Search results for "homologous"

Hits ?▲	Authors	Title	Venue	Year	Link
19	Guilherme P. Telles, Nalvo F. Almeida, Marcelo M. Brigido, Paulo Antonio Alvarez, Maria Emília Telles Walter	kGC: Finding Groups of Homologous Genes across Multiple Genomes.	BSB	2011	DBLP DOI BibTeX RDF
19	Xianjun Dong, Altuna Akalin, Yogita Sharma, Boris Lenhard	Translog, a web browser for studying the expression divergence of homologous genes.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
19	Yu-Shu Lo, Chun-Yu Lin 0003, Jinn-Moon Yang	PCFamily: a web server for searching homologous protein complexes.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
19	Khalid Mahmood 0001, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock	EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.	Bioinform.	2010	DBLP DOI BibTeX RDF
19	Tamal K. Dey, Anil N. Hirani, Bala Krishnamoorthy	Optimal Homologous Cycles, Total Unimodularity, and Linear Programming	CoRR	2010	DBLP BibTeX RDF
19	Tatyana B. Mamonova, Anna V. Glyakina, Maria G. Kurnikova, Oxana V. Galzitskaya	Flexibility and Mobility in Mesophilic and Thermophilic homologous proteins from Molecular Dynamics and Foldunfold Method.	J. Bioinform. Comput. Biol.	2010	DBLP DOI BibTeX RDF
19	Vesna Memisevic, Tijana Milenkovic, Natasa Przulj	Complementarity of network and sequence information in homologous proteins.	J. Integr. Bioinform.	2010	DBLP DOI BibTeX RDF
19	Juliette Martin	Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way.	PLoS Comput. Biol.	2010	DBLP DOI BibTeX RDF
19	Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin	Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments.	RECOMB	2010	DBLP DOI BibTeX RDF
19	Shintaro Hirayama, Satoshi Mizuta	Significant Deviations in the Configurations of Homologous Tandem Repeats in Prokaryotic Genomes.	Genom. Proteom. Bioinform.	2009	DBLP DOI BibTeX RDF
19	Zhen Wang, Guohui Ding 0001, Zhong-Hao Yu, Lei Liu, Yixue Li	CHSMiner: a GUI tool to identify chromosomal homologous segments.	Algorithms Mol. Biol.	2009	DBLP DOI BibTeX RDF
19	Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière	Databases of homologous gene families for comparative genomics.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
19	Yungki Park	Critical assessment of sequence-based protein-protein interaction prediction methods that do not require homologous protein sequences.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
19	Chun-Chen Chen, Chun-Yu Lin 0003, Yu-Shu Lo, Jinn-Moon Yang	PPISearch: a web server for searching homologous protein-protein interactions across multiple species.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
19	Babak Bostan, Russell Greiner, Duane Szafron, Paul Lu	Predicting homologous signaling pathways using machine learning.	Bioinform.	2009	DBLP DOI BibTeX RDF
19	Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai	Predictions of RNA secondary structure by combining homologous sequence information.	Bioinform.	2009	DBLP DOI BibTeX RDF
19	Xiaowen Liu, Yonghua Han, Denis Yuen, Bin Ma 0002	Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy.	Bioinform.	2009	DBLP DOI BibTeX RDF
19	Ambrish Roy, Narayanaswamy Srinivasan, Venkatraman S. Gowri	Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics.	Silico Biol.	2009	DBLP DOI BibTeX RDF
19	Albert Erives	Non-Homologous Structured CRMs from the Ciona Genome.	J. Comput. Biol.	2009	DBLP DOI BibTeX RDF
19	Kosuke Yamaguchi, Syoji Kobashi, Ikuko Mohri, Seturo Imawaki, Masako Taniike, Yutaka Hata	Brain Shape Homologous Modeling Using Sulcal-Distribution Index in MR Images.	SMC	2009	DBLP DOI BibTeX RDF
19	Matthew Menke	Computational approaches to modeling the conserved structural core among distantly homologous proteins.		2009	RDF
19	Shay Artzi, Adam Kiezun, Noam Shomron	miRNAminer: A tool for homologous microRNA gene search.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
19	Valdemaras Repsys, Mindaugas Margelevicius, Ceslovas Venclovas	Re-searcher: a system for recurrent detection of homologous protein sequences.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
19	Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich	FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
19	Byungwook Lee, Doheon Lee	DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture.	Nucleic Acids Res.	2008	DBLP DOI BibTeX RDF
19	Ramazan Saeed, Charlotte M. Deane	An assessment of the uses of homologous interactions.	Bioinform.	2008	DBLP DOI BibTeX RDF
19	Fernanda Barea, Simone Tessaro, Diego Bonatto	In silico analyses of a new group of fungal and plant RecQ4-homologous proteins.	Comput. Biol. Chem.	2008	DBLP DOI BibTeX RDF
19	Simon Wong, Mark A. Ragan	MACHOS: Markov clusters of homologous subsequences.	ISMB	2008	DBLP DOI BibTeX RDF
19	Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang 0010, Alexander Tropsha	Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs.	BIBM	2008	DBLP DOI BibTeX RDF
19	Mine Ilk Capar, Emine Cebe	Odd-even effects in the homologous series of alkyl-cyanobiphenyl liquid crystals: A molecular dynamic study.	J. Comput. Chem.	2007	DBLP DOI BibTeX RDF
19	Stefan Engelen, Fariza Tahi	Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
19	Giulio Pavesi, Federico Zambelli, Graziano Pesole	WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
19	David Talavera, Adam Hospital, Modesto Orozco, Xavier de la Cruz	A procedure for identifying homologous alternative splicing events.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
19	Minmei Hou, Piotr Berman, Chih-Hao Hsu, Robert S. Harris	HomologMiner: looking for homologous genomic groups in whole genomes.	Bioinform.	2007	DBLP DOI BibTeX RDF
19	Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eric Maréchal	The configuration space of homologous proteins: A theoretical and practical framework to reduce the diversity of the protein sequence space after massive all-by-all sequence comparisons.	Future Gener. Comput. Syst.	2007	DBLP DOI BibTeX RDF
19	Christophe Dessimoz, Manuel Gil, Adrian Schneider, Gaston H. Gonnet	Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
19	Tatsusada Yoshida, Zsolt Lepp, Yoshito Kadota, Yurie Satoh, Kohji Itoh, Hiroshi Chuman	Comparative Analysis of Binding Energy of Chymostatin with Human Cathepsin A and Its Homologous Proteins by Molecular Orbital Calculation.	J. Chem. Inf. Model.	2006	DBLP DOI BibTeX RDF
19	Ingo Paulsen, Arndt von Haeseler	INVHOGEN: a database of homologous invertebrate genes.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
19	Rasmus Wernersson, Kristoffer Rapacki, Hans Henrik Stærfeldt, Peter Wad Sackett, Anne Mølgaard	FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
19	Giulio Pavesi, Paolo Mereghetti, Federico Zambelli, Marco Stefani, Giancarlo Mauri, Graziano Pesole	MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.	Nucleic Acids Res.	2006	DBLP DOI BibTeX RDF
19	Faisal Ababneh, Lars S. Jermiin, Chunsheng Ma, John Robinson	Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences.	Bioinform.	2006	DBLP DOI BibTeX RDF
19	Anne-Muriel Arigon, Guy Perrière, Manolo Gouy	HoSeqI: automated homologous sequence identification in gene family databases.	Bioinform.	2006	DBLP DOI BibTeX RDF
19	Yvonne Y. Li, Steven J. M. Jones, Artem Cherkasov	Selective Targeting of Indel-inferred Differences in Spatial Structures of Homologous Proteins.	J. Bioinform. Comput. Biol.	2006	DBLP DOI BibTeX RDF
19	Jacek Kuska, Jacek Leluk, Bogdan Lesyng	The mutational variability within homologous kinase families.	Bio Algorithms Med Syst.	2006	DBLP BibTeX RDF
19	Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eric Maréchal	A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
19	Jean-François Dufayard, Laurent Duret, Simon Penel, Manolo Gouy, François Rechenmann, Guy Perrière	Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.	Bioinform.	2005	DBLP DOI BibTeX RDF
19	Asger Hobolth, Jens Ledet Jensen	Applications of Hidden Markov Models for Characterization of Homologous DNA Sequences with a Common Gene.	J. Comput. Biol.	2005	DBLP DOI BibTeX RDF
19	Sali Lv, Qianghu Wang, Guangmei Zhang, Fengxia Wen, Zhenzhen Wang, Xia Li 0004	A New Method for Gene Functional Prediction Based on Homologous Expression Profile.	FSKD (2)	2005	DBLP DOI BibTeX RDF
19	Lucy A. Stebbings, Kenji Mizuguchi	HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
19	Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova	SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.	Nucleic Acids Res.	2004	DBLP DOI BibTeX RDF
19	Ricardo Núñez Miguel	Sequence patterns derived from the automated prediction of functional residues in structurally-aligned homologous protein families.	Bioinform.	2004	DBLP DOI BibTeX RDF
19	Brona Brejová, Daniel G. Brown 0001, Tomás Vinar	Optimal Spaced Seeds for Homologous Coding Regions.	J. Bioinform. Comput. Biol.	2004	DBLP DOI BibTeX RDF
19	Seema Namboori, Narayanaswamy Srinivasan, Shashi B. Pandit	Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures.	Silico Biol.	2004	DBLP BibTeX RDF
19	Nalvo F. de Almeida Jr., João C. Setubal, Marcelo de Carvalho, Carlos Juliano M. Viana	A method to determine homologous protein families based on graph cliques and profiles.	WOB	2004	DBLP BibTeX RDF
19	Luciana S. Pessoa, Helena Cristina da Gama Leitão, Jorge Stolfi	Mutual Information Content of Homologous DNA Sequences.	WOB	2004	DBLP BibTeX RDF
19	Alexander Stark 0001, Robert B. Russell	Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
19	Sylvain Foissac, Philippe Bardou, Annick Moisan, Marie-Josée Cros, Thomas Schiex	EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences.	Nucleic Acids Res.	2003	DBLP DOI BibTeX RDF
19	David Stephen Horner, Graziano Pesole	The estimation of relative site variability among aligned homologous protein sequences.	Bioinform.	2003	DBLP DOI BibTeX RDF
19	Olivier Perriquet, Hélène Touzet, Max Dauchet	Finding the common structure shared by two homologous RNAs.	Bioinform.	2003	DBLP DOI BibTeX RDF
19	Soumita Das, Keya Chaudhuri	Identification of a unique IAHP (IcmF associated homologous proteins) cluster in Vibrio cholerae and other proteobacteria through in silico analysis.	Silico Biol.	2003	DBLP BibTeX RDF
19	James V. Hansen	Genetic Programming Experiments with Standard and Homologous Crossover Methods .	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF
19	Shi-Yi Shen, Jun Yang, Adam Yao, Pei-Ing Hwang	Super Pairwise Alignment (SPA): An Efficient Approach to Global Alignment for Homologous Sequences.	J. Comput. Biol.	2003	DBLP DOI BibTeX RDF
19	Brona Brejová, Daniel G. Brown 0001, Tomás Vinar	Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions.	CPM	2003	DBLP DOI BibTeX RDF
19	Sung-Joon Park, Masayuki Yamamura	Real-Coded Genetic Algorithm to Reveal Biological Significant Sites of Remotely Homologous Proteins.	GECCO	2003	DBLP DOI BibTeX RDF
19	Florence Servant, Catherine Bru, Sébastien Carrère, Emmanuel Courcelle, Jérôme Gouzy, David Peyruc, Daniel Kahn	ProDom: Automated Clustering of Homologous Domains.	Briefings Bioinform.	2002	DBLP DOI BibTeX RDF
19	Riccardo Bennett-Lovsey, Sarah E. Hart, Hiroki Shirai, Kenji Mizuguchi	The SWIB and the MDM2 domains are homologous and share a common fold.	Bioinform.	2002	DBLP DOI BibTeX RDF
19	Jeremy C. Ahouse	Are the Eyes Homologous?	Gene Regulations and Metabolism	2002	DBLP BibTeX RDF
19	Riccardo Poli, Christopher R. Stephens, Alden H. Wright, Jonathan E. Rowe	A Schema-Theory-Based Extension of Geiringer's Theorem for Linear GP and Varialbe-length GAs under Homologous Crossover.	FOGA	2002	DBLP BibTeX RDF
19	S. Balaji, S. Sujatha, S. Sai Chetan Kumar, Narayanaswamy Srinivasan	PALI - a database of Phylogeny and ALIgnment of homologous protein structures.	Nucleic Acids Res.	2001	DBLP DOI BibTeX RDF
19	Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, Jiye Shi, Hiroki Shirai, Tom L. Blundell	HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.	Bioinform.	2001	DBLP DOI BibTeX RDF
19	Weizhong Li 0002, Lukasz Jaroszewski, Adam Godzik	Clustering of highly homologous sequences to reduce the size of large protein databases.	Bioinform.	2001	DBLP DOI BibTeX RDF
19	S. Sujatha, S. Balaji, Narayanaswamy Srinivasan	PALI: a database of alignments and phylogeny of homologous protein structures.	Bioinform.	2001	DBLP DOI BibTeX RDF
19	Tobias Müller 0001, Sven Rahmann, Marc Rehmsmeier	Non-symmetric score matrices and the detection of homologous transmembrane proteins.	ISMB (Supplement of Bioinformatics)	2001	DBLP BibTeX RDF
19	Frank W. Larimer	Software Review HOBACGEN: Homologous Bacterial Genes Database.	Briefings Bioinform.	2000	DBLP DOI BibTeX RDF
19	Elke Feldmann, Viola Schmiemann, Wolfgang Goedecke, Susanne Reichenberger, Petra Pfeiffer	DNA double-strand break repair in cell-free extracts from Ku80-deficient cells: implications for Ku serving as an alignment factor in non-homologous DNA end joining.	Nucleic Acids Res.	2000	DBLP DOI BibTeX RDF
19	Jonathan Usuka, Wei Zhu 0001, Volker Brendel	Optimal spliced alignment of homologous cDNA to a genomic DNA template.	Bioinform.	2000	DBLP DOI BibTeX RDF
19	William B. Langdon	Size Fair and Homologous Tree Crossovers for Tree Genetic Programming.	Genet. Program. Evolvable Mach.	2000	DBLP DOI BibTeX RDF
19	Alexandru T. Balaban, Subhash C. Basak, Denise R. Mills	Normal Boiling Points of 1, -Alkanedinitriles: The Highest Increment in a Homologous Series.	J. Chem. Inf. Comput. Sci.	1999	DBLP DOI BibTeX RDF
19	Stuart Wilson, Nicholas Warr, Deborah L. Taylor, Felicity Z. Watts	The role of Schizosaccharomyces pombe Rad32, the Mre11 homologue, and other DNA damage response proteins in non-homologous end joining and telomere length maintenance.	Nucleic Acids Res.	1999	DBLP DOI BibTeX RDF
19	Frank D. Francone, Markus Conrads, Wolfgang Banzhaf, Peter Nordin	Homologous Crossover in Genetic Programming.	GECCO	1999	DBLP BibTeX RDF
19	Guy Perrière, Laurent Duret	HOBACGEN: A database of homologous genes in bacteria.	German Conference on Bioinformatics	1999	DBLP BibTeX RDF
19	Jong-Chan Park, Sarah A. Teichmann	DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins.	Bioinform.	1998	DBLP DOI BibTeX RDF
19	Imran Shah, Lawrence Hunter	Identification of Divergent Functions in Homologous Proteins by Induction over Conserved Modules.	ISMB	1998	DBLP BibTeX RDF
19	Tamal K. Dey	Optimal Algorithms to Detect Null-Homologous Cycles on 2-Manifolds.	Int. J. Comput. Geom. Appl.	1997	DBLP DOI BibTeX RDF
19	Igor B. Rogozin, Luciano Milanesi, Nikolay A. Kolchanov	Gene structure prediction using information on homologous protein sequence.	Comput. Appl. Biosci.	1996	DBLP DOI BibTeX RDF
19	Charles R. Meyer, Gregg S. Leichtman, James A. Brunberg, Richard L. Wahl, Leslie E. Quint	Simultaneous usage of homologous points, lines, and planes for optimal, 3-D, linear registration of multimodality imaging data.	IEEE Trans. Medical Imaging	1995	DBLP DOI BibTeX RDF
19	C. S. Poornima, P. M. Dean	Hydration in drug design. 3. Conserved water molecules at the ligand-binding sites of homologous proteins.	J. Comput. Aided Mol. Des.	1995	DBLP DOI BibTeX RDF
19	Walter Stünkel, Ingo Kober, Manfred Kauer, Gerhild Taimor, Klaus H. Seifart	Human TFIIIA alone is sufficient to prevent nucleosomal repression of a homologous 5S gene.	Nucleic Acids Res.	1995	DBLP DOI BibTeX RDF
19	D. Bordo	Comparison of side chain interactions performed by structurally equivalent residues in homologous protein structures.	Comput. Appl. Biosci.	1995	DBLP DOI BibTeX RDF
19	A. Torelli, C. A. Robotti	ADVANCE and ADAM: two algorithms for the analysis of global similarity between homologous informational sequences.	Comput. Appl. Biosci.	1994	DBLP DOI BibTeX RDF
19	D. Bordo	ENVIRON: a software package to compare protein three-dimensional structures with homologous sequences using local structural motifs.	Comput. Appl. Biosci.	1993	DBLP DOI BibTeX RDF
19	Tamal K. Dey	Optimal Algorithms to Detect Null-homologous Cycles on 2-manifolds.	CCCG	1993	DBLP BibTeX RDF
19	Robbert G. van der Most, Leo Heijnen, Willy J. M. Spaan, Raoul J. de Groot	Homologous RNA recombination allows efficient introduction of site- specific mutations into the genome of coronavirus MHV-A59 via synthetic co-replicating RNAs.	Nucleic Acids Res.	1992	DBLP DOI BibTeX RDF
19	V. B. Cockcroft, J. T. Pedersen, G. G. Lunt, David J. Osguthorpe	BIOSITE: a program for the interactive comparison of aligned homologous protein sequences.	Comput. Appl. Biosci.	1992	DBLP DOI BibTeX RDF
19	H. Klein, C. Gervais, M. Suh	Nucleotide sequence of a hamster cDNA highly homologous to the Xenopus laevis S19 ribosomal protein.	Nucleic Acids Res.	1990	DBLP DOI BibTeX RDF
19	Fabienne Blanca, Conchita Ferraz, Joannes Sri Widada, Jean-Pierre Liautard	Quantitative analysis of the selective pressure exerted on homologous proteins.	Comput. Appl. Biosci.	1990	DBLP DOI BibTeX RDF
19	C. M. Henneke	A multiple sequence alignment algorithm for homologous proteins using secondary structure information and optionally keying alignments to functionally important sites.	Comput. Appl. Biosci.	1989	DBLP DOI BibTeX RDF
19	Q. Trinh-Rohlik, E. S. Maxwell	Homologous genes for mouse 4.5S hybRNA are found in all eukaryotes and their low molecular weight RNA transcripts intermolecularly hybridize with eukaryotic 18S ribosomal RNAs.	Nucleic Acids Res.	1988	DBLP DOI BibTeX RDF
19	W. D. Reiter, P. Palm, W. Zillig	Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters.	Nucleic Acids Res.	1988	DBLP DOI BibTeX RDF
19	R. Gafny, H. C. Hyman, S. Razin, G. Glaser	Promoters of Mycoplasma capricolum ribosomal RNA operons: identical activities but different regulation in homologous and heterologous cells.	Nucleic Acids Res.	1988	DBLP DOI BibTeX RDF