Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
1 | Sorina Maciuca, Carlos del Ojo Elias, Gil McVean, Zamin Iqbal |
A Natural Encoding of Genetic Variation in a Burrows-Wheeler Transform to Enable Mapping and Genome Inference. |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
1 | Martin C. Frith, Christian Nørgaard Storm Pedersen (eds.) |
Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Aarhus, Denmark, August 22-24, 2016. Proceedings |
WABI |
2016 |
DBLP DOI BibTeX RDF |
|
1 | Ilan Y. Smoly, Amir Carmel, Yonat Shemer-Avni, Esti Yeger Lotem, Michal Ziv-Ukelson |
Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-Viral Infection Patterns. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Rachid Ounit, Stefano Lonardi |
Higher Classification Accuracy of Short Metagenomic Reads by Discriminative Spaced k-mers. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Yaron Margalit, Yael Baran, Eran Halperin |
Multiple-Ancestor Localization for Recently Admixed Individuals. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi |
Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Guillaume Holley, Roland Wittler, Jens Stoye |
Bloom Filter Trie - A Data Structure for Pan-Genome Storage. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Zhong Sichen, Lu Zhao, Yan Liang, Mohammadzaman Zamani, Rob Patro, Rezaul Chowdhury, Esther M. Arkin, Joseph S. B. Mitchell, Steven Skiena |
Optimizing Read Reversals for Sequence Compression - (Extended Abstract). |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Giles Miclotte, Mahdi Heydari, Piet Demeester, Pieter Audenaert, Jan Fostier |
Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal Exact Matches. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Benjamin Drinkwater, Michael A. Charleston |
A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree Topologies. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Yelena Frid, Dan Gusfield |
A Sparsified Four-Russian Algorithm for RNA Folding. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Jun Zhou, Yu Lin 0001, Vaibhav Rajan, William Hoskins, Jijun Tang |
Maximum Parsimony Analysis of Gene Copy Number Changes. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Emre Sefer, Carl Kingsford |
Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic Data. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Dan Gusfield, Rasmus Nielsen |
Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani |
Circular Sequence Comparison with q-grams. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Yaron Orenstein, Bonnie Berger |
Efficient Design of Compact Unstructured RNA Libraries Covering All k-mers. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Poly H. da Silva, Simone Dantas, Chunfang Zheng, David Sankoff |
Graph-Theoretic Modelling of the Domain Chaining Problem. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Rui Henriques, Sara C. Madeira |
BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Mihai Pop, Hélène Touzet (eds.) |
Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Manuel Lafond, Nadia El-Mabrouk |
Orthology Relation and Gene Tree Correction: Complexity Results. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Krister M. Swenson, Mathieu Blanchette |
Models and Algorithms for Genome Rearrangement with Positional Constraints. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Ademir Hujdurovic, Ursa Kacar, Martin Milanic, Bernard Ries, Alexandru I. Tomescu |
Finding a Perfect Phylogeny from Mixed Tumor Samples. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Cinzia Pizzi |
A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Todd A. Gibson, Debra S. Goldberg |
The Topological Profile of a Model of Protein Network Evolution Can Direct Model Improvement. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Sebastian Will, Hosna Jabbari |
Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Yihan Sun 0001, Joseph Crawford, Jie Tang 0001, Tijana Milenkovic |
Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVE. |
WABI |
2015 |
DBLP DOI BibTeX RDF |
|
1 | Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix |
Navigating in a Sea of Repeats in RNA-seq without Drowning. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Nicolas Boria, Adam Kurpisz, Samuli Leppänen, Monaldo Mastrolilli |
Improved Approximation for the Maximum Duo-Preservation String Mapping Problem. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Yu-Ting Huang, Marek Chrobak |
An LP-Rounding Algorithm for Degenerate Primer Design. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Luís Felipe I. Cunha, Luis Antonio Brasil Kowada, Rodrigo de A. Hausen, Celina M. H. de Figueiredo |
A Faster 1.375-Approximation Algorithm for Sorting by Transpositions. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Gene Myers |
Efficient Local Alignment Discovery amongst Noisy Long Reads. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Sharon Bruckner, Falk Hüffner, Christian Komusiewicz |
A Graph Modification Approach for Finding Core-Periphery Structures in Protein Interaction Networks. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Constantinos Tsirogiannis, Brody Sandel, Adrija Kalvisa |
New Algorithms for Computing Phylogenetic Biodiversity. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi |
Constructing String Graphs in External Memory. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Yu Lin 0001, Pavel A. Pevzner |
Manifold de Bruijn Graphs. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Sebastian Will, Peter F. Stadler |
A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problems. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Ei-Wen Yang, Tao Jiang 0001 |
GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Matteo Comin, Andrea Leoni, Michele Schimd |
QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Martin D. Muggli, Simon J. Puglisi, Christina Boucher |
Efficient Indexed Alignment of Contigs to Optical Maps. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Vladimír Boza, Brona Brejová, Tomás Vinar |
GAML: Genome Assembly by Maximum Likelihood. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Daniel G. Brown 0001, Burkhard Morgenstern (eds.) |
Algorithms in Bioinformatics - 14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Shuai Jiang, Max A. Alekseyev |
Linearization of Median Genomes under DCJ. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Dominik Kopczynski, Sven Rahmann |
An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Sagi Snir |
Pacemaker Partition Identification. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Adrin Jalali, Nico Pfeifer |
Interpretable Per Case Weighted Ensemble Method for Cancer Associations. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Chen Gu, Leonidas J. Guibas, Michael Kerber |
Topology-Driven Trajectory Synthesis with an Example on Retinal Cell Motions. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Laxmi Parida, Cinzia Pizzi, Simona E. Rombo |
Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Niina Haiminen, Claude Lebreton, Laxmi Parida |
Best-Fit in Linear Time for Non-generative Population Simulation - (Extended Abstract). |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Kerstin Scheubert, Franziska Hufsky, Sebastian Böcker |
Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Kassian Kobert, Tomás Flouri, Andre J. Aberer, Alexandros Stamatakis |
The Divisible Load Balance Problem and Its Application to Phylogenetic Inference. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Phillip E. C. Compeau |
A Generalized Cost Model for DCJ-Indel Sorting. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris-André Leimeister |
Estimating Evolutionary Distances from Spaced-Word Matches. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Iman Hajirasouliha, Benjamin J. Raphael |
Reconstructing Mutational History in Multiply Sampled Tumors Using Perfect Phylogeny Mixtures. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye |
On the Family-Free DCJ Distance. |
WABI |
2014 |
DBLP DOI BibTeX RDF |
|
1 | Ilya Minkin, Anand Patel, Mikhail Kolmogorov, Nikolay Vyahhi, Son K. Pham |
Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Michal Modzelewski, Norbert Dojer |
MSARC: Multiple Sequence Alignment by Residue Clustering. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Xuefeng Cui, Shuai Cheng Li 0001, Dongbo Bu, Ming Li 0001 |
Towards Reliable Automatic Protein Structure Alignment. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Denisa Duma, Mary Wootters, Anna C. Gilbert, Hung Q. Ngo 0001, Atri Rudra, Matthew Alpert, Timothy J. Close, Gianfranco Ciardo, Stefano Lonardi |
Accurate Decoding of Pooled Sequenced Data Using Compressed Sensing. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | João Paulo Pereira Zanetti, Priscila Biller, João Meidanis |
On the Matrix Median Problem. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Ramanuja Simha, Hagit Shatkay |
Protein (Multi-)Location Prediction: Using Location Inter-dependencies in a Probabilistic Framework. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Balaji Venkatachalam, Dan Gusfield, Yelena Frid |
Faster Algorithms for RNA-Folding Using the Four-Russians Method. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Sebastian Böcker, Stefan Canzar, Gunnar W. Klau |
The Generalized Robinson-Foulds Metric. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Viraj Deshpande, Eric D. K. Fung, Son Pham, Vineet Bafna |
Cerulean: A Hybrid Assembly Using High Throughput Short and Long Reads. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya |
Detecting Superbubbles in Assembly Graphs. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Darya Filippova, Rob Patro, Geet Duggal, Carl Kingsford |
Multiscale Identification of Topological Domains in Chromatin. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Alexandru I. Tomescu, Anna Kuosmanen, Romeo Rizzi, Veli Mäkinen |
A Novel Combinatorial Method for Estimating Transcript Expression with RNA-Seq: Bounding the Number of Paths. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Nishanth Ulhas Nair, Yu Lin 0001, Philipp Bucher, Bernard M. E. Moret |
Phylogenetic Analysis of Cell Types Using Histone Modifications. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Nicolas Wieseke, Matthias Bernt, Martin Middendorf |
Unifying Parsimonious Tree Reconciliation. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Rolf Backofen, Markus Fricke, Manja Marz, Jing Qin 0006, Peter F. Stadler |
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Charalampos E. Tsourakakis |
Modeling Intratumor Gene Copy Number Heterogeneity Using Fluorescence in Situ Hybridization Data. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Limor Leibovich, Zohar Yakhini |
Mutual Enrichment in Ranked Lists and the Statistical Assessment of Position Weight Matrix Motifs. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Kamil Salikhov, Gustavo Sacomoto, Gregory Kucherov |
Using Cascading Bloom Filters to Improve the Memory Usage for de Brujin Graphs. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Sudheer Vakati, David Fernández-Baca |
Characterizing Compatibility and Agreement of Unrooted Trees via Cuts in Graphs. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Bernard M. E. Moret |
Extending the Reach of Phylogenetic Inference. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Aaron E. Darling, Jens Stoye (eds.) |
Algorithms in Bioinformatics - 13th International Workshop, WABI 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Laurent Bulteau, Guillaume Fertin, Christian Komusiewicz, Irena Rusu |
A Fixed-Parameter Algorithm for Minimum Common String Partition with Few Duplications. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot |
A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Kai Dührkop, Marcus Ludwig, Marvin Meusel, Sebastian Böcker |
Faster Mass Decomposition. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Constantinos Tsirogiannis, Brody Sandel |
Computing the Skewness of the Phylogenetic Mean Pairwise Distance in Linear Time. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Michal Nánási, Tomás Vinar, Brona Brejová |
Probabilistic Approaches to Alignment with Tandem Repeats. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Arnon Mazza, Irit Gat-Viks, Hesso Farhan, Roded Sharan |
A Minimum-Labeling Approach for Reconstructing Protein Networks across Multiple Conditions. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Evgeny Kapun, Fedor Tsarev |
On NP-Hardness of the Paired de Bruijn Sound Cycle Problem. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Jesper Jansson 0001, Chuanqi Shen, Wing-Kin Sung |
Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree. |
WABI |
2013 |
DBLP DOI BibTeX RDF |
|
1 | Olga Tanaseichuk, James Borneman, Tao Jiang 0001 |
A Probabilistic Approach to Accurate Abundance-Based Binning of Metagenomic Reads. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Geet Duggal, Rob Patro, Emre Sefer, Hao Wang 0024, Darya Filippova, Samir Khuller, Carl Kingsford |
Resolving Spatial Inconsistencies in Chromosome Conformation Data. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca |
A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Yen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk, Colin C. Collins, Süleyman Cenk Sahinalp |
CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Rayan Chikhi, Guillaume Rizk |
Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Niko Välimäki, Simon J. Puglisi |
Distributed String Mining for High-Throughput Sequencing Data. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Constantinos Tsirogiannis, Brody Sandel, Dimitris Cheliotis |
Efficient Computation of Popular Phylogenetic Tree Measures. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay 0001, Ujjwal Maulik, Sanghamitra Bandyopadhyay, Edgar Wingender |
δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Nimrod Milo, Shay Zakov, Erez Katzenelson, Eitan Bachmat, Yefim Dinitz, Michal Ziv-Ukelson |
RNA Tree Comparisons via Unrooted Unordered Alignments. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Nikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner |
From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Phillip E. C. Compeau |
A Simplified View of DCJ-Indel Distance. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Natalie Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik, Kira Vyatkina |
MORPH-PRO: A Novel Algorithm and Web Server for Protein Morphing. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Thi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry |
Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Akshay Deepak, David Fernández-Baca, Michelle M. McMahon |
Extracting Conflict-Free Information from Multi-labeled Trees. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré |
Tandem Halving Problems by DCJ. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Song Gao 0004, Denis Bertrand, Niranjan Nagarajan |
FinIS: Improved in silico Finishing Using an Exact Quadratic Programming Formulation. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|
1 | Rob Gysel, Kristian Stevens, Dan Gusfield |
Reducing Problems in Unrooted Tree Compatibility to Restricted Triangulations of Intersection Graphs. |
WABI |
2012 |
DBLP DOI BibTeX RDF |
|