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Results
Found 16824 publication records. Showing 16824 according to the selection in the facets
| Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
| 1 | Qinhu Zhang, Pengrui Teng, Siguo Wang, Ying He, Zhen Cui, Zhenghao Guo, Yixin Liu, Changan Yuan 0001, Qi Liu 0019, De-Shuang Huang |
Computational prediction and characterization of cell-type-specific and shared binding sites.  |
Bioinform.  |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Erwan Moreau |
Literature-based discovery: addressing the issue of the subpar evaluation methodology. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: Continuous chromatin state feature annotation of the human epigenome. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Raulia Syrlybaeva, Eva-Maria Strauch |
Deep learning of protein sequence design of protein-protein interactions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dat Thanh Nguyen |
An integrative pipeline for circular RNA quantitative trait locus discovery with application in human T cells. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yan Zhu 0006, Lingling Zhao, Naifeng Wen, Junjie Wang 0005, Chunyu Wang |
DataDTA: a multi-feature and dual-interaction aggregation framework for drug-target binding affinity prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Haifan Gong, Yumeng Zhang, Chenhe Dong, Yue Wang, Guanqi Chen, Bilin Liang, Haofeng Li, Lanxuan Liu, Jie Xu, Guanbin Li |
Unbiased curriculum learning enhanced global-local graph neural network for protein thermodynamic stability prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jessica A. Lavery, Samantha Brown, Michael Curry, Axel Martin, Daniel D. Sjoberg, Karissa Whiting |
A data processing pipeline for the AACR project GENIE biopharma collaborative data with the {genieBPC} R package. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Lucas Prates, Renan B. Lemes, Tábita Hünemeier, Florencia G. Leonardi |
Population-based change-point detection for the identification of homozygosity islands. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bo-Wei Zhao, Xiao-Rui Su, Peng-Wei Hu, Yu-An Huang, Zhu-Hong You, Lun Hu |
iGRLDTI: an improved graph representation learning method for predicting drug-target interactions over heterogeneous biological information network. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Runzhou Yu, Dehan Cai, Yanni Sun |
AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kazim Kivanç Eren, Esra Çinar, Hamza Umut Karakurt, Arzucan Özgür |
Improving the filtering of false positive single nucleotide variations by combining genomic features with quality metrics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Noriaki Sato, Miho Uematsu, Kosuke Fujimoto, Satoshi Uematsu, Seiya Imoto |
ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Abhijit Mondal, Luiz Thibério Rangel, Jack G. Payette, Gregory Fournier, Mukul S. Bansal |
DaTeR: error-correcting phylogenetic chronograms using relative time constraints. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhourun Wu, Mingyue Guo, Xiaopeng Jin, Junjie Chen 0004, Bin Liu 0014 |
CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alessio Del Conte, Alexander Miguel Monzon, Damiano Clementel, Giorgia F. Camagni, Giovanni Minervini, Silvio C. E. Tosatto, Damiano Piovesan |
RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Minhyuk Park, Stefan Ivanovic, Gillian Chu, Chengze Shen, Tandy J. Warnow |
UPP2: fast and accurate alignment of datasets with fragmentary sequences. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Marek S. Wiewiórka, Agnieszka Szmurlo, Pawel Stankiewicz, Tomasz Gambin |
Cloud-native distributed genomic pileup operations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Tianqi Wu, Zhiye Guo, Jianlin Cheng |
Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph transformer. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Anda Ramona Tanasie, Peter Kerpedjiev, Stefan Hammer, Stefan Badelt |
DrForna: visualization of cotranscriptional folding. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Patrick Gohl, Jaume Bonet, Oriol Fornes, Joan Planas-Iglesias, Narcis Fernandez-Fuentes, Baldo Oliva |
SBILib: a handle for protein modeling and engineering. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Manuel Huth, Jonas Arruda, Roy Gusinow, Lorenzo Contento, Evelina Tacconelli, Jan Hasenauer |
Accessibility of covariance information creates vulnerability in Federated Learning frameworks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Teresa De Jesus Martinez, Elliot A. Hershberg, Emma Guo, Garrett Stevens, Colin M. Diesh, Peter Xie, Caroline Bridge, Scott Cain, Robin Haw, Robert M. Buels, Lincoln D. Stein, Ian H. Holmes |
JBrowse Jupyter: a Python interface to JBrowse 2. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nolan H. Hamilton, Terrence S. Furey |
ROCCO: a robust method for detection of open chromatin via convex optimization. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ha Vu, Zane Koch, Petko Fiziev, Jason Ernst |
A framework for group-wise summarization and comparison of chromatin state annotations. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sandra Romain, Claire Lemaitre |
SVJedi-graph: improving the genotyping of close and overlapping structural variants with long reads using a variation graph. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Elisabeth Coudert, Sebastien Gehant, Edouard De Castro, Monica Pozzato, Delphine Baratin, Teresa Batista Neto, Christian J. A. Sigrist, Nicole Redaschi, Alan Bridge, Alan J. Bridge, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Blanca Cabrera Gil, Cristina Casals-Casas, Kamal Chikh Echioukh, Béatrice A. Cuche, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Pascale Gaudet, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Arnaud Kerhornou, Philippe Le Mercier, Damien Lieberherr, Patrick Masson, Anne Morgat, Venkatesh Muthukrishnan, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Sylvain Poux, Manuela Pruess, Catherine Rivoire, Karin Sonesson, Shyamala Sundaram, Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Hema Bye-A-Jee, Austra Cukura, Paul Denny 0002, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Penelope Garmiri, Leonardo Jose da Costa Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Vishal Joshi, Dushyanth Jyothi, Swaathi Kandasamy, Antonia Lock, Aurelien Luciani, Marija Lugaric, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Alok Mishra 0004, Katie Moulang, Andrew Nightingale, Sangya Pundir, Guoying Qi, Shriya Raj, Pedro Raposo, Daniel Rice, Rabie Saidi, Rafael Santos, Elena Speretta, James D. Stephenson, Prabhat Totoo, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang 0003, Yuqi Wang |
Annotation of biologically relevant ligands in UniProtKB using ChEBI. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yann Ponty, Sushmita Roy |
ISMB/ECCB 2023 proceedings. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dingquan Yu, Grzegorz Chojnowski, Maria Rosenthal, Jan Kosinski |
AlphaPulldown - a python package for protein-protein interaction screens using AlphaFold-Multimer. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Piotr Wlodzimierz, Michael Hong, Ian R. Henderson |
TRASH: Tandem Repeat Annotation and Structural Hierarchy. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Irbaz I Badshah, Pedro R. Cutillas |
Systematic identification of biochemical networks in cancer cells by functional pathway inference analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Addie Woicik, Mingxin Zhang, Hanwen Xu, Sara Mostafavi, Sheng Wang |
Gemini: memory-efficient integration of hundreds of gene networks with high-order pooling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fandi Wu, Xiaoyang Jing, Xiao Luo, Jinbo Xu |
Improving protein structure prediction using templates and sequence embedding. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Moctard Babatounde Oloulade, Jianliang Gao, Jiamin Chen, Raeed Al-Sabri, Zhenpeng Wu |
Cancer drug response prediction with surrogate modeling-based graph neural architecture search. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Parnal Joshi, Sagnik Banerjee, Xiao Hu, Pranav M. Khade, Iddo Friedberg |
GOThresher: a program to remove annotation biases from protein function annotation datasets. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Palle Duun Rohde, Izel Fourie Sørensen, Peter Sørensen |
Expanded utility of the R package, qgg, with applications within genomic medicine. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Afshan Nabi, Berke Dilekoglu, Ogun Adebali, Öznur Tastan |
Discovering misannotated lncRNAs using deep learning training dynamics. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Qijie Chen, Haotong Sun, Haoyang Liu, Yinghui Jiang, Ting Ran, Xurui Jin, Xianglu Xiao, Zhimin Lin, Hongming Chen 0001, Zhangming Niu |
An extensive benchmark study on biomedical text generation and mining with ChatGPT. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xiaoming Xu, Zekun Yin, Lifeng Yan, Huiguang Yi, Hua Wang, Bertil Schmidt, Weiguo Liu |
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alexandru Dumitrescu, Emmi Jokinen, Anja Paatero, Juho Kellosalo, Ville O. Paavilainen, Harri Lähdesmäki |
TSignal: a transformer model for signal peptide prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yujie Guo, Xiaowen Feng, Heng Li |
Evaluation of haplotype-aware long-read error correction with hifieval. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fernando H. C. Dias, Manuel Cáceres, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu |
A safety framework for flow decomposition problems via integer linear programming. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Michael Shaffer, Mikayla A. Borton, Ben Bolduc, José P. Faria, Rory M. Flynn, Parsa Ghadermazi, Janaka N. Edirisinghe, Elisha M. Wood-Charlson, Christopher S. Miller, Siu Hung Joshua Chan, Matthew B. Sullivan, Christopher S. Henry, Kelly C. Wrighton |
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: HOMELETTE: a unified interface to homology modelling software. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yannik Schälte, Fabian Fröhlich, Paul J. Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina A. Lakrisenko, Dantong Wang, Elba Raimúndez-Álvarez, Simon Merkt, Leonard Schmiester, Philipp Städter, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl, Jan Hasenauer |
pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ajay Anand Kumar, Bart Loeys, Gerarda Van De Beek, Nils Peeters, Wim Wuyts, Lut Van Laer, Geert Vandeweyer, Maaike Alaerts |
varAmpliCNV: analyzing variance of amplicons to detect CNVs in targeted NGS data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nick Strayer, Siwei Zhang, Lydia Yao, Tess Vessels, Cosmin Adrian Bejan, Ryan S. Hsi, Jana K. Shirey-Rice, Justin M. Balko, Douglas B. Johnson, Elizabeth J. Phillips, Alex Bick, Todd L. Edwards, Digna R. Velez Edwards, Jill M. Pulley, Quinn Stanton Wells, Michael R. Savona, Nancy J. Cox, Dan M. Roden, Douglas M. Ruderfer, Yaomin Xu |
Interactive network-based clustering and investigation of multimorbidity association matrices with associationSubgraphs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Gabriel Cretin, Charlotte Périn, Nicolas Zimmermann, Tatiana Galochkina, Jean-Christophe Gelly |
ICARUS: flexible protein structural alignment based on Protein Units. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Rachel Colquhoun, Ben Jackson, Áine Niamh O'toole, Andrew Rambaut |
SCORPIO: a utility for defining and classifying mutation constellations of virus genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zhongshen Li, Junru Jin, Yu Wang, Wentao Long, Yuanhao Ding, Haiyan Hu, Leyi Wei |
ExamPle: explainable deep learning framework for the prediction of plant small secreted peptides. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Zutan Li, Yuan Zhang, Jingya Fang, Zhihui Xu, Hao Zhang, Minfang Mao, Yuanyuan Chen, Liangyun Zhang, Cong Pian |
NcPath: a novel platform for visualization and enrichment analysis of human non-coding RNA and KEGG signaling pathways. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Elias Ulrich, Stefan M. Pfister, Natalie Jäger |
Revana: a comprehensive tool for regulatory variant analysis and visualization of cancer genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ludvig Larsson, Lovisa Franzén, Patrik L. Ståhl, Joakim Lundeberg |
Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Linda Grob, Anne Bertolini, Matteo Carrara, Ulrike Lischetti, Aizhan Tastanova, Christian Beisel, Mitchell P. Levesque, Daniel J. Stekhoven, Franziska Singer |
gExcite: a start-to-end framework for single-cell gene expression, hashing, and antibody analysis. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Omar G. Younis, Matteo Turchetta, Daniel Ariza Suarez, Steven Yates, Bruno Studer, Ioannis N. Athanasiadis, Andreas Krause, Joachim M. Buhmann, Luca Corinzia |
ChromaX: a fast and scalable breeding program simulator. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sophie Wharrie, Zhiyu Yang, Vishnu Raj, Remo Monti, Rahul Gupta, Ying Wang, Alicia Martin, Luke J. O'Connor, Samuel Kaski, Pekka Marttinen, Pier Francesco Palamara, Christoph Lippert, Andrea Ganna |
HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Mogan Gim, Junseok Choe, Seungheun Baek, Jueon Park, Chaeeun Lee, Minjae Ju, Sumin Lee, Jaewoo Kang |
ArkDTA: attention regularization guided by non-covalent interactions for explainable drug-target binding affinity prediction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Fatemeh Rafiei, Hojjat Zeraati, Karim Abbasi, Jahan B. Ghasemi, Mahboubeh Parsaeian, Ali Masoudi-Nejad |
DeepTraSynergy: drug combinations using multimodal deep learning with transformers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Richard A. Schäfer, Dominik Rabsch, Guillaume E. Scholz, Peter F. Stadler, Wolfgang R. Hess, Rolf Backofen, Jörg Fallmann, Björn Voß |
RNA interaction format: a general data format for RNA interactions. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Kwan-Ling Wu, Melisa A. Martinez-Paniagua, Kate Reichel, Prashant Menon, Shravani Deo, Badrinath Roysam, Navin Varadarajan |
Automated detection of apoptotic bodies and cells in label-free time-lapse high-throughput video microscopy using deep convolutional neural networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Bianca A. Buchner, Tom J. Clement, Daan H. de Groot, Jürgen Zanghellini |
ecmtool: fast and memory-efficient enumeration of elementary conversion modes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Dmitriy Umerenkov, Fedor Nikolaev, Tatiana I Shashkova, Pavel V. Strashnov, Maria Sindeeva, Andrey Shevtsov, Nikita V. Ivanisenko, Olga L. Kardymon |
PROSTATA: a framework for protein stability assessment using transformers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: GIL: a python package for designing custom indexing primers. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Vincent Wagner, Nicole Radde |
The impossible challenge of estimating non-existent moments of the Chemical Master Equation. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Björn Wallner |
AFsample: improving multimer prediction with AlphaFold using massive sampling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Jaesub Park, Sangyeon Lee, Kwansoo Kim, Jaegyun Jung, Doheon Lee |
Large-scale prediction of adverse drug reactions-related proteins with network embedding. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Yongxin Ji, Jiayu Shang, Xubo Tang, Yanni Sun |
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Benjamin B. Chu, Seyoon Ko, Jin J. Zhou, Aubrey Jensen, Hua Zhou 0001, Janet S. Sinsheimer, Kenneth Lange |
Multivariate genome-wide association analysis by iterative hard thresholding. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Mohan Rakesh, Hélène Vézina, Catherine Laprise, Ellen E. Freeman, Kelly M. Burkett, Marie-Hélène Roy-Gagnon |
GENLIB: new function to simulate haplotype transmission in large complex genealogies. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Thao Vu, Elizabeth Litkowski, Weixuan Liu, Katherine A. Pratte, Leslie Lange, Russell Bowler, Farnoush Banaei Kashani, Katerina J. Kechris |
NetSHy: network summarization via a hybrid approach leveraging topological properties. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Weiming He, Jian Yang, Yi Jing, Lian Xu, Kang Yu, Xiaodong Fang |
NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Liangrui Ren, Jun Wang, Zhao Li, Qingzhong Li, Guoxian Yu |
scMCs: a framework for single-cell multi-omics data integration and multiple clusterings. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Christopher A. Mancuso, Renming Liu, Arjun Krishnan |
PyGenePlexus: a Python package for gene discovery using network-based machine learning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | |
Correction to: "Retraction of: DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 functional and endogenous on-target editing efficiency". |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jiani Ma, Chen Li, Yiwen Zhang, Zhikang Wang, Shanshan Li, Yuming Guo, Lin Zhang 0015, Hui Liu, Xin Gao 0001, Jiangning Song |
MULGA, a unified multi-view graph autoencoder-based approach for identifying drug-protein interaction and drug repositioning. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Benjamin Hepp, Florence Lorieux, Augustin Degaugue, Jacques Oberto |
VAPEX: an interactive web server for the deep exploration of natural virus and phage genomes. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Andrea Vandelli, Magdalena Arnal Segura, Michele Monti, Jonathan Fiorentino, Laura Broglia, Alessio Colantoni, Natalia Sanchez de Groot, Marc Torrent Burgas, Alexandros Armaos, Gian Gaetano Tartaglia |
The PRALINE database: protein and Rna humAn singLe nucleotIde variaNts in condEnsates. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Vamsi Nallapareddy, Nicola Bordin, Ian Sillitoe, Michael Heinzinger, Maria Littmann, Vaishali P. Waman, Neeladri Sen, Burkhard Rost, Christine A. Orengo |
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hannah M. Doherty, George Kritikos, Marco Galardini, Manuel Banzhaf, Danesh Moradigaravand |
ChemGAPP: a tool for chemical genomics analysis and phenotypic profiling. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Sara Mohammad Taheri, Vartika Tewari, Rohan Kapre, Ehsan Rahiminasab, Karen Sachs, Charles Tapley Hoyt, Jeremy Zucker, Olga Vitek |
Optimal adjustment sets for causal query estimation in partially observed biomolecular networks. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Alessandro Vinceti, Lucia Trastulla, Umberto Perron, Andrea Raiconi, Francesco Iorio |
A heuristic algorithm solving the mutual-exclusivity-sorting problem. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Samantha Petti, Nicholas Bhattacharya, Roshan Rao, Justas Dauparas, Neil Thomas, Juannan Zhou, Alexander M. Rush, Peter Koo, Sergey Ovchinnikov |
End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ugo Bastolla, David Abia, Oscar Piette |
PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Bilal Shaker, Jingyu Lee, Yunhyeok Lee, Myeong-Sang Yu, Hyang-Mi Lee, Eunee Lee, Hoon-Chul Kang, Kwang-Seok Oh, Hyung Wook Kim, Dokyun Na |
A machine learning-based quantitative model (LogBB_Pred) to predict the blood-brain barrier permeability (logBB value) of drug compounds. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Quim Aguado-Puig, Max Doblas, Christos Matzoros, Antonio Espinosa, Juan Carlos Moure, Santiago Marco-Sola, Miquel Moretó |
WFA-GPU: gap-affine pairwise read-alignment using GPUs. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Chen Chen, Xiao Chen, Alex Morehead, Tianqi Wu, Jianlin Cheng |
3D-equivariant graph neural networks for protein model quality assessment. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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| 1 | Guangzhi Xiong, Stefan Bekiranov, Aidong Zhang |
ProtoCell4P: an explainable prototype-based neural network for patient classification using single-cell RNA-seq. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Weiyan Zhang, Chuang Chen, Jiacheng Wang, Jingping Liu, Tong Ruan |
A co-adaptive duality-aware framework for biomedical relation extraction. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Weihua Zheng, Wenwen Min, Shunfang Wang |
TsImpute: an accurate two-step imputation method for single-cell RNA-seq data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Thomas Binet, Bérangère Avalle, Miraine Dávila Felipe, Irene Maffucci |
AptaMat: a matrix-based algorithm to compare single-stranded oligonucleotides secondary structures. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Timo Lassmann |
SAMStat 2: quality control for next generation sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Hongjing Xie, Xuewei Cao, Shuanglin Zhang, Qiuying Sha |
Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies using multi-layer network. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Nima Nouri, Andre H. Kurlovs, Giorgio Gaglia, Emanuele de Rinaldis, Virginia Savova |
Scaling up single-cell RNA-seq data analysis with CellBridge workflow. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jose Espejo Valle-Inclán, Isidro Cortés-Ciriano |
ReConPlot: an R package for the visualization and interpretation of genomic rearrangements. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ambuj Kumar, Burak T. Kaynak, Karin S. Dorman, Pemra Doruker, Robert L. Jernigan |
Predicting allosteric pockets in protein biological assemblages. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Matthew D. Smith 0004, Marshall A Case, Emily K. Makowski, Peter M. Tessier |
Position-Specific Enrichment Ratio Matrix scores predict antibody variant properties from deep sequencing data. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Jonathan K. Vis, Mark A. Santcroos, Walter A. Kosters, Jeroen F. J. Laros |
A Boolean algebra for genetic variants. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Xuhua Yan, Ruiqing Zheng, Fang-Xiang Wu, Min Li 0007 |
CLAIRE: contrastive learning-based batch correction framework for better balance between batch mixing and preservation of cellular heterogeneity. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Ran Wang, Xubin Zheng, Fangda Song, Man Hon Wong 0001, Kwong-Sak Leung, Lixin Cheng |
Deciphering associations between gut microbiota and clinical factors using microbial modules. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
|
| 1 | Weijie Zhang, Yichu Shan, Lili Zhao, Zhen Liang, Chao Liu, Lihua Zhang, Yukui Zhang |
ComMap: a software to perform large-scale structure-based mapping for cross-linking mass spectrometry. |
Bioinform. |
2023 |
DBLP DOI BibTeX RDF |
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