPC	2002	DBLP DOI BibTeX RDF	Simulation, Parallel Computing, DNA, Hamiltonian path, Educational tool
50	Ankit Agrawal 0001, Xiaoqiu Huang 0001	DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratio.	EIT	2008	DBLP DOI BibTeX RDF
50	Tri Basuki Kurniawan, Noor Khafifah Khalid, Zuwairie Ibrahim, Marzuki Khalid, Martin Middendorf	Evaluation of Ordering Methods for DNA Sequence Design Based on Ant Colony System.	Asia International Conference on Modelling and Simulation	2008	DBLP DOI BibTeX RDF
50	Changchuan Yin, Stephen S.-T. Yau	Numerical representation of DNA sequences based on genetic code context and its applications in periodicity analysis of genomes.	CIBCB	2008	DBLP DOI BibTeX RDF
50	Jin Wook Kim, Eunsang Kim, Kunsoo Park	Fast Matching Method for DNA Sequences.	ESCAPE	2007	DBLP DOI BibTeX RDF
50	Aili Han, Daming Zhu	A New DNA-Based Approach to Solve the Maximum Weight Clique Problem.	ICIC (3)	2006	DBLP DOI BibTeX RDF
50	Aili Han, Daming Zhu	DNA Computing Model for the Minimum Spanning Tree Problem.	SYNASC	2006	DBLP DOI BibTeX RDF
50	Olgica Milenkovic, Navin Kashyap	On the Design of Codes for DNA Computing.	WCC	2005	DBLP DOI BibTeX RDF
50	Zhiquan Frank Qiu, Mi Lu	A Surface-Based DNA Algorithm for the Expansion of Symbolic Determinants.	IPDPS Workshops	2000	DBLP DOI BibTeX RDF
50	Sergio Díaz, Juan Luis Esteban, Mitsunori Ogihara	A DNA-Based Random Walk Method for Solving k-SAT.	DNA Computing	2000	DBLP DOI BibTeX RDF
50	Matteo Cavaliere, Natasa Jonoska, Peter Leupold	DNA splicing: computing by observing.	Nat. Comput.	2009	DBLP DOI BibTeX RDF	Splicing, Observer, Formal languages, DNA computing
50	Ying Zhu, Yongsheng Ding, Wanggen Li, Gregory Kemp	A proposed modularized DNA computer, based on biochips.	GEC Summit	2009	DBLP DOI BibTeX RDF	modularized, DNA computer, instruction set architecture, biochips, upgradeable
50	Akio Nishikawa, Satsuki Yaegashi, Fumiaki Tanaka, Kazumasa Ohtake, Masami Hagiya	Multi-fueled approach to DNA nano-robotics.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Azobenzene, DNA Nano-robotics, i-Motif, Light fuel, Multi-fueled approach, pH Fuel, Thermal fuel
50	Nevenka Dimitrova, Yee Him Cheung, Michael Q. Zhang	Analysis and visualization of DNA spectrograms: open possibilities for the genome research.	ACM Multimedia	2006	DBLP DOI BibTeX RDF	DNA spectrogram, genome analysis, fourier transform
50	Gergely Korodi, Ioan Tabus	An efficient normalized maximum likelihood algorithm for DNA sequence compression.	ACM Trans. Inf. Syst.	2005	DBLP DOI BibTeX RDF	Approximate sequence matching, DNA compression, normalized maximum likelihood model
50	Susannah Gal, Nancy Monteith, Anthony J. Macula	Successful preparation and analysis of a 5-site 2-variable DNA library.	Nat. Comput.	2009	DBLP DOI BibTeX RDF	Birthday Problem analysis, DNA code design, Parallel overlap assembly, Bayesian approach, DNA hybridization
50	Christiaan V. Henkel, Grzegorz Rozenberg, Herman P. Spaink	Application of Mismatch Detection Methods in DNA Computing.	Nat. Comput.	2006	DBLP DOI BibTeX RDF	mismatch detection, mutation detection, DNA computing, DNA hybridization
50	Zhipeng Cai 0001, Maysam Heydari, Guohui Lin	Clustering Binary Oligonucleotide Fingerprint Vectors for DNA Clone Classification Analysis.	J. Comb. Optim.	2005	DBLP DOI BibTeX RDF	DNA array, oligonucleotide fingerprinting, DNA clone classification, clustering, combinatorial optimization, A* search, evaluation function
50	Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Petra Schuurman, Gerhard J. Woeginger	DNA Sequencing, Eulerian Graphs, and the Exact Perfect Matching Problem.	WG	2002	DBLP DOI BibTeX RDF	computational complexity, graph theory, computational biology, DNA computing, DNA sequencing
49	Alessandra Carbone, Nadrian C. Seeman	Coding and geometrical shapes in nanostructures: A fractal DNA-assembly.	Nat. Comput.	2003	DBLP DOI BibTeX RDF	coding of tiles, DNA assembly, geometry of tiles, Sierpinski fractals, tiling, DNA nanotechnology, DNA molecules
49	Natasa Jonoska, Gregory L. McColm, Ana Staninska	Spectrum of a Pot for DNA Complexes.	DNA	2006	DBLP DOI BibTeX RDF
49	Sudheer Sahu, Bei Wang 0001, John H. Reif	A Framework for Modeling DNA Based Molecular Systems.	DNA	2006	DBLP DOI BibTeX RDF
49	Kaoru Onodera, Takashi Yokomori	Linearizer and Doubler : Two Mappings to Unify Molecular Computing Models Based on DNA Complementarity.	DNA	2005	DBLP DOI BibTeX RDF
49	Michael S. Livstone, Laura F. Landweber	Mathematical Considerations in the Design of Microreactor-Based DNA Computers.	DNA	2003	DBLP DOI BibTeX RDF
49	Hiroki Uejima, Masami Hagiya	Analyzing Secondary Structure Transition Paths of DNA/RNA Molecules.	DNA	2003	DBLP DOI BibTeX RDF
49	Russell J. Deaton, Junghuei Chen, Hong Bi, John A. Rose	A Software Tool for Generating Non-crosshybridizing Libraries of DNA Oligonucleotides.	DNA	2002	DBLP DOI BibTeX RDF
49	Dan C. Tulpan, Holger H. Hoos, Anne Condon	Stochastic Local Search Algorithms for DNA Word Design.	DNA	2002	DBLP DOI BibTeX RDF
49	Phiset Sa-Ardyen, Natasa Jonoska, Nadrian C. Seeman	Self-assembling DNA Graphs.	DNA	2002	DBLP DOI BibTeX RDF
49	David Harlan Wood, Hong Bi, Steven Orla Kimbrough, Dong-Jun Wu, Junghuei Chen	DNA Starts to Learn Poker.	DNA	2001	DBLP DOI BibTeX RDF
49	John H. Reif, Thomas H. LaBean, Michael Pirrung, Vipul S. Rana, Bo Guo, Carl Kingsford, Gene S. Wickham	Experimental Construction of Very Large Scale DNA Databases with Associative Search Capability.	DNA	2001	DBLP DOI BibTeX RDF
49	Yusuke Nakagawa, Katsuyuki Yugi, Kenji Tsuge, Mitsuhiro Itaya, Hiroshi Yanagawa, Yasubumi Sakakibara	Operon Structure Optimization by Random Self-assembly.	DNA	2008	DBLP DOI BibTeX RDF
49	Florent Becker, Eric Rémila, Nicolas Schabanel	Time Optimal Self-assembly for 2D and 3D Shapes: The Case of Squares and Cubes.	DNA	2008	DBLP DOI BibTeX RDF	Time Optimal Construction, 2D and 3D Discrete Geometry, Tilings, Self-assembling
49	Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg	Parallelism in Gene Assembly.	DNA	2004	DBLP DOI BibTeX RDF
49	Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak Zhang, Tai Hyun Park	Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly.	DNA	2004	DBLP DOI BibTeX RDF
49	Matteo Cavaliere, Natasa Jonoska, Sivan Yogev, Ron Piran, Ehud Keinan, Nadrian C. Seeman	Biomolecular Implementation of Computing Devices with Unbounded Memory.	DNA	2004	DBLP DOI BibTeX RDF
49	Kenichi Wakabayashi, Masayuki Yamamura	A Design for Cellular Evolutionary Computation by Using Bacteria.	DNA	2004	DBLP DOI BibTeX RDF
48	Tianding Chen	A Novel Biology-Based Reversible Data Hiding Fusion Scheme.	FAW	2007	DBLP DOI BibTeX RDF
48	Ken Komiya, Kensaku Sakamoto, Hidetaka Gouzu, Shigeyuki Yokoyama, Masanori Arita, Akio Nishikawa, Masami Hagiya	Successive State Transitions with I/O Interface by Molecules.	DNA Computing	2000	DBLP DOI BibTeX RDF
47	Frank Stajano, Lucia Bianchi, Pietro Liò, Douwe Korff	Forensic genomics: kin privacy, driftnets and other open questions.	WPES	2008	DBLP DOI BibTeX RDF	cold and hot hits, dna database, forensic genomics, human genome project, kin privacy, data protection, informational privacy
47	Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi, Satsuki Yaegashi, Masami Hagiya	Unravel four hairpins!	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Molecular machine, DNA computing, Molecular computing, DNA nanotechnology, Molecular memory
47	Yanfeng Wang, Guangzhao Cui, Bu-Yi Huang, Linqiang Pan, Xuncai Zhang	DNA Computing Processor: An Integrated Scheme Based on Biochip Technology for Performing DNA Computing.	ICIC (3)	2006	DBLP DOI BibTeX RDF
47	Soo-Yong Shin, In-Hee Lee, Dongmin Kim, Byoung-Tak Zhang	Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing.	IEEE Trans. Evol. Comput.	2005	DBLP DOI BibTeX RDF
46	Joseph Ibershoff, Jerzy W. Jaromczyk, Danny van Noort	Simulations of Microreactors: The Order of Things.	DNA	2006	DBLP DOI BibTeX RDF
46	Byoung-Tak Zhang, Ha-Young Jang	Molecular Learning of wDNF Formulae.	DNA	2005	DBLP DOI BibTeX RDF
46	Yuliy M. Baryshnikov, Edward G. Coffman Jr., Nadrian C. Seeman, Teddy Yimwadsana	Self-correcting Self-assembly: Growth Models and the Hammersley Process.	DNA	2005	DBLP DOI BibTeX RDF
46	David Harlan Wood, Catherine L. Taylor Clelland, F. Carter Bancroft	Universal Biochip Readout of Directed Hamiltonian Path Problems.	DNA	2002	DBLP DOI BibTeX RDF
46	Christine E. Heitsch, Anne Condon, Holger H. Hoos	From RNA Secondary Structure to Coding Theory: A Combinatorial Approach.	DNA	2002	DBLP DOI BibTeX RDF
46	John A. Rose, Russell J. Deaton, Masami Hagiya, Akira Suyama	PNA-mediated Whiplash PCR.	DNA	2001	DBLP DOI BibTeX RDF
46	Shankara Narayanan Krishna, Raghavan Rama 0001	Insertion-Deletion P Systems.	DNA	2001	DBLP DOI BibTeX RDF
46	John A. Rose, Russell J. Deaton, Masami Hagiya, Akira Suyama	The Fidelity of the Tag-Antitag System.	DNA	2001	DBLP DOI BibTeX RDF
46	Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg	Patterns of Micronuclear Genes in ciliates.	DNA	2001	DBLP DOI BibTeX RDF
45	Dan Martin, Mohamad A. Eid, Abdulmotaleb El-Saddik	A Haptic Enabled DNA Model.	ISPAN	2008	DBLP DOI BibTeX RDF	Haptics, Distributed Virtual Environments, DNA
45	Erik Winfree	Toward molecular programming with DNA.	ASPLOS	2008	DBLP DOI BibTeX RDF	molecular programming, DNA
45	Philip J. Uren, R. Mike Cameron-Jones, Arthur H. J. Sale	Promoter Prediction Using Physico-Chemical Properties of DNA.	CompLife	2006	DBLP DOI BibTeX RDF	promoter prediction, physico-chemical, support vector machine, SVM, classifier, DNA, transcription
44	Mark Menor, Kyungim Baek, Mahdi Belcaid, Yannick Gingras, Guylaine Poisson	Virus DNA-fragment classification using taxonomic hidden Markov model profiles.	SAC	2010	DBLP DOI BibTeX RDF	machine learning, annotation, viruses, metagenomics
44	Xiao Peng 0001, Prahlad Vadakkepat, Tong Heng Lee	Context-Dependent DNA Coding With Redundancy and Introns.	IEEE Trans. Syst. Man Cybern. Part B	2008	DBLP DOI BibTeX RDF
44	Bin Wang 0005, Qiang Zhang 0008, Rui Zhang	Design of DNA Sequence Based on Improved Genetic Algorithm.	ICIC (1)	2008	DBLP DOI BibTeX RDF
44	Georgios Ch. Sirakoulis	Automatic Design of FPGA Processor for the Backtracking of DNA Sequences Evolution Using Cellular Automata and Genetic Algorithms.	ACRI	2008	DBLP DOI BibTeX RDF
44	Tho Hoan Pham, Tu Bao Ho, Dang Hung Tran, Kenji Satou	Prediction of Histone Modifications in DNA sequences.	BIBE	2007	DBLP DOI BibTeX RDF
44	Lenwood S. Heath, Amrita Pati	Genomic Signatures from DNA Word Graphs.	ISBRA	2007	DBLP DOI BibTeX RDF
44	Nawar Malhis, Kelvin Xi Zhang, B. F. Francis Ouellette	Detecting Protein-Domains DNA-Motifs Association in Saccharomyces cerevisiae Regulatory Networks.	AINA Workshops (1)	2007	DBLP DOI BibTeX RDF	genetic regulation, regulatory motifs, association roles, Gene Ontology, GO, protein domain
44	Yijin Wang, Ming Hsing, Chen Xu, Jiong Li, Mansun Chan	A single chip micro-DNA-array system based on CMOS image sensor technology.	ISCAS	2006	DBLP DOI BibTeX RDF
44	Hassan Masoom, Suprakash Datta, Amir Asif, Lesley Cunningham, Gillian Wu	A Fast Algorithm for Detecting Frame Shifts in DNA sequences.	CIBCB	2006	DBLP DOI BibTeX RDF
44	Yusuke Ogura, Rui Shogenji, Seiji Saito, Jun Tanida	Evaluation of Fundamental Characteristics of Information Systems Based on Photonic DNA Computing.	BioADIT	2006	DBLP DOI BibTeX RDF
44	Mohd Saufee Muhammad, Satomi Ueda, Osamu Ono, Junzo Watada, Marzuki Khalid	Solving Elevator Scheduling Problem Using DNA Computing Approach.	WSTST	2005	DBLP DOI BibTeX RDF
44	Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Renata Cristina Faray Melo, Marcelo Nardelli Pinto Santana, Rodolfo Bezerra Batista	A Performance Evaluation of a Local DNA Sequence Alignment Algorithm on a Cluster of Workstations.	IPDPS	2004	DBLP DOI BibTeX RDF
44	Sebastian Böcker	Sequencing from Compomers: Using Mass Spectrometry for DNA De-Novo Sequencing of 200+ nt.	WABI	2003	DBLP DOI BibTeX RDF
44	Tero Harju, Ion Petre, Grzegorz Rozenberg	Tutorial on DNA Computing and Graph Transformation - Computational Nature of Gene Assembly in Ciliates.	ICGT	2002	DBLP DOI BibTeX RDF
44	Allen P. Mills Jr., M. Turberfield, Andrew J. Turberfield, Bernard Yurke, Philip M. Platzman	Experimental aspects of DNA neural network computation.	Soft Comput.	2001	DBLP DOI BibTeX RDF
44	Xin Chen, Sam Kwong, Ming Li 0001	A compression algorithm for DNA sequences and its applications in genome comparison.	RECOMB	2000	DBLP DOI BibTeX RDF
44	Pavel A. Pevzner, Robert J. Lipshutz	Towards DNA Sequencing Chips.	MFCS	1994	DBLP DOI BibTeX RDF
44	Salih Jabour, Mazen Y. Hamed	Binding of the Zn2+ ion to ferric uptake regulation protein from E. coli and the competition with Fe2+ binding: a molecular modeling study of the effect on DNA binding and conformational changes of Fur.	J. Comput. Aided Mol. Des.	2009	DBLP DOI BibTeX RDF	Iron box, DNA binding, Zinc site, Repressor proteins, Fur
44	Masaru Fukushi, Susumu Horiguchi, Luke Demoracski, Fabrizio Lombardi	An Efficient Framework for Scalable Defect Isolation in Large Scale Networks of DNA Self-Assembly.	J. Electron. Test.	2009	DBLP DOI BibTeX RDF	DNA self-assembled networks, Defect isolation, 1-hop wave expansion, Unsafe node detection, Gross defect model, Broadcast
44	Don Jyh-Fu Jeng, Ikno Kim, Junzo Watada	Bio-soft computing with fixed-length DNA to a group control optimization problem.	Soft Comput.	2008	DBLP DOI BibTeX RDF	Elevator dispatching problem, Evolutionary computation, Combinatorial optimization, Soft computing, DNA computing
44	Clifford R. Johnson	Automating the DNA computer: solving n-Variable 3-SAT problems.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	SAT Computation, DNA Computation, Molecular Computation, Natural Computing
44	Ramiro Garza-Domínguez, Antonio Quiroz-Gutiérrez	Analysis of DNA-Dimer Distribution in Retroviral Genomes Using a Bayesian Networks Induction Technique Based on Genetic Algorithms.	MICAI	2007	DBLP DOI BibTeX RDF	Retroviral Genomes, DNA-dimer, Bayesian Networks, Bioinformatics, Fuzzy Sets
44	Michael S. Livstone, Ron Weiss, Laura F. Landweber	Automated Design and Programming of a Microfluidic DNA Computer.	Nat. Comput.	2006	DBLP DOI BibTeX RDF	algorithm, NP-complete, satisfiability, DNA computing, microfluidics, Boolean expression
44	Constantin Pistol, Alvin R. Lebeck, Chris Dwyer	Design automation for DNA self-assembled nanostructures.	DAC	2006	DBLP DOI BibTeX RDF	nanostructure design, optimized self-assembly, DNA self-assembly
44	Phiset Sa-Ardyen, Natasa Jonoska, Nadrian C. Seeman	Self-assembling DNA graphs.	Nat. Comput.	2003	DBLP DOI BibTeX RDF	junction molecules, ligation, graphs, DNA computing, self-assembly
44	Weng-Long Chang, Minyi Guo, Jesse Wu	Is Cook's Theorem Correct for DNA-Based Computing?	ISHPC	2003	DBLP DOI BibTeX RDF	NP-complete Problem, Molecular Computing, Biological Computing, DNA-based Computing
44	Peter F. Arndt, Christopher B. Burge, Terence Hwa	DNA sequence evolution with neighbor-dependent mutation.	RECOMB	2002	DBLP DOI BibTeX RDF	CpG-methylation-deamination, DNA sequence evolution, single-and dinucleotide frequencies
44	Akio Nishikawa, Masayuki Yamamura, Masami Hagiya	DNA computation simulator based on abstract bases.	Soft Comput.	2001	DBLP DOI BibTeX RDF	Threshold approach, Stochastic approach, Fitting parameters using genetic algorithms, Simulation, DNA computing
44	Mitsunori Ogihara, Animesh Ray	Simulating Boolean Circuits on a DNA Computer.	Algorithmica	1999	DBLP DOI BibTeX RDF	Parallel computation, DNA computation, Boolean circuits
44	Danny van Noort, Laura F. Landweber	Towards a re-programmable DNA computer.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	DNA hybridisation, PDMS valves, control, DNA computing, microfluidics
44	Maryam S. Nuser, Russell J. Deaton	Simulations of DNA Computing with In Vitro Selection.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	DNA word design, in vitro selection, simulation, DNA computing
43	Mohammad Reza Abbasy, Bharanidharan Shanmugam	Enabling Data Hiding for Resource Sharing in Cloud Computing Environments Based on DNA Sequences.	SERVICES	2011	DBLP DOI BibTeX RDF	DNA base pairing rules, complementary rules, DNA binary coding, Cloud Computing, Data hiding, DNA sequence, data confidentiality
43	Joseph Don Berleant	Rational Design of DNA Sequences with Non-Orthogonal Binding Interactions.	DNA	2023	DBLP DOI BibTeX RDF
43	Florent Becker, Shahrzad Heydarshahi	DNA Tile Self-Assembly for 3D-Surfaces: Towards Genus Identification.	DNA	2023	DBLP DOI BibTeX RDF