Search results for "MER"

Hits ?▲	Authors	Title	Venue	Year	Link
19	Ming Xiao, Jiakun Li, Song Hong, Yongtao Yang, Junhua Li, Jianxin Wang 0001, Jian Yang 0009, Wenbiao Ding, Le Zhang 0004	K-mer Counting: memory-efficient strategy, parallel computing and field of application for Bioinformatics.	BIBM	2018	DBLP DOI BibTeX RDF
19	Rick Wertenbroek, Yann Thoma	k-mer Counting with FPGAs and HMC In-Memory Operations.	AHS	2018	DBLP DOI BibTeX RDF
19	Huiren Li, Anand Ramachandran 0001, Deming Chen	GPU Acceleration of Advanced k-mer Counting for Computational Genomics.	ASAP	2018	DBLP DOI BibTeX RDF
19	Tony C. Pan, Sanchit Misra, Srinivas Aluru	Optimizing high performance distributed memory parallel hash tables for DNA k-mer counting.	SC	2018	DBLP BibTeX RDF
19	Lawrence Buckingham, Shlomo Geva, James M. Hogan	Protein database search using compressed k-mer vocabularies.	ADCS	2018	DBLP DOI BibTeX RDF
19	Beakal Gizachew Assefa, Öznur Özkasap	MER-SDN: Machine Learning Framework for Traffic Aware Energy Efficient Routing in SDN.	DASC/PiCom/DataCom/CyberSciTech	2018	DBLP DOI BibTeX RDF
19	Sairam Behera, Sutanu Gayen, Jitender S. Deogun, N. V. Vinodchandran	KmerEstimate: A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage.	BCB	2018	DBLP DOI BibTeX RDF
19	Marius Erbert, Steffen Rechner, Matthias Müller-Hannemann	Gerbil: a fast and memory-efficient k-mer counter with GPU-support.	Algorithms Mol. Biol.	2017	DBLP DOI BibTeX RDF
19	Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan	K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity.	BMC Bioinform.	2017	DBLP DOI BibTeX RDF
19	Xuebing Wu, David P. Bartel	kpLogo: positional k-mer analysis reveals hidden specificity in biological sequences.	Nucleic Acids Res.	2017	DBLP DOI BibTeX RDF
19	Marek Kokot, Maciej Dlugosz, Sebastian Deorowicz	KMC 3: counting and manipulating k-mer statistics.	Bioinform.	2017	DBLP DOI BibTeX RDF
19	João F. Matias Rodrigues, Thomas S. B. Schmidt, Janko Tackmann, Christian von Mering	MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.	Bioinform.	2017	DBLP DOI BibTeX RDF
19	Anuj Gupta, I King Jordan, Lavanya Rishishwar	stringMLST: a fast k-mer based tool for multilocus sequence typing.	Bioinform.	2017	DBLP DOI BibTeX RDF
19	Xu Min, Wanwen Zeng, Ning Chen 0002, Ting Chen 0006, Rui Jiang 0001	Chromatin accessibility prediction via convolutional long short-term memory networks with k-mer embedding.	Bioinform.	2017	DBLP DOI BibTeX RDF
19	Daniel Mapleson, Gonzalo Garcia Accinelli, George Kettleborough, Jonathan Wright, Bernardo J. Clavijo	KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.	Bioinform.	2017	DBLP DOI BibTeX RDF
19	Jochen Kruppa, Erhard van der Vries, Wendy K. Jo, Alexander Postel, Paul Becher, Albert Osterhaus, Klaus Jung	kmerPyramid: an interactive visualization tool for nucleobase and k-mer frequencies.	Bioinform.	2017	DBLP DOI BibTeX RDF
19	Nicola Cadenelli, Jorda Polo, David Carrera 0001	Accelerating K-mer Frequency Counting with GPU and Non-Volatile Memory.	CoRR	2017	DBLP BibTeX RDF
19	Marek Kokot, Maciej Dlugosz, Sebastian Deorowicz	KMC 3: counting and manipulating k-mer statistics.	CoRR	2017	DBLP BibTeX RDF
19	Ritambhara Singh, Arshdeep Sekhon, Kamran Kowsari, Jack Lanchantin, Beilun Wang, Yanjun Qi	GaKCo: a Fast GApped k-mer string Kernel using COunting.	CoRR	2017	DBLP BibTeX RDF
19	Freeson Kaniwa, Venu Madhav Kuthadi, Otlhapile Dinakenyane, Heiko Schroeder	Space-efficient K-MER algorithm for generalized suffix tree.	CoRR	2017	DBLP BibTeX RDF
19	Richard Allen White III, Ajay Panyala, Kevin Glass, Sean Colby, Kurt R. Glaesemann, Christer Jansson, Janet K. Jansson	MerCat: a versatile k-mer counter and diversity estimator for database-independent property analysis obtained from metagenomic and/or metatranscriptomic sequencing data.	PeerJ Prepr.	2017	DBLP DOI BibTeX RDF
19	Kevin D. Murray, Christfried Webers, Cheng Soon Ong, Justin O. Borevitz, Norman Warthmann	kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
19	Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford	Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.	PLoS Comput. Biol.	2017	DBLP DOI BibTeX RDF
19	Elizabeth S. Allman, John A. Rhodes, Seth Sullivant	Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction.	J. Comput. Biol.	2017	DBLP DOI BibTeX RDF
19	David Pellow, Darya Filippova, Carl Kingsford	Improving Bloom Filter Performance on Sequence Data Using k-mer Bloom Filters.	J. Comput. Biol.	2017	DBLP DOI BibTeX RDF
19	Ritambhara Singh, Arshdeep Sekhon, Kamran Kowsari, Jack Lanchantin, Beilun Wang, Yanjun Qi	GaKCo: A Fast Gapped k-mer String Kernel Using Counting.	ECML/PKDD (1)	2017	DBLP DOI BibTeX RDF
19	Yuchun Guo, Kevin Tian, Haoyang Zeng, David K. Gifford	K-mer Set Memory (KSM) Motif Representation Enables Accurate Prediction of the Impact of Regulatory Variants.	RECOMB	2017	DBLP BibTeX RDF
19	Filippo Utro, Daniel E. Platt, Laxmi Parida	A Quantitative and Qualitative Characterization of k-mer Based Alignment-Free Phylogeny Construction.	CIBB	2017	DBLP DOI BibTeX RDF
19	Nicola Cadenelli, Jorda Polo, David Carrera 0001	Accelerating K-mer Frequency Counting with GPU and Non-Volatile Memory.	HPCC/SmartCity/DSS	2017	DBLP DOI BibTeX RDF
19	Nathaniel McVicar, Chih-Ching Lin, Scott Hauck	K-Mer Counting Using Bloom Filters with an FPGA-Attached HMC.	FCCM	2017	DBLP DOI BibTeX RDF
19	Nguyen T. H. Nguyen, Ediz Cetin, Oliver Diessel	Scheduling Considerations for Voter Checking in TMR-MER Systems.	FCCM	2017	DBLP DOI BibTeX RDF
19	Tao Gao, Yanfei Guo, Yanjie Wei, Bingqiang Wang, Yutong Lu, Pietro Cicotti, Pavan Balaji, Michela Taufer	Bloomfish: A Highly Scalable Distributed K-mer Counting Framework.	ICPADS	2017	DBLP DOI BibTeX RDF
19	Bartolomeo Sebastiani, Donatella Malfatti, Martino Giorgini, Stefano Falcinelli	Determination of Volatile Aroma Composition Profiles of Coco de Mèr (Lodoicea Maldivica) Fruit: Analytical Study by HS-SPME and GC/MS Techniques.	ICCSA (3)	2017	DBLP DOI BibTeX RDF
19	Budhi Gunadharma Gautama	Oil-spill monitoring in Indonesia. (L'observation de la nappe de pétrole à la mer d'Indonésie).		2017	RDF
19	Peter Audano	Scalable mapping-free algorithms and K-mer data structures for genomic analysis.		2017	RDF
19	Tieyuan Pan, Li Zhu, Lian Zeng, Takahiro Watanabe, Yasuhiro Takashima	An Online Task Placement Algorithm Based on MER Enumeration for Partially Reconfigurable Device.	IEICE Trans. Fundam. Electron. Commun. Comput. Sci.	2016	DBLP DOI BibTeX RDF
19	Maifuz Ali, Makoto Ando	Fast Estimation of Field in the Shadow Zone for Finite Cylindrical Structures by Modified Edge Representation (MER) in Compact Range Communication.	IEICE Trans. Commun.	2016	DBLP DOI BibTeX RDF
19	Tieyuan Pan, Lian Zeng, Yasuhiro Takashima, Takahiro Watanabe	A Fast MER Enumeration Algorithm for Online Task Placement on Reconfigurable FPGAs.	IEICE Trans. Fundam. Electron. Commun. Comput. Sci.	2016	DBLP DOI BibTeX RDF
19	Veronika B. Dubinkina, Dmitry S. Ischenko, Vladimir Ulyantsev, Alexander V. Tyakht, Dmitry G. Alexeev	Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.	BMC Bioinform.	2016	DBLP DOI BibTeX RDF
19	Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre	Multiple comparative metagenomics using multiset k-mer counting.	PeerJ Comput. Sci.	2016	DBLP DOI BibTeX RDF
19	Ariya Shajii, Deniz Yörükoglu, Yun William Yu, Bonnie Berger	Fast genotyping of known SNPs through approximate k-mer matching.	Bioinform.	2016	DBLP DOI BibTeX RDF
19	Abdullah-Al Mamun 0002, Soumitra Pal 0001, Sanguthevar Rajasekaran	KCMBT: a k-mer Counter based on Multiple Burst Trees.	Bioinform.	2016	DBLP DOI BibTeX RDF
19	Naveen Sivadasan, Rajgopal Srinivasan, Kshama Goyal	Kmerlight: fast and accurate k-mer abundance estimation.	CoRR	2016	DBLP BibTeX RDF
19	Marius Erbert, Steffen Rechner, Matthias Müller-Hannemann	Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support.	CoRR	2016	DBLP BibTeX RDF
19	Jose Nelson Perez Castillo, Miguel Gutierrez, Nelson Enrique Vera Parra	Computational Performance Assessment of k-mer Counting Algorithms.	J. Comput. Biol.	2016	DBLP DOI BibTeX RDF
19	David Pellow, Darya Filippova, Carl Kingsford	Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters.	RECOMB	2016	DBLP DOI BibTeX RDF
19	Elvismary Molina de Armas, Edward Hermann Haeusler, Sérgio Lifschitz, Maristela Terto de Holanda, Waldeyr Mendes Cordeiro da Silva, Paulo Cavalcanti Gomes Ferreira	K-mer Mapping and de Bruijn graphs: The case for velvet fragment assembly.	BIBM	2016	DBLP DOI BibTeX RDF
19	Marius Erbert, Steffen Rechner, Matthias Müller-Hannemann	Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support.	WABI	2016	DBLP DOI BibTeX RDF
19	Yaron Orenstein, David Pellow, Guillaume Marçais, Ron Shamir, Carl Kingsford	Compact Universal k-mer Hitting Sets.	WABI	2016	DBLP DOI BibTeX RDF
19	Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru	Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems.	BCB	2016	DBLP DOI BibTeX RDF
19	Maïté Gouin	Modélisation déterministe d'états de mer à grande échelle en profondeur variable. ( Numerical and deterministic modeling of wave propagation at large scale over a variable bathymetry).		2016	RDF
19	Mohamed Benallal	Analyse d'images satellitaires et développement d'outils informatiques pour modéliser le transfert de CO₂ à l'interface air-mer dans les régions subantarctique et antarctique (secteur Australien). (Remote sensing image Analysis and IT tools development for modeling the transfer of CO2 in the air-sea interface in the sub-Antarctic and Antarctic regions (Australian sector)).		2016	RDF
19	Le Vinh, Tran Lang, Le Binh, Tran Hoai	A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads.	Algorithms Mol. Biol.	2015	DBLP DOI BibTeX RDF
19	Weishu Gong	Discussions on localization capabilities of MSL and MER rovers.	Ann. GIS	2015	DBLP DOI BibTeX RDF
19	Maifuz Ali, Makoto Ando	Fast Estimation of Shadowing Effects in Millimeter-Wave Short Range Communication by Modified Edge Representation (MER).	IEICE Trans. Commun.	2015	DBLP DOI BibTeX RDF
19	Hilde Vinje, Kristian Hovde Liland, Trygve Almøy, Lars Snipen	Comparing K-mer based methods for improved classification of 16S sequences.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
19	Rowan G. Zellers, Robert A. Drewell, Jacqueline M. Dresch	MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding.	BMC Bioinform.	2015	DBLP DOI BibTeX RDF
19	Antonino Fiannaca, Massimo La Rosa, Riccardo Rizzo, Alfonso Urso	A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network.	Artif. Intell. Medicine	2015	DBLP DOI BibTeX RDF
19	Siavash Sheikhizadeh, Dick de Ridder	ACE: accurate correction of errors using K-mer tries.	Bioinform.	2015	DBLP DOI BibTeX RDF
19	Daniel Navarro-Gomez, Jeremy Leipzig, Lishuang Shen, Marie T. Lott, Alphons P. M. Stassen, Douglas C. Wallace, Janey L. Wiggs, Marni J. Falk, Mannis van Oven, Xiaowu Gai	Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier.	Bioinform.	2015	DBLP DOI BibTeX RDF
19	Karel Brinda, Maciej Sykulski, Gregory Kucherov	Spaced seeds improve k-mer-based metagenomic classification.	Bioinform.	2015	DBLP DOI BibTeX RDF
19	Sebastian Deorowicz, Marek Kokot, Szymon Grabowski, Agnieszka Debudaj-Grabysz	KMC 2: fast and resource-frugal k-mer counting.	Bioinform.	2015	DBLP DOI BibTeX RDF
19	Reda Younsi, Dan MacLean	Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs.	Bioinform.	2015	DBLP DOI BibTeX RDF
19	Raffaele Giancarlo, Simona E. Rombo, Filippo Utro	Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning.	Bioinform.	2015	DBLP DOI BibTeX RDF
19	Yang Li 0150, Xifeng Yan	MSPKmerCounter: A Fast and Memory Efficient Approach for K-mer Counting.	CoRR	2015	DBLP BibTeX RDF
19	Rong-Jian Chen, Shi-Jinn Horng, Po-Hsian Huang	Anti-forensic steganography using multi-bit MER with flexible bit location.	Int. J. Ad Hoc Ubiquitous Comput.	2015	DBLP DOI BibTeX RDF
19	A. K. M. Tauhidul Islam, Sakti Pramanik, Xinge Ji, James R. Cole, Qiang Zhu 0001	Back translated peptide K-mer search and local alignment in large DNA sequence databases using BoND-SD-tree indexing.	BIBE	2015	DBLP DOI BibTeX RDF
19	Xiaolei Wang, Wubin Qu, Chenggang Zhang, Dongsheng Zhao	Kmer-indexer: A Fast K-mer Indexing Program.	MedInfo	2015	DBLP DOI BibTeX RDF
19	Pui Kwan Fong, Nung Kion Lee	Improved H3K27ac histone mark prediction using k-mer proximity feature.	CITA	2015	DBLP DOI BibTeX RDF
19	Stefano Falcinelli, Marta Bettoni, Federico Giorgini, Martino Giorgini, Bartolomeo Sebastiani	Chemical Characterization of "Coco de Mer" (Lodoicea Maldivica) Fruit: Phytosterols and Fatty Acids Composition.	ICCSA (2)	2015	DBLP DOI BibTeX RDF
19	Abdullah-Al Mamun 0002, Soumitra Pal 0001, Sanguthevar Rajasekaran	Efficient techniques for k-mer counting.	ICCABS	2015	DBLP DOI BibTeX RDF
19	Michal Hozza, Tomás Vinar, Brona Brejová	How Big is that Genome? Estimating Genome Size and Coverage from k-mer Abundance Spectra.	SPIRE	2015	DBLP DOI BibTeX RDF
19	Marie Piazza	Influence des petites échelles océaniques associées au Gulf Stream sur les interactions air-mer et impact sur la variabilité atmosphérique de l'Atlantique Nord. (Influence of oceanic small-scale variability associated with the Gulf Stream on air-sea interactions and impact on North Atlantic atmospheric variability).		2015	RDF
19	Weiming Li, Bin Ma 0002, Kaizhong Zhang	Optimizing Spaced $k$-mer Neighbors for Efficient Filtration in Protein Similarity Search.	IEEE ACM Trans. Comput. Biol. Bioinform.	2014	DBLP DOI BibTeX RDF
19	John Healy, Desmond Chambers	Approximate k-Mer Matching UsingFuzzy Hash Maps.	IEEE ACM Trans. Comput. Biol. Bioinform.	2014	DBLP DOI BibTeX RDF
19	Aimin Li, Junying Zhang, Zhongyin Zhou	PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
19	Daniel Langenkämper, Alexander Goesmann, Tim W. Nattkemper	AKE - the Accelerated k-mer Exploration web-tool for rapid taxonomic classification and visualization.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
19	Wentian Li, Jan Freudenberg, Pedro Miramontes	Diminishing Return for Increased Mappability with Longer Sequencing Reads: Implications of the k-mer Distributions in the Human Genome.	BMC Bioinform.	2014	DBLP DOI BibTeX RDF
19	Saikat Chatterjee, David Koslicki, Siyuan Dong, Nicolas Innocenti, Lu Cheng 0004, Yueheng Lan, Mikko Vehkaperä, Mikael Skoglund, Lars K. Rasmussen, Erik Aurell, Jukka Corander	SEK: sparsity exploiting k-mer-based estimation of bacterial community composition.	Bioinform.	2014	DBLP DOI BibTeX RDF
19	Rayan Chikhi, Paul Medvedev	Informed and automated k-mer size selection for genome assembly.	Bioinform.	2014	DBLP DOI BibTeX RDF
19	Páll Melsted, Bjarni V. Halldórsson	KmerStream: streaming algorithms for k-mer abundance estimation.	Bioinform.	2014	DBLP DOI BibTeX RDF
19	Peter Audano, Fredrik Vannberg	KAnalyze: a fast versatile pipelined K-mer toolkit.	Bioinform.	2014	DBLP DOI BibTeX RDF
19	Seyed Basir Shariat Razavi, Narjes Sadat Movahedi Tabrizi, Hamidreza Chitsaz, Christina Boucher	HyDA-Vista: Towards Optimal Guided Selection of k-mer Size for Sequence Assembly.	CoRR	2014	DBLP BibTeX RDF
19	Sebastian Deorowicz, Marek Kokot, Szymon Grabowski, Agnieszka Debudaj-Grabysz	KMC 2: Fast and resource-frugal k-mer counting.	CoRR	2014	DBLP BibTeX RDF
19	Kobi Ravid, Ofer Amrani	MER: Mixed Error Reduction Approach for Soft-Decision Decoding of Product Block Codes.	IEEE Trans. Commun.	2014	DBLP DOI BibTeX RDF
19		Correction: Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
19	Mahmoud Ghandi, Dongwon Lee 0005, Morteza Mohammad Noori, Michael A. Beer	Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features.	PLoS Comput. Biol.	2014	DBLP DOI BibTeX RDF
19	Laurent Noé, Donald E. K. Martin	A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and k-Mer Distances.	J. Comput. Biol.	2014	DBLP DOI BibTeX RDF
19	Yun William Yu, Deniz Yörükoglu, Bonnie Berger	Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification.	RECOMB	2014	DBLP DOI BibTeX RDF
19	Chong-Wah Ngo, Yi-Jie Lu, Hao Zhang 0047, Ting Yao, Chun Chet Tan, Lei Pang, Maaike de Boer, John G. M. Schavemaker, Klamer Schutte, Wessel Kraaij	VIREO-TNO @ TRECVID 2014: Multimedia Event Detection and Recounting (MED and MER).	TRECVID	2014	DBLP BibTeX RDF
19	Hernán Darío Vargas Cardona, Mauricio A. Álvarez, Álvaro Ángel Orozco	Sparse representation of MER signals for localizing the Subthalamic Nucleus in Parkinson's disease surgery.	EMBC	2014	DBLP DOI BibTeX RDF
19	Emanuel Weitschek, Fabio Cunial, Giovanni Felici	Classifying Bacterial Genomes with Compact Logic Formulas on k-Mer Frequencies.	DEXA Workshops	2014	DBLP DOI BibTeX RDF
19	Chang Sik Kim, Martyn D. Winn, Vipin Sachdeva, Kirk E. Jordan	K-mer clustering algorithm using a MapReduce approach.	BIBM	2014	DBLP DOI BibTeX RDF
19	Kevin Tang, Yun Tie, Truman Yang, Ling Guan	Multimodal emotion recognition (MER) system.	CCECE	2014	DBLP DOI BibTeX RDF
19	Paul Greenfield, Uwe Röhm	Answering biological questions by querying k-mer databases.	Concurr. Comput. Pract. Exp.	2013	DBLP DOI BibTeX RDF
19	Anthony Fiche, Ali Khenchaf, Jean-Christophe Cexus, Arnaud Martin, Majid Rochdi	Étude statistique du fouillis de mer à partir de lois alpha-stables.	Traitement du Signal	2013	DBLP DOI BibTeX RDF
19	Juhani Kähärä, Harri Lähdesmäki	Evaluating a linear k-mer model for protein-DNA interactions using high-throughput SELEX data.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
19	Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Szymon Grabowski	Disk-based k-mer counting on a PC.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
19	Einar Andreas Rødland	Compact representation of k-mer de Bruijn graphs for genome read assembly.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
19	Alexander Solovyov, W. Ian Lipkin	Centroid based clustering of high throughput sequencing reads based on n-mer counts.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF