Search results for "proteomics"

Hits ?▲	Authors	Title	Venue	Year	Link
16	Muhammad Nabeel Asim	An Efficient Automated Machine Learning Framework for Genomics and Proteomics Sequence Analysis.		2023	RDF
16	Guang Song, Emily M. Lee, Jianbo Pan, Miao Xu, Hee-Sool Rho, Yichen Cheng, Nadia Whitt, Shu Yang, Jennifer Kouznetsova, Carleen Klumpp-Thomas, Samuel G. Michael, Cedric Moore, Ki-Jun Yoon, Kimberly M. Christian, Anton Simeonov, Wenwei Huang, Menghang Xia, Ruili Huang, Madhu Lal-Nag, Hengli Tang, Wei Zheng, Jiang Qian, Hongjun Song, Guo-li Ming, Heng Zhu	Corrigendum to "An Integrated Systems Biology Approach Identifies the Proteasome as A Critical Host Machinery for ZIKV and DENV Replication" [Genomics Proteomics Bioinformatics19 (1) (2021) 108-122].	Genom. Proteom. Bioinform.	2022	DBLP DOI BibTeX RDF
16	Minjie Mou, Ziqi Pan, Mingkun Lu, Huaicheng Sun, Yunxia Wang, Yongchao Luo, Feng Zhu 0004	Application of Machine Learning in Spatial Proteomics.	J. Chem. Inf. Model.	2022	DBLP DOI BibTeX RDF
16	Miao-Hsia Lin, Pei-Shan Wu, Tzu-Hsuan Wong, I-Ying Lin, Johnathan Lin, Jürgen Cox, Sung-Huan Yu	Benchmarking differential expression, imputation and quantification methods for proteomics data.	Briefings Bioinform.	2022	DBLP DOI BibTeX RDF
16	Tao Chen 0005, Jie Ma, Yi Liu, Zhiguang Chen, Nong Xiao, Yutong Lu, Yinjin Fu, Chunyuan Yang, Mansheng Li, Songfeng Wu, Xue Wang, Dongsheng Li, Fuchu He, Henning Hermjakob, Yunping Zhu	iProX in 2021: connecting proteomics data sharing with big data.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
16	Yasset Pérez-Riverol, Jingwen Bai 0003, Chakradhar Bandla, David García-Seisdedos, Suresh Hewapathirana, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Ananth Prakash, Anika Frericks-Zipper, Martin Eisenacher, Mathias Walzer, Shengbo Wang, Alvis Brazma, Juan Antonio Vizcaíno	The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.	Nucleic Acids Res.	2022	DBLP DOI BibTeX RDF
16	Yao Gong, Yue Chen	UbE3-APA: a bioinformatic strategy to elucidate ubiquitin E3 ligase activities in quantitative proteomics study.	Bioinform.	2022	DBLP DOI BibTeX RDF
16	Jonathan Dhenin, Diogo B. Lima, Mathieu Dupré, Julia Chamot-Rooke	TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics.	Bioinform.	2022	DBLP DOI BibTeX RDF
16	Eugenia Voytik, Isabell Bludau, Sander Willems, Fynn M. Hansen, Andreas-David Brunner, Maximilian T. Strauss, Matthias Mann	AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge.	Bioinform.	2022	DBLP DOI BibTeX RDF
16	Jillur Rahman Saurav, Mohammad Sadegh Nasr 0001, Paul Koomey, Michael Robben, Manfred Huber, Jon Weidanz, Bríd Ryan, Eytan Ruppin, Peng Jiang, Jacob M. Luber	A SSIM Guided cGAN Architecture For Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels.	CoRR	2022	DBLP DOI BibTeX RDF
16	Minghan Chen, Chunrui Xu, Ziang Xu, Wei He, Haorui Zhang, Jing Su, Qianqian Song	Uncovering the dynamic effects of DEX treatment on lung cancer by integrating bioinformatic inference and multiscale modeling of scRNA-seq and proteomics data.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
16	Taimoor Khan, Muhammad Suleman, Syed Shujait Ali, Muhammad Farhan Sarwar, Imtiaz Ali, Liaqat Ali, Abbas Khan, Bakht Rokhan, Yanjing Wang 0003, Ruili Zhao, Dong-Qing Wei	Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction.	Comput. Biol. Medicine	2022	DBLP DOI BibTeX RDF
16	Fucai Zhang, Yejin Wu	Myocardial Proteomics Based on Smart Fog Computing and Its Application in Sports.	Comput. Intell. Neurosci.	2022	DBLP DOI BibTeX RDF
16	Marie Chion, Christine Carapito, Frédéric Bertrand	Accounting for multiple imputation-induced variability for differential analysis in mass spectrometry-based label-free quantitative proteomics.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
16	Marie Locard-Paulet, Oana Palasca, Lars Juhl Jensen	Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies.	PLoS Comput. Biol.	2022	DBLP DOI BibTeX RDF
16	Jingjing Liu, Xiaofeng Song, Chengchao Qiu, Siyi Wu	Label-free based proteomics analysis of tissue profiles reveals the pathogenesis of colorectal cancer.	ICBBS	2022	DBLP DOI BibTeX RDF
16	Jonathan He, Olivia Liu, Xuan Guo	Deep Learning Based MS2 Feature Detection for Data-Independent Shotgun Proteomics.	BIBM	2022	DBLP DOI BibTeX RDF
16	Sagar Patel, Chathurani Ranathunge, Lubna Pinky, Julius Nyalwidhe, O. John Semmes, Robert K. Armstrong, C. Donald Combs	PROMOR App: A web application for label-free quantification (LFQ) proteomics data analysis and predictive modeling.	BIBM	2022	DBLP DOI BibTeX RDF
16	Jiancheng Li, Chongle Pan, Xuan Guo	IDIA: An Integrative Signal Extractor for Data-Independent Acquisition Proteomics.	BIBM	2022	DBLP DOI BibTeX RDF
16	Omar Shouman, Wassim Gabriel, Victor-George Giurcoiu, Vitor Sternlicht, Mathias Wilhelm 0001	PROSPECT: Labeled Tandem Mass Spectrometry Dataset for Machine Learning in Proteomics.	NeurIPS	2022	DBLP BibTeX RDF
16	Xinyi Liu, Dong Wei, Haiyang Zhang, Jie Sun	An Integreated Method for Mass Spectrometry-based proteomics analysis of Single Cell by using online sample preparation on a monolithic column.	ICBET	2022	DBLP DOI BibTeX RDF
16	Ayse Berceste Dincer	Deep Learning for Transcriptomics and Proteomics		2022	RDF
16	Ralf Gabriels	Machine learning to the rescue: enabling novel proteomics workflows with data-driven bioinformatics methods.		2022	RDF
16	Chaimaa Messaoudi, Rachida Fissoune, Hassan Badir	IPDS: A semantic mediator-based system using Spark for the integration of heterogeneous proteomics data sources.	Concurr. Comput. Pract. Exp.	2021	DBLP DOI BibTeX RDF
16	Luonan Chen, Rong Fan, Fuchou Tang	Advanced Single-cell Omics Technologies and Informatics Tools for Genomics, Proteomics, and Bioinformatics Analysis.	Genom. Proteom. Bioinform.	2021	DBLP DOI BibTeX RDF
16	Xiulan Chen, Yaping Sun, Tingting Zhang, Lian Shu, Peter Roepstorff, Fuquan Yang	Quantitative Proteomics Using Isobaric Labeling: A Practical Guide.	Genom. Proteom. Bioinform.	2021	DBLP DOI BibTeX RDF
16	Sebastian Böcker, Rebekah L. Gundry, Lennart Martens, Magnus Palmblad	Computational Proteomics (Dagstuhl Seminar 21271).	Dagstuhl Reports	2021	DBLP DOI BibTeX RDF
16	Rachel Nadeau, Anastasiia Byvsheva, Mathieu Lavallée-Adam	PIGNON: a protein-protein interaction-guided functional enrichment analysis for quantitative proteomics.	BMC Bioinform.	2021	DBLP DOI BibTeX RDF
16	Yan Yan, Feng Jiang, Xinan Zhang, Tianhai Tian	Integrated Inference of Asymmetric Protein Interaction Networks Using Dynamic Model and Individual Patient Proteomics Data.	Symmetry	2021	DBLP DOI BibTeX RDF
16	Zainab Noor, Seong Beom Ahn, Mark S. Baker, Shoba Ranganathan, Abidali Mohamedali	Mass spectrometry-based protein identification in proteomics - a review.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
16	Mingyi Liu, Ashok Dongre	Proper imputation of missing values in proteomics datasets for differential expression analysis.	Briefings Bioinform.	2021	DBLP DOI BibTeX RDF
16	Muhammad Farhan Khalid, Kanzal Iman, Amna Ghafoor, Mujtaba Saboor, Ahsan Ali, Urwa Muaz, Abdul Rehman Basharat, Taha Tahir, Muhammad Abubakar, Momina Amer Akhter, Waqar Nabi, Wim Vanderbauwhede, Fayyaz Ahmad, Bilal Wajid, Safee Ullah Chaudhary	PERCEPTRON: an open-source GPU-accelerated proteoform identification pipeline for top-down proteomics.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
16	Evangelos Theodorakis, Andreas N. Antonakis, Ismini Baltsavia, Georgios A. Pavlopoulos, Martina Samiotaki, Grigoris D. Amoutzias, Theodosios Theodosiou, Oreste Acuto, Georgios Efstathiou, Ioannis Iliopoulos	ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics.	Nucleic Acids Res.	2021	DBLP DOI BibTeX RDF
16	Martin Rydén, Martin Englund, Neserin Ali	ProteoMill: efficient network-based functional analysis portal for proteomics data.	Bioinform.	2021	DBLP DOI BibTeX RDF
16	Xiaolong Cao, Jinchuan Xing	PrecisionProDB: improving the proteomics performance for precision medicine.	Bioinform.	2021	DBLP DOI BibTeX RDF
16	Diogo B. Lima, Mathieu Dupré, Magalie Duchateau, Quentin Giai Gianetto, Martial Rey, Mariette Matondo, Julia Chamot-Rooke	ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment.	Bioinform.	2021	DBLP DOI BibTeX RDF
16	Meng Wang, Lihua Jiang, Ruiqi Jian, Joanne Y. Chan, Qing Liu, Michael Snyder 0001, Hua Tang	RobNorm: model-based robust normalization method for labeled quantitative mass spectrometry proteomics data.	Bioinform.	2021	DBLP DOI BibTeX RDF
16	Muhammad Tahir Ul Qamar, Sajjad Ahmad, Israr Fatima, Faisal Ahmad, Farah Shahid, Anam Naz, Sumra Wajid Abbasi, Abbas Khan, Muhammad Usman Mirza, Usman Ali Ashfaq, Ling-Ling Chen	Designing multi-epitope vaccine against Staphylococcus aureus by employing subtractive proteomics, reverse vaccinology and immuno-informatics approaches.	Comput. Biol. Medicine	2021	DBLP DOI BibTeX RDF
16	R. W. Ludwig, Edward Lau	JCAST: Sample-specific protein isoform databases for mass spectrometry-based proteomics experiments.	Softw. Impacts	2021	DBLP DOI BibTeX RDF
16	Pol Castellano-Escuder, Raúl González-Domínguez, Francesc Carmona-Pontaque, Cristina Andres-Lacueva, Alex Sánchez-Pla	POMAShiny: A user-friendly web-based workflow for metabolomics and proteomics data analysis.	PLoS Comput. Biol.	2021	DBLP DOI BibTeX RDF
16	Arthur T. Kopylov, Denis V. Petrovsky, Alexander A. Stepanov 0002, Vladimir R. Rudnev, Kristina A. Malsagova, Tatyana V. Butkova, Natalya V. Zakharova, Georgy P. Kostyuk, Liudmila I. Kulikova, Dmitry V. Enikeev, Natalia V. Potoldykova, Dmitry A. Kulikov 0001, Alexey B. Zulkarnaev, Anna L. Kaysheva	Convolutional neural network in proteomics and metabolomics for determination of comorbidity between cancer and schizophrenia.	J. Biomed. Informatics	2021	DBLP DOI BibTeX RDF
16	Muaaz Gul Awan, Abdullah Gul Awan, Fahad Saeed	Benchmarking mass spectrometry based proteomics algorithms using a simulated database.	Netw. Model. Anal. Health Informatics Bioinform.	2021	DBLP DOI BibTeX RDF
16	Marwin Shraideh, Maximilian Schreieck	Requirements for Transferring Value from proteomics Research to Personalized Medicine: Insights from the current Tool Landscape.	ECIS	2021	DBLP BibTeX RDF
16	Giulia Campi, Giovanna Nicora, Giulia Fiorentino, Andrew Smith, Fulvio Magni, Silvia Garagna, Maurizio Zuccotti, Riccardo Bellazzi	A Topological Data Analysis Mapper of the Ovarian Folliculogenesis Based on MALDI Mass Spectrometry Imaging Proteomics.	AIME	2021	DBLP DOI BibTeX RDF
16	Sunung Kim, Sangkyun Noh, Hong Seo Ryoo	Identifying Combinatorial Significance for Classification of Alzheimer's Disease Proteomics Expression with Logical Analysis of Data.	BIBM	2021	DBLP DOI BibTeX RDF
16	Misbah Razzaq, Louisa Goumidi, Maria-Jesus Iglesias, Gaëlle Munsch, Maria Bruzelius, Manal Ibrahim-Kosta, Lynn Butler, Jacob Odeberg, Pierre-Emmanuel Morange, David Alexandre Tregouet	Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics.	CMSB	2021	DBLP DOI BibTeX RDF
16	Marwin Shraideh, Patroklos Samaras, Maximilian Schreieck, Helmut Krcmar	A Microservice-Based Reference Architecture for Digital Platforms in the Proteomics Domain.	DESRIST	2021	DBLP DOI BibTeX RDF
16	Adriano Martinelli, Aditya Kashyap, Anna Fomitcheva Khartchenko, Govind V. Kaigala, Maria Anna Rapsomaniki	Quantifying Spatial Tumor Heterogeneity Using Single-Cell Proteomics.	AMIA	2021	DBLP BibTeX RDF
16	Elizabeth Regina Alfaro-Espinoza, Lucas Ferreira Paiva, Alessandra C. Faria-Campos, Maria Cristina Baracat-Pereira, Sérgio Vale Aguiar Campos	FluxPRT: An Adaptable and Extensible Proteomics LIMS.	BSB	2021	DBLP DOI BibTeX RDF
16	Umair Mohammad, Fahad Saeed	Search feasibility in distributed MS-proteomics big data.	BCB	2021	DBLP DOI BibTeX RDF
16	Jianchen Ding	Proteomics and Radiomics in Diagnosis of Nasopharyngeal Carcinoma.	ICBRA	2021	DBLP DOI BibTeX RDF
16	Hélène Borges	Méthodes statistiques pour le traitement des données de protéomique quantitative longitudinale. (Statistical methods for the treatment of longitudinal data in quantitative proteomics).		2021	RDF
16	Tyler Wesley Bradshaw	Statistical Inference and Community Detection in Proximity and Spatial Proteomics: Resolving the Organization of the Neuronal Proteome.		2021	RDF
16	Jun Li 0051, Elizabeth A. Rettedal, Eric van der Helm, Mostafa Ellabaan, Gianni Panagiotou, Morten O. A. Sommer	Corrigendum to "Antibiotic Treatment Drives the Diversification of the Human Gut Resistome" [Genomics Proteomics Bioinformatics 17 (1) (2019) 39-51].	Genom. Proteom. Bioinform.	2020	DBLP DOI BibTeX RDF
16	Yue-Feng Wang, Qing Chao, Zhe Li 0018, Tian-Cong Lu, Hai-Yan Zheng, Cai-Feng Zhao, Zhuo Shen, Xiao-Hui Li, Bai-Chen Wang	Corrigendum to "Large-scale Identification and Time-course Quantification of Ubiquitylation Events During Maize Seedling De-etiolation" [Genomics Proteomics Bioinformatics 17 (6) (2019) 603-622].	Genom. Proteom. Bioinform.	2020	DBLP DOI BibTeX RDF
16	Antoine Buetti-Dinh, Malte Herold, Stephan Christel, Mohamed El Hajjami, Francesco Delogu, Olga Ilie, Sören Bellenberg, Paul Wilmes, Ansgar Poetsch, Wolfgang Sand, Mario Vera, Igor V. Pivkin, Ran Friedman, Mark Dopson	Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations.	BMC Bioinform.	2020	DBLP DOI BibTeX RDF
16	Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen, Karen Ross, Andrea Matlock, Jeremy Muhlich, Somchai Chutipongtanate, Jie Zheng 0001, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu 0001, Ajay Pillai, Avi Ma'ayan, Stephan C. Schürer, Michal Kouril, Mario Medvedovic, Jarek Meller	piNET: a versatile web platform for downstream analysis and visualization of proteomics data.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
16	Eric W. Deutsch, Nuno Bandeira, Vagisha Sharma, Yasset Pérez-Riverol, Jeremy Carver, Deepti Jaiswal Kundu, David García-Seisdedos, Andrew F. Jarnuczak, Suresh Hewapathirana, Benjamin S. Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Henning Hermjakob, Brendan MacLean, Michael J. MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaíno	The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.	Nucleic Acids Res.	2020	DBLP DOI BibTeX RDF
16	Wenbo Xu 0003, Yan Tian, Siye Wang, Yupeng Cui, Pier Luigi Martelli	Feature selection and classification of noisy proteomics mass spectrometry data based on one-bit perturbed compressed sensing.	Bioinform.	2020	DBLP DOI BibTeX RDF
16	David Bouyssié, Anne-Marie Hesse, Emmanuelle Mouton-Barbosa, Magali Rompais, Charlotte Macron, Christine Carapito, Anne Gonzalez de Peredo, Yohann Couté, Véronique Dupierris, Alexandre Burel, Jean-Philippe Menetrey, Andrea Kalaitzakis, Julie Poisat, Aymen Romdhani, Odile Burlet-Schiltz, Sarah Cianférani, Jerome Garin, Christophe Bruley	Proline: an efficient and user-friendly software suite for large-scale proteomics.	Bioinform.	2020	DBLP DOI BibTeX RDF
16	James Luke Gallant, Tiaan Heunis, Samantha Leigh Sampson, Wilbert Bitter	ProVision: a web-based platform for rapid analysis of proteomics data processed by MaxQuant.	Bioinform.	2020	DBLP DOI BibTeX RDF
16	Deepank R. Korandla, Jacob M. Wozniak, Anaamika Campeau, David J. Gonzalez, Erik Scott Wright	AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions.	Bioinform.	2020	DBLP DOI BibTeX RDF
16	Pavel Sulimov, Anastasia Voronkova, Attila Kertész-Farkas	Annotation of tandem mass spectrometry data using stochastic neural networks in shotgun proteomics.	Bioinform.	2020	DBLP DOI BibTeX RDF
16	Thang Viet Pham, Alex A. Henneman, Connie R. Jimenez	iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics.	Bioinform.	2020	DBLP DOI BibTeX RDF
16	Jeya Shree Thulasidas, Gowri Sree Varadarajan, Ignacio G. Camarillo, Uma K. Aryal, Lakshya Mittal, Raji Sundararajan	Label-free, Quantitative proteomics study of human triple negative cancer MDA-MB-231 cells treated by Electrochemotherapy with tomato lipophilic extract - Supplementary data.		2020	DOI RDF
16	Mark Lennox, Neil Robertson 0002, Barry Devereux	Deep Metric Learning for Proteomics.	ICMLA	2020	DBLP DOI BibTeX RDF
16	Shiyu Lin	Recent Insights into Proteomics in Plant Pathology.	ICBBE	2020	DBLP DOI BibTeX RDF
16	Mohsen Paryavi, Richie Chio, M. Arifur Rahman, Iain MacPherson, Aaron T. Ohta	Towards High-Throughput Single-Cell Proteomics Using Droplet Microfluidics.	NEMS	2020	DBLP DOI BibTeX RDF
16	Biraja Ghoshal, Cecilia Lindskog, Allan Tucker	Estimating Uncertainty in Deep Learning for Reporting Confidence: An Application on Cell Type Prediction in Testes Based on Proteomics.	IDA	2020	DBLP DOI BibTeX RDF
16	Tomasz Arodz	Biological Network Visualization for Targeted Proteomics Based on Mean First-Passage Time in Semi-Lazy Random Walks.	ICCS (3)	2020	DBLP DOI BibTeX RDF
16	Etienne Dubois, Antonio Núñez Galindo, Loïc Dayon, Ornella Cominetti	Comparison of normalization methods in clinical research applications of mass spectrometry-based proteomics.	CIBCB	2020	DBLP DOI BibTeX RDF
16	Weidong Xie, Linjie Wang, Kun Yu, Wei Li 0117	A Machine Learning Approach to Biomarker Screening on Proteomics Data of Cleft Lip and Palate.	ISICDM	2020	DBLP DOI BibTeX RDF
16	Mariano Ezequiel Mirabelli, Pedro García López, Gil Vernik	Bringing scaling transparency to Proteomics applications with serverless computing.	WOSC@Middleware	2020	DBLP DOI BibTeX RDF
16	Huaming Chen, Fucun Li, Geng Sun 0002, Xuyun Zhang, Xianjun Dong, Lei Wang 0001, Kewen Liao, Haifeng Shen, Jun Shen 0001	A Service Computing Framework for Proteomics Analysis and Collaboration of Pathogenic Mechanism Studies.	SCC	2020	DBLP DOI BibTeX RDF
16	Thibault Robin	Proteomics Data Representation and Databases.	Encyclopedia of Bioinformatics and Computational Biology (2)	2019	DBLP DOI BibTeX RDF
16	Aivett Bilbao	Proteomics Mass Spectrometry Data Analysis Tools.	Encyclopedia of Bioinformatics and Computational Biology (2)	2019	DBLP DOI BibTeX RDF
16	Marwenie F. Petalcorin, Naeem Shafqat, Zen H. Lu, Mark I. R. Petalcorin	Clinical Proteomics.	Encyclopedia of Bioinformatics and Computational Biology (3)	2019	DBLP DOI BibTeX RDF
16	Xiaofei Wang, Hehong Wei, Xuemei Mao, Jin Liu	Proteomics Analysis of Lipid Droplets from the Oleaginous Alga Chromochloris zofingiensis Reveals Novel Proteins for Lipid Metabolism.	Genom. Proteom. Bioinform.	2019	DBLP DOI BibTeX RDF
16	Nuno Bandeira, Lennart Martens	Computational Proteomics (Dagstuhl Seminar 19351).	Dagstuhl Reports	2019	DBLP DOI BibTeX RDF
16	Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul D. W. Kirk, Laurent Gatto	A Bioconductor workflow for the Bayesian analysis of spatial proteomics.	F1000Research	2019	DBLP DOI BibTeX RDF
16	Yuntong Li, Teresa W.-M. Fan, Andrew N. Lane, Woo-Young Kang, Susanne M. Arnold, Arnold J. Stromberg, Chi Wang 0003, Li Chen	SDA: a semi-parametric differential abundance analysis method for metabolomics and proteomics data.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
16	Philip Berg, Evan W. McConnell, Leslie M. Hicks, Sorina C. Popescu, George V. Popescu	Evaluation of linear models and missing value imputation for the analysis of peptide-centric proteomics.	BMC Bioinform.	2019	DBLP DOI BibTeX RDF
16	Girolamo Giudice, Evangelia Petsalaki	Proteomics and phosphoproteomics in precision medicine: applications and challenges.	Briefings Bioinform.	2019	DBLP DOI BibTeX RDF
16	Wilson Wen Bin Goh, Limsoon Wong	Advanced bioinformatics methods for practical applications in proteomics.	Briefings Bioinform.	2019	DBLP DOI BibTeX RDF
16	Michael Böhm, Andreas Bohne-Lang, Martin Frank, Alexander Loß, Miguel A. Rojas-Macias, Thomas Lütteke	Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update).	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
16	Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama	The jPOST environment: an integrated proteomics data repository and database.	Nucleic Acids Res.	2019	DBLP DOI BibTeX RDF
16	Magnus Palmblad, Anna-Lena Lamprecht, Jon C. Ison, Veit Schwämmle	Automated workflow composition in mass spectrometry-based proteomics.	Bioinform.	2019	DBLP DOI BibTeX RDF
16	Kai Li, Marc Vaudel, Bing Zhang, Yan Ren, Bo Wen	PDV: an integrative proteomics data viewer.	Bioinform.	2019	DBLP DOI BibTeX RDF
16	Cheng Chang, Mansheng Li, Chaoping Guo, Yuqing Ding, Kaikun Xu, Mingfei Han 0001, Fuchu He, Yunping Zhu	PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis.	Bioinform.	2019	DBLP DOI BibTeX RDF
16	Marco Trevisan-Herraz, Navratan Bagwan, Fernando García-Marqués, Jose Manuel Rodriguez, Inmaculada Jorge, Iakes Ezkurdia, Elena Bonzon-Kulichenko, Jesús Vázquez	SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments.	Bioinform.	2019	DBLP DOI BibTeX RDF
16	Gang Peng 0004, Rashaun Wilson, Yishuo Tang, TuKiet T. Lam, Angus C. Nairn, Kenneth R. Williams, Hongyu Zhao 0003	ProteomicsBrowser: MS/proteomics data visualization and investigation.	Bioinform.	2019	DBLP DOI BibTeX RDF
16	Diogo B. Lima, André Ramos Fernandes Da Silva, Mathieu Dupré, Marlon D. M. Santos, Milan A. Clasen, Louise U. Kurt, Priscila F. Aquino, Valmir C. Barbosa, Paulo C. Carvalho, Julia Chamot-Rooke	Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra.	Bioinform.	2019	DBLP DOI BibTeX RDF
16	Ana S. C. Silva, Robbin Bouwmeester, Lennart Martens, Sven Degroeve	Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions.	Bioinform.	2019	DBLP DOI BibTeX RDF
16	Yaxing Zhao, Andrew Chi-Hau Sue, Wilson Wen Bin Goh	Deeper investigation into the utility of functional class scoring in missing protein prediction from proteomics data.	J. Bioinform. Comput. Biol.	2019	DBLP DOI BibTeX RDF
16	Thomas J. Bauer, Erich Alfred Gombocz, Marcus Krüger, Jayashree Sahana, Thomas J. Corydon, Johann Bauer, Manfred Infanger, Daniela Grimm	Augmenting cancer cell proteomics with cellular images - A semantic approach to understand focal adhesion.	J. Biomed. Informatics	2019	DBLP DOI BibTeX RDF
16	Sahar Iravani, Tim O. F. Conrad	Deep Learning for Proteomics Data for Feature Selection and Classification.	CD-MAKE	2019	DBLP DOI BibTeX RDF
16	Muhammad Haseeb, Fatima Afzali, Fahad Saeed	LBE: A Computational Load Balancing Algorithm for Speeding up Parallel Peptide Search in Mass-Spectrometry Based Proteomics.	IPDPS Workshops	2019	DBLP DOI BibTeX RDF
16	Ehsaneddin Asgari	Life Language Processing: Deep Learning-based Language-agnostic Processing of Proteomics, Genomics/Metagenomics, and Human Languages.		2019	RDF
16	Johannes Veit	Efficient Workflows for Analyzing High-Performance Liquid Chromatography Mass Spectrometry-Based Proteomics Data		2019	RDF
16	Anna Ressa	Investigating molecular factors regulating cancer biology: from proteomics to multi-omics.		2019	RDF