Search results for "Haplotype"

Hits ?▲	Authors	Title	Venue	Year	Link
17	Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Jens Stoye	Finding All Maximal Perfect Haplotype Blocks in Linear Time.	WABI	2019	DBLP DOI BibTeX RDF
17	M-Hossein Moeinzadeh	De novo and haplotype assembly of polyploid genomes		2019	RDF
17	Dan He 0001, Subrata Saha, Richard Finkers, Laxmi Parida	Efficient algorithms for polyploid haplotype phasing.	BMC Genom.	2018	DBLP DOI BibTeX RDF
17	Thomas K. F. Wong, Louis Ranjard, Yu Lin 0001, Allen G. Rodrigo	HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
17	Maryam Etemadi, Mehri Bagherian, Zhi-Zhong Chen, Lusheng Wang 0001	Better ILP models for haplotype assembly.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
17	Stefano Beretta 0001, Murray Patterson, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni	HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.	BMC Bioinform.	2018	DBLP DOI BibTeX RDF
17	Fei Guo 0001, Dan Wang, Lusheng Wang 0001	Progressive approach for SNP calling and haplotype assembly using single molecular sequencing data.	Bioinform.	2018	DBLP DOI BibTeX RDF
17	Ehsan Motazedi, Dick de Ridder, Richard Finkers, Samantha J. Baldwin, Susan Thomson 0003, Katrina Monaghan, Chris Maliepaard	TriPoly: haplotype estimation for polyploids using sequencing data of related individuals.	Bioinform.	2018	DBLP DOI BibTeX RDF
17	Sun-Ah Kim, Chang-Sung Cho, Suh-Ryung Kim, Shelley B. Bull, Yun Joo Yoo	A new haplotype block detection method for dense genome sequencing data based on interval graph modeling of clusters of highly correlated SNPs.	Bioinform.	2018	DBLP DOI BibTeX RDF
17	Peter Audano, Shashidhar Ravishankar, Fredrik Vannberg	Mapping-free variant calling using haplotype reconstruction from k-mer frequencies.	Bioinform.	2018	DBLP DOI BibTeX RDF
17	Jiao Chen, Yingchao Zhao 0001, Yanni Sun	De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding.	Bioinform.	2018	DBLP DOI BibTeX RDF
17	Gryte Satas, Benjamin J. Raphael	Haplotype phasing in single-cell DNA-sequencing data.	Bioinform.	2018	DBLP DOI BibTeX RDF
17	Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin	Haplotype-aware graph indexes.	CoRR	2018	DBLP BibTeX RDF
17	Mohammad Hossein Olyaee, Ali Reza Khanteymoori	AROHap: An effective algorithm for single individual haplotype reconstruction based on asexual reproduction optimization.	Comput. Biol. Chem.	2018	DBLP DOI BibTeX RDF
17	Slim Karkar, Yann Le Guen, Cathy Philippe, Claire Dandine-Roulland, Morgane Pierre-Jean, Jean-François Mangin, Edith Le Floch, Vincent Frouin	A study of feasibility for genome-wide haplotype association of complex traits in imaging genetics.	BIBM	2018	DBLP DOI BibTeX RDF
17	Jouni Sirén, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin	Haplotype-aware graph indexes.	WABI	2018	DBLP DOI BibTeX RDF
17	Axel Goblet, Steven Kelk, Matús Mihalák, Georgios Stamoulis	On a Fixed Haplotype Variant of the Minimum Error Correction Problem.	COCOON	2018	DBLP DOI BibTeX RDF
17	Luís Felipe I. Cunha, Yoan Diekmann, Luis Antonio Brasil Kowada, Jens Stoye	Identifying Maximal Perfect Haplotype Blocks.	BSB	2018	DBLP DOI BibTeX RDF
17	Nathan Medina-Rodríguez, Ángelo Santana	Allele Imputation and Haplotype Determination from Databases Composed of Nuclear Families.	R J.	2017	DBLP DOI BibTeX RDF
17	Shreepriya Das, Haris Vikalo	Optimal Haplotype Assembly via a Branch-and-Bound Algorithm.	IEEE Trans. Mol. Biol. Multi Scale Commun.	2017	DBLP DOI BibTeX RDF
17	Christian Schäfer, Alexander H. Schmidt, Jürgen Sauter	Hapl-o-Mat: open-source software for HLA haplotype frequency estimation from ambiguous and heterogeneous data.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
17	Sergii Ivakhno, Camilla Colombo, Stephen Tanner, Philip Tedder, Stefano Berri, Anthony J. Cox	tHapMix: simulating tumour samples through haplotype mixtures.	Bioinform.	2017	DBLP DOI BibTeX RDF
17	Jie Zheng 0006, Santiago Rodríguez, Charles Laurin, Denis Baird, Lea Trela-Larsen, Mesut A. Erzurumluoglu, Yi Zheng, Jon White, Claudia Giambartolomei, Delilah Zabaneh, Richard Morris, Meena Kumari, Juan P. Casas, Aroon D. Hingorani, David M. Evans 0002, Tom R. Gaunt, Ian N. M. Day	HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics.	Bioinform.	2017	DBLP DOI BibTeX RDF
17	Sivan Leviyang, Igor Griva, Sergio Ita, Welkin E. Johnson	A penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection.	Bioinform.	2017	DBLP DOI BibTeX RDF
17	Mehmet Tekman, Alan Medlar, Monika Mozere, Robert Kleta, Horia Stanescu	HaploForge: a comprehensive pedigree drawing and haplotype visualization web application.	Bioinform.	2017	DBLP DOI BibTeX RDF
17	Petr Danecek, Shane A. McCarthy	BCFtools/csq: haplotype-aware variant consequences.	Bioinform.	2017	DBLP DOI BibTeX RDF
17	Hongbo Si, Haris Vikalo, Sriram Vishwanath	Information-Theoretic Analysis of Haplotype Assembly.	IEEE Trans. Inf. Theory	2017	DBLP DOI BibTeX RDF
17	Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S. Nobile, Ivan Merelli, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri, Pietro Liò	GenHap: A novel computational method based on genetic algorithms for haplotype assembly.	PeerJ Prepr.	2017	DBLP DOI BibTeX RDF
17	Idan Alter, Loren Gragert, Stephanie Fingerson, Martin Maiers, Yoram Louzoun	HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
17	Qian Zhang, Jingli Wu	基于枚举策略的三倍体个体单体型重建算法 (Triploid Individual Haplotype Reconstruction Algorithm Based on Enumeration Strategy).	计算机科学	2017	DBLP DOI BibTeX RDF
17	German Tischler-Höhle	Haplotype and Repeat Separation in Long Reads.	CIBB	2017	DBLP DOI BibTeX RDF
17	Rogério S. Rosa, Katia S. Guimarães	Accurate Prediction of Haplotype Inference Errors by Feature Extraction.	ISBRA	2017	DBLP DOI BibTeX RDF
17	Abolfazl Hashemi, Banghua Zhu, Haris Vikalo	Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids.	BCB	2017	DBLP DOI BibTeX RDF
17	Sepideh Mazrouee	Combinatorial Algorithms for Haplotype Assembly.		2017	RDF
17	Simone Zaccaria	Inferring Genomic Variants and their Evolution: Combinatorial Optimization for Haplotype Assembly and Quantification of Intra-Tumor Heterogeneity.		2017	RDF
17	Mee Yee Chan, Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao	Haplotype Inference on Pedigrees Without Recombinations.	Encyclopedia of Algorithms	2016	DBLP DOI BibTeX RDF
17	José Fabián Reyes Román, Oscar Pastor 0001, David Roldán Martínez, Francisco Valverde	How to deal with Haplotype data: An Extension to the Conceptual Schema of the Human Genome.	CLEI Electron. J.	2016	DBLP DOI BibTeX RDF
17	Maryam Pourkamali Anaraki, Mehdi Sadeghi	Honey bee-inspired algorithms for SNP haplotype reconstruction problem.	J. Exp. Theor. Artif. Intell.	2016	DBLP DOI BibTeX RDF
17	Zrinka Puljiz, Haris Vikalo	Decoding Genetic Variations: Communications-Inspired Haplotype Assembly.	IEEE ACM Trans. Comput. Biol. Bioinform.	2016	DBLP DOI BibTeX RDF
17	Daniel Taliun, Johann Gamper, Ulf Leser, Cristian Pattaro	Fast Sampling-Based Whole-Genome Haplotype Block Recognition.	IEEE ACM Trans. Comput. Biol. Bioinform.	2016	DBLP DOI BibTeX RDF
17	Jing Tu, Na Lu, Mengqin Duan, An Ju, Xiao Sun 0006, Zuhong Lu	Comparison of the experimental methods in haplotype sequencing via next generation sequencing.	Quant. Biol.	2016	DBLP DOI BibTeX RDF
17	Alan Hodgkinson, Jean-Christophe Grenier, Elias Gbeha, Philip Awadalla	A haplotype-based normalization technique for the analysis and detection of allele specific expression.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
17	Changxiao Cai, Sujay Sanghavi, Haris Vikalo	Structured Low-Rank Matrix Factorization for Haplotype Assembly.	IEEE J. Sel. Top. Signal Process.	2016	DBLP DOI BibTeX RDF
17	Ananda S. Datta, Swati Biswas	Comparison of haplotype-based statistical tests for disease association with rare and common variants.	Briefings Bioinform.	2016	DBLP DOI BibTeX RDF
17	Gerold Jäger, Sharlee Climer, Weixiong Zhang	The complete parsimony haplotype inference problem and algorithms based on integer programming, branch-and-bound and Boolean satisfiability.	J. Discrete Algorithms	2016	DBLP DOI BibTeX RDF
17	Michael Matschiner	Fitchi: haplotype genealogy graphs based on the Fitch algorithm.	Bioinform.	2016	DBLP DOI BibTeX RDF
17	Yuri Pirola, Simone Zaccaria, Riccardo Dondi, Gunnar W. Klau, Nadia Pisanti, Paola Bonizzoni	HapCol: accurate and memory-efficient haplotype assembly from long reads.	Bioinform.	2016	DBLP DOI BibTeX RDF
17	André Lacour, David Ellinghaus, Stefan Schreiber, Andre Franke, Tim Becker	Haplotype synthesis analysis reveals functional variants underlying known genome-wide associated susceptibility loci.	Bioinform.	2016	DBLP DOI BibTeX RDF
17	Kevin Sharp, Warren Kretzschmar, Olivier Delaneau, Jonathan Marchini	Phasing for medical sequencing using rare variants and large haplotype reference panels.	Bioinform.	2016	DBLP DOI BibTeX RDF
17	Daniel Edsgärd, Björn Reinius, Rickard Sandberg	scphaser: haplotype inference using single-cell RNA-seq data.	Bioinform.	2016	DBLP DOI BibTeX RDF
17	Bonnie Kirkpatrick	Haplotype Inference for Pedigrees with Few Recombinations.	CoRR	2016	DBLP BibTeX RDF
17	Chang-Chang Cao, Xiao Sun 0006	Ehapp2: Estimate haplotype frequencies from pooled sequencing data with prior database information.	J. Bioinform. Comput. Biol.	2016	DBLP DOI BibTeX RDF
17	Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria	On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.	J. Comput. Biol.	2016	DBLP DOI BibTeX RDF
17	Zhi-Zhong Chen, Fei Deng, Chao Shen, Yiji Wang, Lusheng Wang 0001	Better ILP-Based Approaches to Haplotype Assembly.	J. Comput. Biol.	2016	DBLP DOI BibTeX RDF
17	Changxiao Cai, Sujay Sanghavi, Haris Vikalo	Structurally-constrained gradient descent for matrix factorization in haplotype assembly problems.	ICASSP	2016	DBLP DOI BibTeX RDF
17	Bonnie Kirkpatrick	Haplotype Inference for Pedigrees with Few Recombinations.	ISBRA	2016	DBLP DOI BibTeX RDF
17	Serghei Mangul, Harry (Taegyun) Yang, Farhad Hormozdiari, Elizabeth Tseng, Alex Zelikovsky, Eleazar Eskin	HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads.	ISBRA	2016	DBLP DOI BibTeX RDF
17	David Edwards	Two molecular measures of relatedness based on haplotype sharing.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
17	Jose Samaniego Castruita, Marie Zepeda Mendoza, Ross Barnett, Nathan Wales, Marcus Gilbert	Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
17	Soyeon Ahn, Haris Vikalo	Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
17	Mitchell J. Machiela, Stephen J. Chanock	LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants.	Bioinform.	2015	DBLP DOI BibTeX RDF
17	Huwenbo Shi, Bogdan Pasaniuc, Kenneth L. Lange	A multivariate Bernoulli model to predict DNaseI hypersensitivity status from haplotype data.	Bioinform.	2015	DBLP DOI BibTeX RDF
17	Rui Chen 0021, Qiang Wei, Xiaowei Zhan, Xue Zhong, James S. Sutcliffe, Nancy J. Cox, Edwin H. Cook Jr., Chun Li, Wei Chen 0074, Bingshan Li	A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis.	Bioinform.	2015	DBLP DOI BibTeX RDF
17	Govinda M. Kamath, Eren Sasoglu, David N. C. Tse	Optimal Haplotype Assembly from High-Throughput Mate-Pair Reads.	CoRR	2015	DBLP BibTeX RDF
17	Noa Slater, Yoram Louzoun, Loren Gragert, Martin Maiers, Ansu Chatterjee, Mark Albrecht	Power Laws for Heavy-Tailed Distributions: Modeling Allele and Haplotype Diversity for the National Marrow Donor Program.	PLoS Comput. Biol.	2015	DBLP DOI BibTeX RDF
17	Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc	A Spatial Haplotype Copying Model with Applications to Genotype Imputation.	J. Comput. Biol.	2015	DBLP DOI BibTeX RDF
17	Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth	WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.	J. Comput. Biol.	2015	DBLP DOI BibTeX RDF
17	Meng-Yi Chen, Chang-En Pu, Fang-Chin Wu, Huei-Yu Lai, Chin-Wen Ho	Rapidly mutating Y-STRs population data in Taiwan and haplotype probability estimation for forensic purposes.	ICCST	2015	DBLP DOI BibTeX RDF
17	Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A. Rosenberg, Vineet Bafna	Haplotype Allele Frequency (HAF) Score: Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Adaptive Allele.	RECOMB	2015	DBLP DOI BibTeX RDF
17	Emily Berger, Deniz Yörükoglu, Bonnie Berger	HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data.	RECOMB	2015	DBLP DOI BibTeX RDF
17	Govinda M. Kamath, Eren Sasoglu, David N. C. Tse	Optimal haplotype assembly from high-throughput mate-pair reads.	ISIT	2015	DBLP DOI BibTeX RDF
17	Emily Rita Berger	Probabilistic Methods for Single Individual Haplotype Reconstruction: HapTree and HapTree-X.		2015	RDF
17	Dorna Kashef Haghighi	Algorithms for decoding cancer genomes : phylogenetic inference and haplotype assembly.		2015	RDF
17	Sandhya Prabhakaran, Mélanie Rey, Osvaldo Zagordi, Niko Beerenwinkel, Volker Roth 0001	HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model.	IEEE ACM Trans. Comput. Biol. Bioinform.	2014	DBLP DOI BibTeX RDF
17	Günter Jäger, Alexander Peltzer, Kay Nieselt	inPHAP: Interactive visualization of genotype and phased haplotype data.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
17	Weihua Pan, Yanan Zhao, Yun Xu, Fengfeng Zhou	WinHAP2: an extremely fast haplotype phasing program for long genotype sequences.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
17	Daniel Taliun, Johann Gamper, Cristian Pattaro	Efficient haplotype block recognition of very long and dense genetic sequences.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
17	Melanie Schirmer, William T. Sloan, Christopher Quince	Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes.	Briefings Bioinform.	2014	DBLP DOI BibTeX RDF
17	Richard Durbin	Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT).	Bioinform.	2014	DBLP DOI BibTeX RDF
17	Meng Wang, Shili Lin	FamLBL: detecting rare haplotype disease association based on common SNPs using case-parent triads.	Bioinform.	2014	DBLP DOI BibTeX RDF
17	Sepideh Mazrouee, Wei Wang 0010	FastHap: fast and accurate single individual haplotype reconstruction using fuzzy conflict graphs.	Bioinform.	2014	DBLP DOI BibTeX RDF
17	Günter Jäger, Alexander Peltzer, Kay Nieselt	inPHAP: Interactive visualization of genotype and phased haplotype data.	CoRR	2014	DBLP BibTeX RDF
17	Hongbo Si, Haris Vikalo, Sriram Vishwanath	Haplotype Assembly: An Information Theoretic View.	CoRR	2014	DBLP BibTeX RDF
17	Bin Wei, Jing Zhao	Corrigendum to "Haplotype inference using a novel binary particle swarm optimization algorithm" [Appl. Soft Comput. 21(2014) 415-422].	Appl. Soft Comput.	2014	DBLP DOI BibTeX RDF
17	Bin Wei, Jing Zhao	Haplotype inference using a novel binary particle swarm optimization algorithm.	Appl. Soft Comput.	2014	DBLP DOI BibTeX RDF
17	Mun-Ho Choi, Seung-Ho Kang, Hyeong-Seok Lim	An improved preprocessing algorithm for haplotype inference by pure parsimony.	J. Bioinform. Comput. Biol.	2014	DBLP DOI BibTeX RDF
17	Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang 0001	A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data.	EURASIP J. Bioinform. Syst. Biol.	2014	DBLP DOI BibTeX RDF
17	Derek Aguiar, Wendy S. W. Wong, Sorin Istrail	Tumor Haplotype Assembly Algorithms for Cancer Genomics.	Pacific Symposium on Biocomputing	2014	DBLP BibTeX RDF
17	Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc	A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation.	RECOMB	2014	DBLP DOI BibTeX RDF
17	Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth	WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads.	RECOMB	2014	DBLP DOI BibTeX RDF
17	Derek Aguiar, Eric M. Morrow, Sorin Istrail	Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts.	RECOMB	2014	DBLP DOI BibTeX RDF
17	Marco Aldinucci, Andrea Bracciali, Tobias Marschall, Murray Patterson, Nadia Pisanti, Massimo Torquati	High-Performance Haplotype Assembly.	CIBB	2014	DBLP DOI BibTeX RDF
17	Hongbo Si, Haris Vikalo, Sriram Vishwanath	Haplotype assembly: An information theoretic view.	ITW	2014	DBLP DOI BibTeX RDF
17	Shreepriya Das, Haris Vikalo	Optimal haplotype assembly with statistical pruning.	GlobalSIP	2014	DBLP DOI BibTeX RDF
17	Xiao Chen, Qinke Peng, LiBin Han, Xiao Wang 0007	A Hopfield neural network based algorithm for haplotype assembly from low-quality data.	IJCNN	2014	DBLP DOI BibTeX RDF
17	Paul M. Bodily, Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, Perry G. Ridge	Haplotype-centered mapping for improved alignments and genetic association studies.	BCB	2014	DBLP DOI BibTeX RDF
17	Melanie Schirmer	Algorithms for viral haplotype reconstruction and bacterial metagenomics : resolving fine-scale variation in next generation sequencing data.		2014	RDF
17	M-Hossein Moeinzadeh, Ehsan Asgarian, Sara Sharifian-R	Neural network-based approaches, solving haplotype reconstruction in MEC and MEC/GI models.	Neural Comput. Appl.	2013	DBLP DOI BibTeX RDF
17	Xiang Wan, Can Yang 0002, Qiang Yang 0001, Hongyu Zhao 0003, Weichuan Yu	HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies.	IEEE ACM Trans. Comput. Biol. Bioinform.	2013	DBLP DOI BibTeX RDF
17	Jiaoyun Yang, Yun Xu, Xiaohui Yao, Guoliang Chen 0001	FNphasing: A Novel Fast Heuristic Algorithm for Haplotype Phasing Based on Flow Network Model.	IEEE ACM Trans. Comput. Biol. Bioinform.	2013	DBLP DOI BibTeX RDF