Search results for "epitope"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
20	Wen Han Chen, Ping Ping Sun, Yang Lu, William W. Guo, Yan Xin Huang, Zhi Qiang Ma	MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
20	M. Ruhul Amin, Mohammad S. Siddiqui, Dilruba Ahmed, Firoz Ahmed, Anowar Hossain	B- and T-cell epitope mapping of human sapovirus capsid protein: an immunomics approach.	Int. J. Bioinform. Res. Appl.	2011	DBLP DOI BibTeX RDF
20	Julia V. Ponomarenko, Nikitas Papangelopoulos, Dirk M. Zajonc, Björn Peters, Alessandro Sette, Philip E. Bourne	IEDB-3D: structural data within the immune epitope database.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
20	Yaakov Maman, Ran Nir-Paz, Yoram Louzoun	Bacteria Modulate the CD8+ T Cell Epitope Repertoire of Host Cytosol-Exposed Proteins to Manipulate the Host Immune Response.	PLoS Comput. Biol.	2011	DBLP DOI BibTeX RDF
20	Nora C. Toussaint	New approaches to in silico design of epitope-based vaccines.		2011	RDF
20	Ya-Li Hsiao, Po-Fon Chen, Cheng-Fang Tsai, Hsiang-Chuan Liu, Pei-Chun Chang	Choquet integral algorithm for T-cell epitope prediction based on fuzzy measure.	FSKD	2011	DBLP DOI BibTeX RDF
20	Hsien-Wei Wang, Ya-Chi Lin, Tun-Wen Pai, Hao-Teng Chang	Poster: Linear B-cell epitope prediction based on Support Vector Machine and propensity scales.	ICCABS	2011	DBLP DOI BibTeX RDF
20	Hsin-Wei Wang, Ya-Chi Lin, Tun-Wen Pai, Pei-Wen Tsai, Hao-Teng Chang	A Hybrid Method of Propensity Scales and Support Vector Machine in a Linear Epitope Prediction.	CISIS	2011	DBLP DOI BibTeX RDF
20	Salvador Eugenio C. Caoili	Affinity limits in B-cell epitope prediction for immunity mediated by antipeptide antibodies.	BCB	2011	DBLP DOI BibTeX RDF
20	Dan He 0001, Pratima Kunwar, Eleazar Eskin, Helen Horton, Peter B. Gilbert, Tomer Hertz	Using HLA binding prediction algorithms for epitope mapping in HIV vaccine clinical trials.	BCB	2011	DBLP DOI BibTeX RDF
20	Nora C. Toussaint, Magdalena Feldhahn, Matthias Ziehm, Stefan Stevanovic, Oliver Kohlbacher	T-cell epitope prediction based on self-tolerance.	BCB	2011	DBLP DOI BibTeX RDF
20	Indranil Mitra, Yan Cui	Understanding molecular recognition and epitope prediction from Information Theoretic approach.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
20	Randi Vita, Laura Zarebski, Jason Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Björn Peters	The Immune Epitope Database 2.0.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
20	Douglas Cork, Steven Lembark, Sodsai Tovanabutra, Eric Sanders-Buell, Bruce Brown, Merlyn Robb, Lindsay Wieczorek, Victoria Polonis, Nelson Michael, Jerome H. Kim	Application of W-curves and TSP to Clustering HIV-1 Sequences by Epitope.	BIOCOMP	2010	DBLP BibTeX RDF
20	Salvador Eugenio C. Caoili	B-cell epitope prediction for peptide-based vaccine design: towards a paradigm of biological outcomes.	BCB	2010	DBLP DOI BibTeX RDF
20	Alpna Agarwal, Susan Zolla-Pazner, James Swetnam, Timothy Cardozo	Effective neutralization and neutralization epitope masking signatures for four anti-V3 mAbs.	BCB	2010	DBLP DOI BibTeX RDF
20	Matthew Ardito, Leonard Moise, William D. Martin, Anne S. De Groot	Immunoinformatic approach to a multi-pathogen genome-derived epitope-driven vaccine.	BCB	2010	DBLP DOI BibTeX RDF
20	Sinu Paul, Helen Piontkivska	Highly conserved and associated HIV-1 CTL and T-Helper epitopes in global HIV-1 population: potential candidates for multi-epitope HIV-1 vaccine.	BCB	2010	DBLP DOI BibTeX RDF
20	Yasser El-Manzalawy, Vasant G. Honavar	A framework for developing epitope prediction tools.	BCB	2010	DBLP DOI BibTeX RDF
20	Jing Sun, Di Wu, Tianlei Xu, Xiaojing Wang, Xiaolian Xu, Lin Tao, Y. X. Li, Zhi-Wei Cao	SEPPA: a computational server for spatial epitope prediction of protein antigens.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
20	In Seok Yang, Joo-Yeon Lee, Joon Seung Lee, Wayne P. Mitchell, Hee-Bok Oh, Chun Kang, Kyung Hyun Kim	Influenza sequence and epitope database.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
20	Nora C. Toussaint, Oliver Kohlbacher	OptiTope - a web server for the selection of an optimal set of peptides for epitope-based vaccines.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
20	Magdalena Feldhahn, Pierre Dönnes, Philipp Thiel, Oliver Kohlbacher	FRED - a framework for T-cell epitope detection.	Bioinform.	2009	DBLP DOI BibTeX RDF
20	Aidan MacNamara, Ulrich D. Kadolsky, Charles R. M. Bangham, Becca Asquith	T-Cell Epitope Prediction: Rescaling Can Mask Biological Variation between MHC Molecules.	PLoS Comput. Biol.	2009	DBLP DOI BibTeX RDF
20	Stanislav Jakuschev, Daniel Hoffmann	A Novel Algorithm for Macromolecular Epitope Matching.	Algorithms	2009	DBLP DOI BibTeX RDF
20	Hamid Izadinia, Fereshteh Sadeghi, Mohammad Mehdi Ebadzadeh	A Hybrid Fuzzy Neuro-Immune Network based on Multi-Epitope approach.	IJCNN	2009	DBLP DOI BibTeX RDF
20	Wei-Kuo Wu, Wei-Chun Chung, Hao-Teng Chang, Ron-Shan Cheng, Tun-Wen Pai	B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics.	CISIS	2009	DBLP DOI BibTeX RDF
20	Yanxin Huang, Yongli Bao, Shu Yan Guo, Yan Wang 0028, Chunguang Zhou, Yuxin Li	Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
20	Maria Garcia-Boronat, Carmen M. Diez-Rivero, Ellis L. Reinherz, Pedro A. Reche	PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
20	Qing Zhang, Peng Wang 0014, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen 0001, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters	Immune epitope database analysis resource (IEDB-AR).	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
20	James Lara, Robert M. Wohlhueter, Zoya Dimitrova, Yuri Khudyakov	Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein.	Bioinform.	2008	DBLP DOI BibTeX RDF
20	Michael J. Sweredoski, Pierre Baldi	PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure.	Bioinform.	2008	DBLP DOI BibTeX RDF
20	Gopichandran Sowmya, Ayyappan Vaishnavi, Pandjassarame Kangueane	Structure modeling based computer aided T-cell epitope design.	Bio Algorithms Med Syst.	2008	DBLP BibTeX RDF
20	Nora C. Toussaint, Pierre Dönnes, Oliver Kohlbacher	A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines.	PLoS Comput. Biol.	2008	DBLP DOI BibTeX RDF
20	Nico Pfeifer, Oliver Kohlbacher	Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles.	WABI	2008	DBLP DOI BibTeX RDF
20	Peng Wang 0014, Alexander A. Morgan, Qing Zhang, Alessandro Sette, Björn Peters	Automating document classification for the Immune Epitope Database.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
20	Mette V. Larsen, Claus Lundegaard, Kasper Lamberth, Søren Buus, Ole Lund, Morten Nielsen 0001	Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
20	Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko	Pepitope: epitope mapping from affinity-selected peptides.	Bioinform.	2007	DBLP DOI BibTeX RDF
20	David Heckerman, Carl Myers Kadie, Jennifer Listgarten	Leveraging Information Across HLA Alleles/Supertypes Improves Epitope Prediction.	J. Comput. Biol.	2007	DBLP DOI BibTeX RDF
20	Liwen You, Ping Zhang 0008, Mikael Bodén, Vladimir Brusic	Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification.	PRIB	2007	DBLP DOI BibTeX RDF
20	Huynh-Hoa Bui, John Sidney, Kenny Dinh, Scott Southwood, Mark J. Newman, Alessandro Sette	Predicting population coverage of T-cell epitope-based diagnostics and vaccines.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
20	Irini A. Doytchinova, Pingping Guan, Darren R. Flower	EpiJen: a server for multistep T cell epitope prediction.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
20	Jian Huang 0004, Alex Gutteridge, Wataru Honda, Minoru Kanehisa	MIMOX: a web tool for phage display based epitope mapping.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
20	Violaine Moreau, Claude Granier, Sylvie Villard, Daniel Laune, Franck Molina	Discontinuous epitope prediction based on mimotope analysis.	Bioinform.	2006	DBLP DOI BibTeX RDF
20	Almut Scherer, Marcel Salathé, Sebastian Bonhoeffer	High Epitope Expression Levels Increase Competition between T Cells.	PLoS Comput. Biol.	2006	DBLP DOI BibTeX RDF
20	Andreas Schreiber 0004, Michael Humbert, Alexander Benz, Ursula Dietrich	3D-Epitope-Explorer (3DEX): Localization of conformational epitopes within three-dimensional structures of proteins.	J. Comput. Chem.	2005	DBLP DOI BibTeX RDF
20	Urmila Kulkarni-Kale, Shriram Bhosle, Ashok S. Kolaskar	CEP: a conformational epitope prediction server.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
20	Pedro A. Reche, Ellis L. Reinherz	PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
20	Tom Milledge, Gaolin Zheng, Giri Narasimhan	An Application of Association Rule Mining to HLA-a*0201 epitope Prediction.	Advances in Bioinformatics and Its Applications	2005	DBLP DOI BibTeX RDF
20	Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson	A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.	ISMB (Supplement of Bioinformatics)	2005	DBLP DOI BibTeX RDF
20	Myong-Hee Sung, Richard Simon	Genomewide Conserved Epitope Profiles of HIV-1 Predicted by Biophysical Properties of MHC Binding Peptides.	J. Comput. Biol.	2004	DBLP DOI BibTeX RDF
20	German Nudelman, Yoram Louzoun	Antigen Epitope Density Dependent Cell Surface Discrimination and the Role of the Lipid Rafts.	METMBS	2004	DBLP BibTeX RDF
20	Myong-Hee Sung, Yingdong Zhao, Roland Martin, Richard M. Simon	T-Cell Epitope Prediction with Combinatorial Peptide Libraries.	J. Comput. Biol.	2003	DBLP DOI BibTeX RDF
20	Yingdong Zhao, Lenny Grover, Richard M. Simon	TEST: A Web-Based T-Cell Epitope Search Tool.	CBMS	2001	DBLP DOI BibTeX RDF
20	Laura Raddrizzani, Jürgen Hammer	Epitope Scanning Using Virtual Matrix-based Algorithms.	Briefings Bioinform.	2000	DBLP DOI BibTeX RDF
20	Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara	Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs.	Pacific Symposium on Biocomputing	1999	DBLP BibTeX RDF
20	Lunjiang Ling, Junko Shimura, Hideaki Sugawara, Akira Tsugita	Epitope Data Bank.	CODATA	1994	DBLP BibTeX RDF
19	Niall J. Haslam, Toby J. Gibson	EpiC: A Resource for Integrating Information and Analyses to Enable Selection of Epitopes for Antibody Based Experiments.	DILS	2009	DBLP DOI BibTeX RDF
19	Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vladimir Jojic, Guri Giaever, Andrew Emili, Gabe Musso, Robert Hegele	Constructing Treatment Portfolios Using Affinity Propagation.	RECOMB	2008	DBLP DOI BibTeX RDF
19	David C. Trudgian, Zheng Rong Yang	Substitution Matrix Optimisation for Peptide Classification.	EvoBIO	2007	DBLP DOI BibTeX RDF
19	Galip Gürkan Yardimci, Alper Küçükural, Yücel Saygin, Osman Ugur Sezerman	Modified Association Rule Mining Approach for the MHC-Peptide Binding Problem.	ISCIS	2006	DBLP DOI BibTeX RDF	MHC Class-I, reduced amino acid alphabet, data mining, Association rule mining, Peptides
19	Peter T. Hraber, Bette T. Korber, Steven Wolinsky, Henry A. Erlich, Elizabeth A. Trachtenberg, Thomas B. Kepler	HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics.	ISBMDA	2006	DBLP DOI BibTeX RDF
19	Reeti Tandon, Sudeshna Adak, Brion Sarachan, William FitzHugh, Jeremy Heil, Vaibhav A. Narayan	Predicting Continuous Epitopes in Proteins.	CSB Workshops	2005	DBLP DOI BibTeX RDF
19	Feng Shi, Jing Huang	Prediction of T-cell Epitopes Using Support Vector Machine and Similarity Kernel.	CIS (1)	2005	DBLP DOI BibTeX RDF
19	Sudipto Saha, G. P. S. Raghava	BcePred: Prediction of Continuous B-Cell Epitopes in Antigenic Sequences Using Physico-chemical Properties.	ICARIS	2004	DBLP DOI BibTeX RDF