Search results for "BMC"

Hits ?▲	Authors	Title	Venue	Year	Link
6	Shangru Li, Xiangpeng Meng, Rui Li, Bingding Huang, Xin Wang	NanoBERTa-ASP: predicting nanobody paratope based on a pretrained RoBERTa model.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Andrew Zheng, Jim Shaw, Yun William Yu	Mora: abundance aware metagenomic read re-assignment for disentangling similar strains.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Claus Vogl, Mariia Karapetiants, Burçin Yildirim, Hrönn Kjartansdóttir, Carolin Kosiol, Juraj Bergman, Michal Majka, Lynette Caitlin Mikula	Inference of genomic landscapes using ordered Hidden Markov Models with emission densities (oHMMed).	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Benedikt Venn, Thomas Leifeld, Ping Zhang 0022, Timo Mühlhaus	Temporal classification of short time series data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Honglei Wang, Tao Huang, Dong Wang, Wenliang Zeng, Yanjing Sun, Lin Zhang 0015	MSCAN: multi-scale self- and cross-attention network for RNA methylation site prediction.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	J. Ludwig, Jan Mrázek	OrthoRefine: automated enhancement of prior ortholog identification via synteny.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Lifei Wang, Rui Nie, Xuexia Miao, Yankai Cai, Anqi Wang, Hanwen Zhang, Jiang Zhang 0006, Jun Cai	InClust+: the deep generative framework with mask modules for multimodal data integration, imputation, and cross-modal generation.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jorge Beltrán, Lisandra Herrera Belén, Fernanda Parraguez Contreras, Jorge G. Farias, Jorge Machuca-Sepúlveda, Stefania Short	MultiToxPred 1.0: a novel comprehensive tool for predicting 27 classes of protein toxins using an ensemble machine learning approach.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jesse R. Walsh, Guangchao Sun, Jagadheshwar Balan, Jayson Hardcastle, Jason Vollenweider, Calvin Jerde, Kandelaria Rumilla, Christy Koellner, Alaa Koleilat, Linda Hasadsri, Benjamin Kipp, W. Garrett Jenkinson, Eric W. Klee	A supervised learning method for classifying methylation disorders.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Wei Han, Sanguo Zhang, Hailong Gao, Deliang Bu	Clustering on hierarchical heterogeneous data with prior pairwise relationships.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Steven Gore, Bailey Meche, Danyang Shao, Benjamin Ginnett, Kelly Zhou, Rajeev K. Azad	DiseaseNet: a transfer learning approach to noncommunicable disease classification.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Xu Zhang, Ya Su, Andrew N. Lane, Arnold J. Stromberg, Teresa W.-M. Fan, Chi Wang 0003	Correction: Bayesian kinetic modeling for tracer-based metabolomic data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	H. M. A. Mohit Chowdhury, Terrance E. Boult, Oluwatosin Oluwadare	Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Sagara N. S. Gurusinghe, Julia M. Shifman	Cold Spot SCANNER: Colab Notebook for predicting cold spots in protein-protein interfaces.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Edwin Alvarez-Mamani, Reinhard Dechant, César Armando Beltrán Castañón, Alfredo J. Ibáñez	Graph embedding on mass spectrometry- and sequencing-based biomedical data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Dengju Yao, Bailin Li, Xiaojuan Zhan, Xiaorong Zhan, Liyang Yu	GCNFORMER: graph convolutional network and transformer for predicting lncRNA-disease associations.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Rose-Marie Fraboulet, Yanis Si Ahmed, Marc Aubry, Sebastien Corre, Marie-Dominique Galibert, Yuna Blum	Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan	MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Sheikh Hasib Ahmed, Dibyendu Brinto Bose, Rafi Khandoker, M. Saifur Rahman	StackDPP: a stacking ensemble based DNA-binding protein prediction model.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, Karoline Faust	Predicting microbial interactions with approaches based on flux balance analysis: an evaluation.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Donny Chan, Graham L. Cromar, Billy Taj, John Parkinson	Cell4D: a general purpose spatial stochastic simulator for cellular pathways.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Mahmoud Gamal, Marwa A. Ibrahim	Introducing the f0% method: a reliable and accurate approach for qPCR analysis.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Tay Xin Hui, Shahreen Kasim, Izzatdin Abdul Aziz, Mohd Farhan Md Fudzee, Nazleeni Samiha Haron, Tole Sutikno, Rohayanti Hassan, Hairulnizam Mahdin, Seah Choon Sen	Robustness evaluations of pathway activity inference methods on gene expression data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Abigail Glascock, Eric Waltari, Gytis Dudas, Joan Wong, Vida Ahyong	PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Neda Emami, Reza Ferdousi	HormoNet: a deep learning approach for hormone-drug interaction prediction.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Tianhua Yao, Xicheng Chen, Haojia Wang, Chengcheng Gao, Jia Chen, Dali Yi, Zeliang Wei, Ning Yao, Yang Li, Dong Yi, Yazhou Wu	Deep evolutionary fusion neural network: a new prediction standard for infectious disease incidence rates.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Michael A. Reiter, Julia A. Vorholt	Dashing Growth Curves: a web application for rapid and interactive analysis of microbial growth curves.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Akram Ashyani, Yu-Heng Wu, Huan-Wei Hsu, Torbjörn E. M. Nordling	Ideal adaptive control in biological systems: an analysis of $\mathbb {P}$-invariance and dynamical compensation properties.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini, Masoud Garshasbi, Javad Zahiri	123VCF: an intuitive and efficient tool for filtering VCF files.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Seungjun Ahn, Somnath Datta	Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Yongwen Zhuang, Na Yeon Kim, Lars G. Fritsche, Bhramar Mukherjee, Seunggeun Lee	Incorporating functional annotation with bilevel continuous shrinkage for polygenic risk prediction.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	David Rojas-Velazquez, Sarah Kidwai, Aletta D. Kraneveld, Alberto Tonda, Daniel L. Oberski, Johan Garssen, Alejandro Lopez Rincon	Methodology for biomarker discovery with reproducibility in microbiome data using machine learning.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Theresa Scharl, Bettina Grün	A clustering procedure for three-way RNA sequencing data using data transformations and matrix-variate Gaussian mixture models.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Sedighe Rastaghi, Azadeh Saki, Hamed Tabesh	Correction: Modifying the false discovery rate procedure based on the information theory under arbitrary correlation structure and its performance in high-dimensional genomic data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jing Chen, Haoyu Wu, Ning Wang	KEGG orthology prediction of bacterial proteins using natural language processing.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Ali Hakem Alsaeedi, Haider Hameed R. Al-Mahmood, Zainab Fahad Alnaseri, Mohammad R. Aziz, Dhiah Al-Shammary, Ayman Ibaida, Khandakar Ahmed	Fractal feature selection model for enhancing high-dimensional biological problems.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Joel Nulsen, Nosheen Hussain, Aws Al-Deka, Jason Yap, Khalil Uddin, Christopher Yau, Ahmed Ashour Ahmed	Correction: Completing a genomic characterisation of microscopic tumour samples with copy number.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Zachary L. Maas, Robin D. Dowell	Internal and external normalization of nascent RNA sequencing run-on experiments.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Hua Chai, Siyin Lin, Junqi Lin, Minfan He, Yuedong Yang, Yongzhong OuYang, Huiying Zhao	An uncertainty-based interpretable deep learning framework for predicting breast cancer outcome.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Hengkang Wang, Han Lu, Ju Sun, Sandra E. Safo	Interpretable deep learning methods for multiview learning.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Chuanqi Lao, Pengfei Zheng, Hongyang Chen, Qiao Liu, Feng An, Zhao Li	DeepAEG: a model for predicting cancer drug response based on data enhancement and edge-collaborative update strategies.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Junjie Shen 0010, Shuo Wang, Yongfei Dong, Hao Sun, Xichao Wang, Zaixiang Tang	A non-negative spike-and-slab lasso generalized linear stacking prediction modeling method for high-dimensional omics data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Terrence R. Ernst, John D. Blischak, Paul Nordlund, Joe Dalen, Justin Moore, Akshay Bhamidipati, Pankaj Dwivedi, Joe LoGrasso, Marco Rocha Curado, Brett Warren Engelmann	OmicNavigator: open-source software for the exploration, visualization, and archival of omic studies.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jasper van Bemmelen, Davida S. Smyth, Jasmijn A. Baaijens	Amplidiff: an optimized amplicon sequencing approach to estimating lineage abundances in viral metagenomes.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Yongjian Guan, Chang-Qing Yu, Li-Ping Li, Zhu-Hong You, Weixiao Meng 0001, Xin-Fei Wang, Chen Yang, Lu-Xiang Guo	MHESMMR: a multilevel model for predicting the regulation of miRNAs expression by small molecules.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Qingru Xu, Xiaoqiong Bao, Zhuobin Lin, Lin Tang, Li-na He, Jian Ren 0002, Zhixiang Zuo, Kunhua Hu	AStruct: detection of allele-specific RNA secondary structure in structuromic probing data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Eli J. Draizen, John Readey, Cameron Mura, Philip E. Bourne	Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Yunyun Dong, Yunqing Chang, Yuxiang Wang, Qixuan Han, Xiaoyuan Wen, Ziting Yang, Yan Zhang, Yan Qiang, Kun Wu, Xiaole Fan, Xiaoqiang Ren	MFSynDCP: multi-source feature collaborative interactive learning for drug combination synergy prediction.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Haiou Qi, Ting Yu, Wenwen Yu, Chenxi Liu	Drug-target affinity prediction with extended graph learning-convolutional networks.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Yiran Huang, Pingfan Zeng, Cheng Zhong	Classifying breast cancer subtypes on multi-omics data via sparse canonical correlation analysis and deep learning.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jamshaid A. Shahir, Natalie Stanley, Jeremy E. Purvis	Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Ghanshyam Verma, Dietrich Rebholz-Schuhmann, Michael G. Madden	Enabling personalised disease diagnosis by combining a patient's time-specific gene expression profile with a biomedical knowledge base.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Wenyuan Sun, Kyongson Jon, Wensheng Zhu	Multiple phenotype association tests based on sliced inverse regression.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Xiaotian Wu, Wenju Hou, Ziqi Zhao, Lan Huang 0002, Nan Sheng, Qixing Yang, Shuangquan Zhang, Yan Wang 0028	MMGAT: a graph attention network framework for ATAC-seq motifs finding.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Louis J. M. Aslett, Ryan R. Christ	kalis: a modern implementation of the Li & Stephens model for local ancestry inference in R.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Tingpeng Yang, Yu Wang, Yonghong He	TEC-miTarget: enhancing microRNA target prediction based on deep learning of ribonucleic acid sequences.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Arnab Kole, Arup Kumar Bag, Anindya Jyoti Pal, Debashis De	Generic model to unravel the deeper insights of viral infections: an empirical application of evolutionary graph coloring in computational network biology.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jean-Noël Lorenzi, François Graner, Virginie Courtier-Orgogozo, Guillaume Achaz	CNCA aligns small annotated genomes.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Huanrong Tang, Yaowu Wang, Jianquan Ouyang, Jinlin Wang	Simcryocluster: a semantic similarity clustering method of cryo-EM images by adopting contrastive learning.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Alireza Dehghan, Karim Abbasi, Parvin Razzaghi, Hossein Banadkuki, Sajjad Gharaghani	CCL-DTI: contributing the contrastive loss in drug-target interaction prediction.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jianqiao Hu, Sai Luo, Ming Tian, Adam Yongxin Ye	TrieDedup: a fast trie-based deduplication algorithm to handle ambiguous bases in high-throughput sequencing.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Karl Johan Westrin, Warren Kretzschmar, Olof Emanuelsson	ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Dong Wang, Jie Li 0055, Edwin Wang, Yadong Wang	DVA: predicting the functional impact of single nucleotide missense variants.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Leonardo Giannantoni, Roberta Bardini, Alessandro Savino, Stefano Di Carlo	Biology System Description Language (BiSDL): a modeling language for the design of multicellular synthetic biological systems.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Hanwen Xing, Christopher Yau	Bayesian inference for identifying tumour-specific cancer dependencies through integration of ex-vivo drug response assays and drug-protein profiling.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Qian Liu, Qiang Hu, Song Liu, Alan David Hutson, Martin Morgan	ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Weiming He, Lian Xu, JingXian Wang, Zhen Yue, Yi Jing, Shuaishuai Tai, Jian Yang, Xiaodong Fang	VCF2PCACluster: a simple, fast and memory-efficient tool for principal component analysis of tens of millions of SNPs.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	William L. Harrigan, Barbra D. Ferrell, K. Eric Wommack, Shawn W. Polson, Zachary D. Schreiber, Mahdi Belcaid	Improvements in viral gene annotation using large language models and soft alignments.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Mehmet Arif Ergun, Omer Cinal, Berkant Bakisli, Abdullah Asim Emül, Mehmet Baysan	COSAP: Comparative Sequencing Analysis Platform.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Shota Nose, Hirotsugu Shiroma, Takuji Yamada, Yushi Uno	QNetDiff: a quantitative measurement of network rewiring.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Xue-Qin Chen, Jie Ma, Di Xu, Zuo-Lin Xiang	Correction: Comprehensive analysis of KLF2 as a prognostic biomarker associated with fibrosis and immune infiltration in advanced hepatocellular carcinoma.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Kevin Z. Lin, Yixuan Qiu, Kathryn Roeder	eSVD-DE: cohort-wide differential expression in single-cell RNA-seq data using exponential-family embeddings.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Muhammad Arif 0012, Ge Fang, Ali Ghulam, Saleh Musleh, Tanvir Alam	DPI_CDF: druggable protein identifier using cascade deep forest.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Sahar Mohseni-Takalloo, Hadis Mohseni, Hassan Mozaffari-Khosravi, Masoud Mirzaei, Mahdieh Hosseinzadeh	The effect of data balancing approaches on the prediction of metabolic syndrome using non-invasive parameters based on random forest.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Il-Youp Kwak, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Daniel J. Garry, Jianyi Zhang, Wuming Gong	Proformer: a hybrid macaron transformer model predicts expression values from promoter sequences.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	James M. Dolezal, Sara Kochanny, Emma C. Dyer, Siddhi Ramesh, Andrew Srisuwananukorn, Matteo Sacco, Frederick M. Howard, Anran Li, Prajval Mohan, Alexander T. Pearson	Slideflow: deep learning for digital histopathology with real-time whole-slide visualization.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Xiaoping Min, Chongzhou Yang, Jun Xie, Yang Huang, Nan Liu, Xiaocheng Jin, Tianshu Wang, Zhibo Kong, Xiaoli Lu, Shengxiang Ge, Jun Zhang, Ningshao Xia	Tpgen: a language model for stable protein design with a specific topology structure.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Patrick Blumenkamp, Max Pfister, Sonja Diedrich, Karina Brinkrolf, Sebastian Jaenicke, Alexander Goesmann	Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Naghme Nazer, Mohammad Hossein Sepehri, Hoda Mohammadzade, Mahya Mehrmohamadi	A novel approach toward optimal workflow selection for DNA methylation biomarker discovery.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Youngjun Park, Anne-Christin Hauschild	The effect of data transformation on low-dimensional integration of single-cell RNA-seq.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Renjing Liu, Kun Qian, Xinwei He, Hongwei Li	Integration of scRNA-seq data by disentangled representation learning with condition domain adaptation.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto 0001	HIHISIV: a database of gene expression in HIV and SIV host immune response.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Amira Sami, Sara El-Metwally, M. Z. Rashad	MAC-ErrorReads: machine learning-assisted classifier for filtering erroneous NGS reads.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jing Zhu, Chao Che, Hao Jiang, Jian Xu, Jiajun Yin, Zhaoqian Zhong	SSF-DDI: a deep learning method utilizing drug sequence and substructure features for drug-drug interaction prediction.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Vincent Y. Pappalardo, Leyla Azarang, Egija Zaura, Bernd W. Brandt, Renée X. de Menezes	A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Ornella Irrera, Stefano Marchesin 0001, Gianmaria Silvello	MetaTron: advancing biomedical annotation empowering relation annotation and collaboration.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Pedro A. Saa, Sebastian Zapararte, Christopher C. Drovandi, Lars K. Nielsen	LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Ruimin Wang, Hengxuan Jiang, Miaoshan Lu, Junjie Tong, Shaowei An, Jinyin Wang, Changbin Yu	MRMPro: a web-based tool to improve the speed of manual calibration for multiple reaction monitoring data analysis by mass spectrometry.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Phuong-Nam Nguyen	Biomarker discovery with quantum neural networks: a case-study in CTLA4-activation pathways.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Chengzhou Wu, Xichen Mou, Hongmei Zhang	Gbdmr: identifying differentially methylated CpG regions in the human genome via generalized beta regressions.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Hyunwhan Joe, Hong-Gee Kim	Multi-label classification with XGBoost for metabolic pathway prediction.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Gang Tu, Xuan Wang, Rong Xia, Bowen Song	m6A-TCPred: a web server to predict tissue-conserved human m6A sites using machine learning approach.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jason R. Miller, Donald A. Adjeroh	Machine learning on alignment features for parent-of-origin classification of simulated hybrid RNA-seq.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Jody Clements, Cristian Goina, Philip M. Hubbard, Takashi Kawase, Donald J. Olbris, Hideo Otsuna, Robert Svirskas, Konrad Rokicki	NeuronBridge: an intuitive web application for neuronal morphology search across large data sets.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Anna Kravchenko, Sjoerd Jacob de Vries, Malika Smaïl-Tabbone, Isaure Chauvot de Beauchêne	HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Kimberly To, Judy Strickland, Emily Reinke, Alexandre Borrel, Jim Truax, Heather Maldonado, David G. Allen, Nicole C. Kleinstreuer	Computational application of internationally harmonized defined approaches to skin sensitization: DASS App.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Valentina Crippa, Emanuela Fina, Daniele Ramazzotti, Rocco Piazza	Control-FREEC viewer: a tool for the visualization and exploration of copy number variation data.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Luan Pinto Rabelo, Davidson Sodré, Rodrigo Petry Corrêa de Sousa, Luciana Watanabe, Grazielle Gomes, Iracilda Sampaio, Marcelo Vallinoto	SynGenes: a Python class for standardizing nomenclatures of mitochondrial and chloroplast genes and a web form for enhancing searches for evolutionary analyses.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Li Pan, Haoyue Wang, Bo Yang, Wenbin Li 0005	A protein network refinement method based on module discovery and biological information.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF
6	Gao-Fei Wang, Longying Shen	Cauchy hyper-graph Laplacian nonnegative matrix factorization for single-cell RNA-sequencing data analysis.	BMC Bioinform.	2024	DBLP DOI BibTeX RDF