Search results for "RNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
27	Claus Brabrand, Robert Giegerich, Anders Møller	Analyzing Ambiguity of Context-Free Grammars.	CIAA	2007	DBLP DOI BibTeX RDF	CFG ambiguity, regular approximation, RNA analysis
27	Shihyen Chen, Kaizhong Zhang	An Improved Algorithm for Tree Edit Distance Incorporating Structural Linearity.	COCOON	2007	DBLP DOI BibTeX RDF	RNA secondary structure comparison, dynamic programming, Tree edit distance
27	Jens Gramm, Jiong Guo, Rolf Niedermeier	Pattern matching for arc-annotated sequences.	ACM Trans. Algorithms	2006	DBLP DOI BibTeX RDF	Arc-annotated sequences, dynamic programming, pattern matching, RNA secondary structure
27	Janina Reeder, Robert Giegerich	A graphical programming system for molecular motif search.	GPCE	2006	DBLP DOI BibTeX RDF	dynamic programming, RNA structure
27	Guillaume Blin, Hélène Touzet	How to Compare Arc-Annotated Sequences: The Alignment Hierarchy.	SPIRE	2006	DBLP DOI BibTeX RDF	arc-annotated sequences, algorithm, NP-hardness, computational biology, edit distance, RNA structures
27	Chien-Feng Huang, Luis M. Rocha	Tracking extrema in dynamic environments using a coevolutionary agent-based model of genotype edition.	GECCO	2005	DBLP DOI BibTeX RDF	RNA editing, editing frequency, genotype editing, agent-based model, dynamic environments, coevolution
27	Miklós Csürös	Maximum-Scoring Segment Sets.	IEEE ACM Trans. Comput. Biol. Bioinform.	2004	DBLP DOI BibTeX RDF	change point estimation, noncoding RNA, thermophiles, Segmentation
27	Mirela Andronescu, Danielle Dees, Laura Slaybaugh, Yinglei Zhao, Anne Condon, Barry Cohen, Steven Skiena	Algorithms for testing that sets of DNA words concatenate without secondary structure.	Nat. Comput.	2003	DBLP DOI BibTeX RDF	testing DNA word sets, RNA secondary structure
20	Adan Gallardo, Bercem Dutagaci	Binding of small molecule inhibitors to RNA polymerase-Spt5 complex impacts RNA and DNA stability.	J. Comput. Aided Mol. Des.	2024	DBLP DOI BibTeX RDF
20	Ken Chen 0006, Yue Zhou, Maolin Ding, Yu Wang, Zhixiang Ren, Yuedong Yang	Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction.	Briefings Bioinform.	2024	DBLP DOI BibTeX RDF
20	Muhammad Shahbaz Khan, Jawad Ahmad 0001, Ahmed Al-Dubai 0001, Baraq Ghaleb, Nikolaos Pitropakis, William J. Buchanan	RNA-TransCrypt: Image Encryption Using Chaotic RNA Encoding, Novel Transformative Substitution, and Tailored Cryptographic Operations.	CoRR	2024	DBLP DOI BibTeX RDF
20	Kuerbannisha Amahong, Wei Zhang, Yu-Hong Liu, Teng Li, Shijie Huang, Lianyi Han, Lin Tao, Feng Zhu 0004	RVvictor: Virus RNA-directed molecular interactions for RNA virus infection.	Comput. Biol. Medicine	2024	DBLP DOI BibTeX RDF
20	Wenbin Ye 0002, Qiwei Lian, Congting Ye, Xiaohui Wu	A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
20	Feng Yu, Huanhuan Qi, Li Gao, Sen Luo, Rebecca Njeri Damaris, Yinggen Ke, Wenhua Wu 0003, Pingfang Yang	Identifying RNA Modifications by Direct RNA Sequencing Reveals Complexity of Epitranscriptomic Dynamics in Rice.	Genom. Proteom. Bioinform.	2023	DBLP DOI BibTeX RDF
20	Diego de S. Lima, Luiz J. A. Amichi, Maria A. Fernandez, Ademir Aparecido Constantino, Flávio A. V. Seixas	NCYPred: A Bidirectional LSTM Network With Attention for Y RNA and Short Non-Coding RNA Classification.	IEEE ACM Trans. Comput. Biol. Bioinform.	2023	DBLP DOI BibTeX RDF
20	Ryan S. McClure, Yvonne Rericha, Katrina M. Waters, Robyn L. Tanguay	3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism.	Frontiers Bioinform.	2023	DBLP DOI BibTeX RDF
20	Petra Kührová, Vojtech Mlýnský, Michal Otyepka, Jirí Sponer, Pavel Banás	Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
20	Riccardo Rozza, Pavel Janos, Alessandra Magistrato	Monovalent Ionic Atmosphere Modulates the Selection of Suboptimal RNA Sequences by Splicing Factors' RNA Recognition Motifs.	J. Chem. Inf. Model.	2023	DBLP DOI BibTeX RDF
20	Francis Yew Fu Tieng, Muhammad Redha Abdullah Zawawi, Nur Alyaa Afifah Md Shahri, Zeti-Azura Mohamed-Hussein, Learn-Han Lee, Nurul-Syakima Ab Mutalib	A Hitchhiker's guide to RNA-RNA structure and interaction prediction tools.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Siqi Chen, Xuhua Yan, Ruiqing Zheng, Min Li 0007	Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Rulan Wang, Chia-Ru Chung, Hsien-Da Huang, Tzong-Yi Lee	Identification of species-specific RNA N6-methyladinosine modification sites from RNA sequences.	Briefings Bioinform.	2023	DBLP DOI BibTeX RDF
20	Grigory Ryabykh, S. V. Kuznetsov, Y. D. Korostelev, A. I. Sigorskikh, A. A. Zharikova, Andrey A. Mironov	RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
20		Correction to: RNA-Chrom: a manually curated analytical database of RNA-chromatin interactome.	Database J. Biol. Databases Curation	2023	DBLP DOI BibTeX RDF
20	Yuxin Zhang, Jie Jiang, Jiongming Ma, Zhen Wei, Yue Wang 0060, Bowen Song, Jia Meng, Guifang Jia, João Pedro de Magalhães, Daniel J. Rigden, Daiyun Hang, Kunqi Chen	DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Volodymyr Tsybulskyi, Egor Semenchenko, Irmtraud M. Meyer	e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Yiran Xu, Jianghui Zhu, Wenze Huang, Kui Xu, Rui Yang, Qiangfeng Cliff Zhang, Lei Sun	PrismNet: predicting protein-RNA interaction using in vivo RNA structural information.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Jia Chen, Jiahao Lin, Yongfei Hu, Meijun Ye, Linhui Yao, Le Wu, Wenhai Zhang, Meiyi Wang, Tingting Deng, Feng Guo, Yan Huang, Bofeng Zhu, Dong Wang 0011	RNADisease v4.0: an updated resource of RNA-associated diseases, providing RNA-disease analysis, enrichment and prediction.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Yunxia Wang, Zhen Chen, Ziqi Pan, Shijie Huang, Jin Liu, Weiqi Xia, Hongning Zhang, Mingyue Zheng, Honglin Li, Tingjun Hou, Feng Zhu 0004	RNAincoder: a deep learning-based encoder for RNA and RNA-associated interaction.	Nucleic Acids Res.	2023	DBLP DOI BibTeX RDF
20	Richard A. Schäfer, Dominik Rabsch, Guillaume E. Scholz, Peter F. Stadler, Wolfgang R. Hess, Rolf Backofen, Jörg Fallmann, Björn Voß	RNA interaction format: a general data format for RNA interactions.	Bioinform.	2023	DBLP DOI BibTeX RDF
20	Emanuele Cavalleri, Alberto Cabri, Mauricio Soto Gomez, Sara Bonfitto, Paolo Perlasca, Jessica Gliozzo, Tiffany J. Callahan, Justin T. Reese, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini, Marco Mesiti	RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules.	CoRR	2023	DBLP DOI BibTeX RDF
20	Yiyan Zhai, Jingyuan Zhang, Zhihong Huang, Rui Shi, Fengying Guo, Fanqin Zhang, Meilin Chen, Yifei Gao, Xiaoyu Tao, Zhengseng Jin, Siyu Guo, Yifan Lin, Peizhi Ye, Jiarui Wu	Single-cell RNA sequencing integrated with bulk RNA sequencing analysis reveals diagnostic and prognostic signatures and immunoinfiltration in gastric cancer.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Xiangan Chen, Xiaofei Yang, Chenhong Li, Xianguang Lin, Wen Zhang	Non-coding RNA identification with pseudo RNA sequences and feature representation learning.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Siyu Guo, Xinkui Liu, Jingyuan Zhang, Zhihong Huang, Peizhi Ye, Jian Shi, Antony Stalin, Chao Wu, Shan Lu, Fanqin Zhang, Yifei Gao, Zhengseng Jin, Xiaoyu Tao, Jiaqi Huang, Yiyan Zhai, Rui Shi, Fengying Guo, Wei Zhou, Jiarui Wu	Integrated analysis of single-cell RNA-seq and bulk RNA-seq unravels T cell-related prognostic risk model and tumor immune microenvironment modulation in triple-negative breast cancer.	Comput. Biol. Medicine	2023	DBLP DOI BibTeX RDF
20	Elena Rivas	RNA covariation at helix-level resolution for the identification of evolutionarily conserved RNA structure.	PLoS Comput. Biol.	2023	DBLP DOI BibTeX RDF
20	Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño	Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction.	SAC	2023	DBLP DOI BibTeX RDF
20	Ekaterina Derevyanchuk, Elizaveta Kulaeva, Leonard Lipovich, Tatiana Shkurat	Coding And Non-coding RNA Network Analysis Of Polycystic Ovary Syndrome: Toward A Competing Endogenous RNA Network.	BIBM	2023	DBLP DOI BibTeX RDF
20	Hrishikesh Dhondge	Structural characterization of RNA binding to RNA recognition motif (RRM) domains using data integration, 3D modeling and molecular dynamic simulation. (Caractérisation structurale de la liaison de l'ARN aux domaines à Motif de Reconnaissance de l'ARN (RRM) à l'aide de l'intégration de données, la modélisation 3D et la simulation dynamique moléculaire).		2023	RDF
20	Jörg Winkler	Algorithms for finding RNA sequence-structure motifs (Algorithmen zum Finden von RNA Sequenz-Struktur-Motiven)		2023	RDF
20	Yi Fang, Xiaoyong Pan, Hong-Bin Shen	Recent Deep Learning Methodology Development for RNA-RNA Interaction Prediction.	Symmetry	2022	DBLP DOI BibTeX RDF
20	Angela Parise, Giada Ciardullo, Mario Prejanò, Aurélien de la Lande, Tiziana Marino	On the Recognition of Natural Substrate CTP and Endogenous Inhibitor ddhCTP of SARS-CoV-2 RNA-Dependent RNA Polymerase: A Molecular Dynamics Study.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Emmanuelle Bignon, Antonio Monari	Modeling the Enzymatic Mechanism of the SARS-CoV-2 RNA-Dependent RNA Polymerase by DFT/MM-MD: An Unusual Active Site Leading to High Replication Rates.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Sehr Naseem-Khan, Madison B. Berger, Emmett M. Leddin, Yazdan Maghsoud, G. Andrés Cisneros	Impact of Remdesivir Incorporation along the Primer Strand on SARS-CoV-2 RNA-Dependent RNA Polymerase.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
20	Chunyan Ao, Quan Zou 0001, Liang Yu	NmRF: identification of multispecies RNA 2'-O-methylation modification sites from RNA sequences.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Timothy Warwick, Sandra Seredinski, Nina M. Krause, Jasleen Kaur Bains, Lara Althaus, James A Oo, Alessandro Bonetti, Anne Dueck, Stefan Engelhardt, Harald Schwalbe, Matthias S. Leisegang, Marcel H. Schulz, Ralf P. Brandes	A universal model of RNA.DNA: DNA triplex formation accurately predicts genome-wide RNA-DNA interactions.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Qiang Kang, Jun Meng, Yushi Luan	RNAI-FRID: novel feature representation method with information enhancement and dimension reduction for RNA-RNA interaction.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Song Zhang, Kuerbannisha Amahong, Chenyang Zhang, Fengcheng Li, Jianqing Gao, Yunqing Qiu, Feng Zhu 0004	RNA-RNA interactions between SARS-CoV-2 and host benefit viral development and evolution during COVID-19 infection.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
20	Paulina Koscielniak, Paulina Glazinska, Marcin Zadworny	OakRootRNADB - a consolidated RNA-seq database for coding and noncoding RNA in roots of pedunculate oak (Quercus robur).	Database J. Biol. Databases Curation	2022	DBLP DOI BibTeX RDF
20	Marcin Magnus	rna-tools.online: a Swiss army knife for RNA 3D structure modeling workflow.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
20	Elan Shatoff, Ralf Bundschuh	dsRBPBind: modeling the effect of RNA secondary structure on double-stranded RNA-protein binding.	Bioinform.	2022	DBLP DOI BibTeX RDF
20	Ruiyan Hou, Yuanghua Huang	Genomic sequences and RNA-binding proteins predict RNA splicing efficiency in various single-cell contexts.	Bioinform.	2022	DBLP DOI BibTeX RDF
20	Martin Gonzalez Buitron, Ronaldo Romario Tunque Cahui, Emilio Garcia-Rios, Layla Hirsh, Gustavo D. Parisi, María Silvina Fornasari, Nicolas Palopoli	CoDNaS-RNA: a database of conformational diversity in the native state of RNA.	Bioinform.	2022	DBLP DOI BibTeX RDF
20	Masaki Tagashira, Kiyoshi Asai	ConsAlifold: considering RNA structural alignments improves prediction accuracy of RNA consensus secondary structures.	Bioinform.	2022	DBLP DOI BibTeX RDF
20	Simone Brogi, Mark Tristan Quimque, Kin Israel Notarte, Jeremiah Gabriel Africa, Jenina Beatriz Hernandez, Sophia Morgan Tan, Vincenzo Calderone, Allan Patrick Macabeo	Virtual Combinatorial Library Screening of Quinadoline B Derivatives against SARS-CoV-2 RNA-Dependent RNA Polymerase.	Comput.	2022	DBLP DOI BibTeX RDF
20	Hongli Ma, Han Wen, Zhiyuan Xue, Guojun Li, Zhaolei Zhang	RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
20	Ignacio Sanchez-Burgos, Jorge R. Espinosa, Jerelle A. Joseph, Rosana Collepardo-Guevara	RNA length has a non-trivial effect in the stability of biomolecular condensates formed by RNA-binding proteins.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
20	Zhaoyu Yang, Xuexuan Li, Weikang Luo, Yao Wu, Tao Tang, Yang Wang 0023	The Involvement of Long Non-coding RNA and Messenger RNA Based Molecular Networks and Pathways in the Subacute Phase of Traumatic Brain Injury in Adult Mice.	Frontiers Neuroinformatics	2022	DBLP DOI BibTeX RDF
20	Kjong-Van Lehmann, André Kahles, Magdalena Murr, Gunnar Rätsch	RNA Instant Quality Check: Alignment-Free RNA-Degradation Detection.	J. Comput. Biol.	2022	DBLP DOI BibTeX RDF
20	Jirachote Karunyakorn, Naruemon Pratanwanich, Monnat Pongpanich, Pornchai Kaewsapsak	A Computational Workflow for Estimation of Short RNA Polyadenylation using Direct RNA Nanopore Sequencing with Polyuridylation.	JCSSE	2022	DBLP DOI BibTeX RDF
20	Cyrille Merleau Nono Saha	From RNA folding to inverse folding: a computational study: Folding and design of RNA molecules		2022	RDF
20	Ting Zhou, Huiwen Wang, Chen Zeng, Yunjie Zhao	RPocket: an intuitive database of RNA pocket topology information with RNA-ligand data resources.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
20	Andrew Prussia, Spandan Chennamadhavuni	Biostructural Models for the Binding of Nucleoside Analogs to SARS-CoV-2 RNA-Dependent RNA Polymerase.	J. Chem. Inf. Model.	2021	DBLP DOI BibTeX RDF
20	Eitamar Tripto, Yaron Orenstein	A comparative analysis of RNA-binding proteins binding models learned from RNAcompete, RNA Bind-n-Seq and eCLIP data.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
20	Aaron Graubert, François Aguet, Arvind Ravi, Kristin G. Ardlie, Gad Getz	RNA-SeQC 2: efficient RNA-seq quality control and quantification for large cohorts.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Hong Su, Zhenling Peng, Jianyi Yang	Recognition of small molecule-RNA binding sites using RNA sequence and structure.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	Yixin Zhao, Noah Dukler, Gilad Barshad, Shushan Toneyan, Charles G. Danko, Adam C. Siepel	Deconvolution of expression for nascent RNA-sequencing data (DENR) highlights pre-RNA isoform diversity in human cells.	Bioinform.	2021	DBLP DOI BibTeX RDF
20	H. Shabeer Ali, P. Prajosh, K. Sreejith, M. Divya Lakshmanan	Conformers of a novel lipopeptide antibiotic, Kannurin inhibits SARS-Cov2 replication via interfering with RNA-dependent-RNA polymerase activation and function.	Int. J. Comput. Biol. Drug Des.	2021	DBLP DOI BibTeX RDF
20	Laila K. Elghoneimy, Muhammad I. Ismail, Frank M. Boeckler, Hassan M. E. Azzazy, Tamer M. Ibrahim	Facilitating SARS CoV-2 RNA-Dependent RNA polymerase (RdRp) drug discovery by the aid of HCV NS5B palm subdomain binders: In silico approaches and benchmarking.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Kosar Sadat Ebrahimi, Mohabbat Ansari, Mahdieh S. Hosseyni Moghaddam, Zohre Ebrahimi, Zohre salehi, Mohsen Shahlaei, Sajad Moradi	In silico investigation on the inhibitory effect of fungal secondary metabolites on RNA dependent RNA polymerase of SARS-CoV-II: A docking and molecular dynamic simulation study.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Sunil Kanti Mondal, Samyabrata Mukhoty, Himangsu Kundu, Subhajit Ghosh, Madhab Kumar Sen, Suvankar Das, Simone Brogi	In silico analysis of RNA-dependent RNA polymerase of the SARS-CoV-2 and therapeutic potential of existing antiviral drugs.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Rahul Singh, Vijay Kumar Bhardwaj, Rituraj Purohit	Potential of turmeric-derived compounds against RNA-dependent RNA polymerase of SARS-CoV-2: An in-silico approach.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Muhammad Arba, Setyanto Tri Wahyudi, Dylan J. Brunt, Nicholas Paradis, Chun Wu	Mechanistic insight on the remdesivir binding to RNA-Dependent RNA polymerase (RdRp) of SARS-cov-2.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
20	Abhisek Dwivedy, Richard Mariadasse, Mohammed Ahmad, Sayan Chakraborty, Deepsikha Kar, Satish Tiwari, Sankar Bhattacharyya, Sudipta Sonar, Shailendra Mani, Prafullakumar Tailor, Tanmay Majumdar, Jeyaraman Jeyakanthan, Bichitra Kumar Biswal	Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
20	Poonam Dhankhar, Vikram Dalal, Viney Kumar	Screening of Severe Acute Respiratory Syndrome Coronavirus 2 RNA-Dependent RNA Polymerase Inhibitors Using Computational Approach.	J. Comput. Biol.	2021	DBLP DOI BibTeX RDF
20	Inemesit A. Udofia, Kofoworola O. Gbayo, Oluwakemi A. Oloba-Whenu, Taofeek B. Ogunbayo, Chukwuemeka Isanbor	In silico studies of selected multi-drug targeting against 3CLpro and nsp12 RNA-dependent RNA-polymerase proteins of SARS-CoV-2 and SARS-CoV.	Netw. Model. Anal. Health Informatics Bioinform.	2021	DBLP DOI BibTeX RDF
20	Chiranjeb Mondal, Sanjay V. Rajopadhye	Accelerating the BPMax Algorithm for RNA-RNA Interaction.	IPDPS Workshops	2021	DBLP DOI BibTeX RDF
20	Ziyi Liu, Fulin Luo, Bo Du 0001	RNA Secondary Structure Representation Network for RNA-proteins Binding Prediction.	AAAI	2021	DBLP DOI BibTeX RDF
20	Ali Ebrahimpour Boroojeny, Sanjay V. Rajopadhye, Hamidreza Chitsaz	BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy.	WABI	2021	DBLP DOI BibTeX RDF
20	Mehari B. Zerihun	RNA structure prediction guided by co-evolutionary information - method development and applications (Vorhersage der RNA-Struktur anhand koevolutionärer Informationen - Methodenentwicklung und Anwendungen) (PDF / PS)		2021	DOI RDF
20	Fengjie Hao, Junfeng Shi, Yongjun Chen, Xuefeng Gu, Di Ma	Integrated Analysis of a Noncoding RNA-Associated Competing Endogenous RNA Network in Non-Alcoholic Fatty Liver Disease.	IEEE Access	2020	DBLP DOI BibTeX RDF
20	Xuefeng Gu, Dongyang Jiang, Yue Yang, Peng Zhang 0070, Guoqing Wan, Wangxian Gu, Junfeng Shi, Liying Jiang, Bing Chen, Yanjun Zheng, Dingsheng Liu, Sufen Guo, Changlian Lu	Construction and Comprehensive Analysis of Dysregulated Long Noncoding RNA-Associated Competing Endogenous RNA Network in Moyamoya Disease.	Comput. Math. Methods Medicine	2020	DBLP DOI BibTeX RDF
20	Zhen Chen 0009, Pei Zhao, Fuyi Li, Yanan Wang 0003, Alexander Ian Smith, Geoffrey I. Webb, Tatsuya Akutsu, Abdelkader Baggag, Halima Bensmail, Jiangning Song	Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.	Briefings Bioinform.	2020	DBLP DOI BibTeX RDF
20	Katherine E. Richardson, Charles C. Kirkpatrick, Brent M. Znosko	RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures.	Database J. Biol. Databases Curation	2020	DBLP DOI BibTeX RDF
20	Mohamed Chaabane, Robert M. Williams, Austin T. Stephens, Juw Won Park	circDeep: deep learning approach for circular RNA classification from other long non-coding RNA.	Bioinform.	2020	DBLP DOI BibTeX RDF
20	Zichao Yan, William L. Hamilton, Mathieu Blanchette	Graph neural representational learning of RNA secondary structures for predicting RNA-protein interactions.	Bioinform.	2020	DBLP DOI BibTeX RDF
20	Junfeng Liu, Ziyang An, Jianjun Luo 0001, Jing Li, Feifei Li, Zhihua Zhang	Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite.	Bioinform.	2020	DBLP DOI BibTeX RDF
20	Grace Meng, Marva Tariq, Swati Jain, Shereef Elmetwaly, Tamar Schlick	RAG-Web: RNA structure prediction/design using RNA-As-Graphs.	Bioinform.	2020	DBLP DOI BibTeX RDF
20	Louis Becquey, Eric Angel, Fariza Tahi	BiORSEO: a bi-objective method to predict RNA secondary structures with pseudoknots using RNA 3D modules.	Bioinform.	2020	DBLP DOI BibTeX RDF
20	Stephen S. Tran, Qing Zhou, Xinshu Xiao	Statistical inference of differential RNA-editing sites from RNA-sequencing data by hierarchical modeling.	Bioinform.	2020	DBLP DOI BibTeX RDF
20	Amandeep Singh Bhatia, Shenggen Zheng	RNA-2QCFA: Evolving Two-way Quantum Finite Automata with Classical States for RNA Secondary Structures.	CoRR	2020	DBLP BibTeX RDF
20	Byungkyu Park, Kyungsook Han	Discovering protein-binding RNA motifs with a generative model of RNA sequences.	Comput. Biol. Chem.	2020	DBLP DOI BibTeX RDF
20	Elan Shatoff, Ralf Bundschuh	Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures.	PLoS Comput. Biol.	2020	DBLP DOI BibTeX RDF
20	Brandon Gildemaster, Prerana Ghalsasi, Sanjay V. Rajopadhye	A Tropical Semiring Multiple Matrix-Product Library on GPUs: (not just) a step towards RNA-RNA Interaction Computations.	IPDPS Workshops	2020	DBLP DOI BibTeX RDF
20	Sabrina Krakau	Statistical models to capture protein-RNA interaction footprints from truncation-based CLIP-seq data (Statistische Modelle zur Detektion von Protein-RNA Interaktionen aus trunkierungsbasierten CLIP-seq Daten)		2020	RDF
20	Hazrina Yusof Hamdani, Zatil H. Yahaya, Mohd Firdaus Raih	Predicting RNA-RNA Interactions in Three-Dimensional Structures.	Encyclopedia of Bioinformatics and Computational Biology (3)	2019	DBLP DOI BibTeX RDF
20	Pagadala Nataraj Sekhar	AZT acts as an anti-influenza nucleotide triphosphate targeting the catalytic site of A/PR/8/34/H1N1 RNA dependent RNA polymerase.	J. Comput. Aided Mol. Des.	2019	DBLP DOI BibTeX RDF
20	Xiangyu Wu, Zhen Wei, Kunqi Chen, Qing Zhang, Jionglong Su, Hui Liu 0024, Lin Zhang 0015, Jia Meng	m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
20	Zhongneng Xu, Shuichi Asakawa	Physiological RNA dynamics in RNA-Seq analysis.	Briefings Bioinform.	2019	DBLP DOI BibTeX RDF
20	Yongsheng Li 0001, Xiyun Jin, Zishan Wang, Lili Li, Hong Chen, Xiaoyu Lin, Song Yi, Yunpeng Zhang, Juan Xu 0001	Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk.	Briefings Bioinform.	2019	DBLP DOI BibTeX RDF
20	Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning	The RNA workbench 2.0: next generation RNA data analysis.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
20	Jiahua He, Jun Wang, Huanyu Tao, Yi Xiao, Sheng-You Huang	HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF