Search results for "CSB"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Victor Olman, Dong Xu 0002, Ying Xu 0001	CUBIC: Identification of Regulatory Binding Sites Through Data Clustering.	CSB	2003	DBLP DOI BibTeX RDF
1	Fern Y. Hunt, Anthony J. Kearsley, Agnes O'Gallagher	A Linear Programming Based Algorithm for Multiple Sequence Alignments.	CSB	2003	DBLP DOI BibTeX RDF
1	Mark W. Duncan, Kim Fung, Heng Wang, Chia-Yu Yen, Krzysztof J. Cios	Identification of Contaminants in Proteomics Mass Spectrometry Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Gary Livingston, Xiao Li, Guangyi Li, Liwu Hao, Jianping Zhou	Using Rule Induction Methods to Analyze Gene Expression Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Jehoshua Bruck	Bridging Paradigm Gaps Between Biology and Engineering.	CSB	2003	DBLP DOI BibTeX RDF
1	Dong Hua, Dechang Chen, Xiuzhen Cheng 0001, Abdou Youssef	Latent Structure Models for the Analysis of Gene Expression Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Shuo Liu, Steve Lin, Mark Woon, Teri E. Klein, Russ B. Altman	A Personalized and Automated dbSNP Surveillance System.	CSB	2003	DBLP DOI BibTeX RDF
1	Ezekiel F. Adebiyi, Tinuke Dipe	Finding Higher Order Motifs under the Levenshtein Measure.	CSB	2003	DBLP DOI BibTeX RDF
1	Hwanjo Yu, Jiong Yang 0001, Wei Wang 0010, Jiawei Han 0001	Discovering Compact and Highly Discriminative Features or Feature Combinations of Drug Activities Using Support Vector Machines.	CSB	2003	DBLP DOI BibTeX RDF	Drug Activity, Support Vector Machine, Feature Selection
1	Marvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher	Stepping Up the Pace of Discovery: the Genomes to Life Program.	CSB	2003	DBLP DOI BibTeX RDF
1	James H. Graham, C. David Page Jr., Ahmed H. Kamal	Accelerating the Drug Design Process through Parallel Inductive Logic Programming Data Mining.	CSB	2003	DBLP DOI BibTeX RDF
1	Francis Y. L. Chin, Ngai Lam Ho, Tak Wah Lam, Prudence W. H. Wong, Mee Yee Chan	Efficient Constrained Multiple Sequence Alignment with Performance Guarantee.	CSB	2003	DBLP DOI BibTeX RDF
1	Xintao Wei, David N. Kuhn, Giri Narasimhan	Degenerate Primer Design via Clustering.	CSB	2003	DBLP DOI BibTeX RDF
1	Andres Figueroa, James Borneman, Tao Jiang 0001	Clustering Binary Fingerprint Vectors with Missing Values for DNA Array Data Analysis.	CSB	2003	DBLP DOI BibTeX RDF	oligonucleotide fingerprinting, DNA clone classification, DNA array, algorithm, cluster analysis
1	Kazuhiro Seki, Javed Mostafa	A Probabilistic Model for Identifying Protein Names and their Name Boundaries.	CSB	2003	DBLP DOI BibTeX RDF
1	Xin Lu, Wen Zhang, Zhaohui S. Qin, Jun S. Liu	Statistical Resynchronization and Detection of Periodic Transcripts.	CSB	2003	DBLP DOI BibTeX RDF
1	Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano	Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks.	CSB	2003	DBLP DOI BibTeX RDF
1	Chris H. Q. Ding, Hanchuan Peng	Minimum Redundancy Feature Selection from Microarray Gene Expression Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Tamer Kahveci, Ambuj K. Singh	Genome on Demand: Interactive Substring Searching.	CSB	2003	DBLP DOI BibTeX RDF
1	Chitta Baral, Karen Chancellor, Tran Hoai Nam, Nhan Tran	Representing and reasoning about signal networks: an illustration using NF\kappaB dependent signaling pathways.	CSB	2003	DBLP DOI BibTeX RDF
1	Richard M. Karp	The Role of Algorithmic Research in Computational Genomics.	CSB	2003	DBLP DOI BibTeX RDF
1	Matthew Palensky, Hesham H. Ali	A Genetic Algorithm for Simplifying The Amino Acid Alphabet.	CSB	2003	DBLP DOI BibTeX RDF
1	Suchendra M. Bhandarkar, Jinling Huang, Jonathan P. Arnold	A Parallel Genetic Algorithm for Physical Mapping of Chromosomes.	CSB	2003	DBLP DOI BibTeX RDF
1	Vojislav Stojkovic, Grace Steele, William Lupton	Using Easel for Modeling and Simulating the Interactions of Cells in Order to Better Understand the Basics of Biological Processes and to Predict Their Likely Behaviors.	CSB	2003	DBLP DOI BibTeX RDF
1	Harpreet Kaur Gill	Oncogenetics Tree Models - An Estimation.	CSB	2003	DBLP DOI BibTeX RDF
1	Cinzia Di Pietro, Valentina Di Pietro, Giovanni Emmanuele, Alfredo Ferro, T. Maugeri, E. Modica, Giuseppe Pigola, Alfredo Pulvirenti, Michele Purrello, Marco Ragusa, Marina Scalia, Dennis E. Shasha, Salvo Travali, V. Zimmitti	ANTICLUSTAL: Multiple Sequence Alignment by Antipole Clustering and Linear Approximate 1-Median Computation.	CSB	2003	DBLP DOI BibTeX RDF	Randomized Tournament, Clustering, Multiple Sequence Alignment
1	I-Jeng Wang, Christopher P. Diehl, Fernando J. Pineda	A Statistical Model of Proteolytic Digestion.	CSB	2003	DBLP DOI BibTeX RDF
1	Kuen-Pin Wu, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian Hsu	A New Similarity Measure among Protein Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Li Zhang 0008, Aidong Zhang, Murali Ramanathan	Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression Data.	CSB	2003	DBLP DOI BibTeX RDF	Fourier harmonic projection, visualization, time series, gene expression
1	Krishna Gopalakrishnan, Kayvan Najarian	Prediction of Protein Function Using Signal Processing of Biochemical Properties.	CSB	2003	DBLP DOI BibTeX RDF
1	Hirotoshi Taira, Tomonori Izumitani, Eisaku Maeda, Takeshi Suzuki	A New Method for Predicting RNA Secondary Structure.	CSB	2003	DBLP DOI BibTeX RDF
1	Tema Fridman, Robert M. Day, Jane Razumovsbya, Dong Xu, Andrey Gorin	Probability Profiles - Novel Approach in Tandem Mass Spectrometry De Novo Sequencing.	CSB	2003	DBLP DOI BibTeX RDF
1	Alexander Schliep, David C. Torney, Sven Rahmann	Group Testing With DNA Chips: Generating Designs and Decoding Experiments.	CSB	2003	DBLP DOI BibTeX RDF
1	Adam P. Arkin	Motifs and Modules in Cellular Signal Processing: Applications to Microbial Stress Response Pathways.	CSB	2003	DBLP DOI BibTeX RDF
1	Donald A. Adjeroh, Jianan Feng	The SCP and Compressed Domain Analysis of Biological Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Richard J. Carter	Riptide: Fast Protein Identification from Mass Spectrometer Data.	CSB	2003	DBLP DOI BibTeX RDF
1	Jianhua Ruan, Gary D. Stormo, Weixiong Zhang	An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru.	CSB	2003	DBLP DOI BibTeX RDF
1	Eugene Santos Jr., Keum Joo Kim, Eunice E. Santos	Local Minima-Based Exploration for Off-Lattice Protein Folding.	CSB	2003	DBLP DOI BibTeX RDF
1	Mihaela Zavolan, Nicholas D. Socci, Nikolaus Rajewsky, Terry Gaasterland	SMASHing regulatory sites in DNA by human.	CSB	2003	DBLP DOI BibTeX RDF
1	Eric G. Stephan, George Chin Jr., Kyle R. Klicker, Abigail L. Corrigan, Heidi J. Sofia	A Symbolic Logic Strategy For Mapping Biological Concepts in the HERBE Prototype.	CSB	2003	DBLP DOI BibTeX RDF
1	Jake Yue Chen, Andrey Y. Sivachenko, Russell Bell, Cornelia Kurschner, Irene Ota, Sudhir Sahasrabudhe	Initial Large-scale Exploration of Protein-protein Interactions in Human Brain.	CSB	2003	DBLP DOI BibTeX RDF
1	Wenwu Cui, Jianchang Ning, Ulhas P. Naik, Melinda K. Duncan	OptiRNai, a Web-based Program to Select siRNA Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Peter D. Karp	Pathway Bioinformatics.	CSB	2003	DBLP DOI BibTeX RDF
1	Dan Gusfield, Satish Eddhu, Charles H. Langley	Efficient Reconstruction of Phylogenetic Networks with Constrained Recombination.	CSB	2003	DBLP DOI BibTeX RDF
1	Tomoyuki Yamada, Shinichi Morishita	Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently.	CSB	2003	DBLP DOI BibTeX RDF
1	Robert L. Grossman, Pavan Kasturi, Donald Hamelberg, Bing Liu 0001	Experimental Studies of the Universal Chemical Key (UCK)Algorithm on the NCI Database of Chemical Compounds.	CSB	2003	DBLP DOI BibTeX RDF
1	Carolyn L. Talcott, Steven Eker, Merrill Knapp, Patrick Lincoln, Keith Laderoute	Pathway Logic Modeling of Protein Functional Domains in Signal Transduction.	CSB	2003	DBLP DOI BibTeX RDF
1	Edward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier	Computing for the DOE Genomes to Life Program.	CSB	2003	DBLP DOI BibTeX RDF
1	Alexandre Tchourbanov, Daniel Quest, Hesham H. Ali, Mark A. Pauley, Robert B. Norgren	A New Approach for Gene Annotation Using Unambiguous Sequence Joining.	CSB	2003	DBLP DOI BibTeX RDF	Spliced alignments, RefSeq, dynamic programming, BLAST
1	Simone Bentolila	Two operative concepts for the post-genomic era: the "me'moire vive" of the cell and a molecular algebra.	CSB	2003	DBLP DOI BibTeX RDF
1	Stephen T. C. Wong	Integrating Bioinformatics Advances into Disease Management Systems to Improve Quality of Care.	CSB	2003	DBLP DOI BibTeX RDF
1	Liaofu Luo, Li-Ching Hsieh, Fengmin Ji, Mengwen Jia, H. C. Lee	Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA Sequences.	CSB	2003	DBLP DOI BibTeX RDF
1	Hong Sun, Ozgur Ozturk, Hakan Ferhatosmanoglu	CoMRI: A Compressed Multi-Resolution Index Structure for Sequence Similarity Queries.	CSB	2003	DBLP DOI BibTeX RDF
1	Jane Fridlyand, Antoine Snijders, Dan Pinkel, Donna Albertson, Ajay N. Jain	Statistical issues in the analysis of the array CGH data.	CSB	2003	DBLP DOI BibTeX RDF
1	Cun-Quan Zhang, Yunkai Liu, Elaine M. Eschen, Keqiang Wu	Identifying Regulatory Signals in DNA-Sequences with a Non-statistical Approximation Approach.	CSB	2003	DBLP DOI BibTeX RDF
1	Tolga Can, Yuan-Fang Wang	CTSS: A Robust and Efficient Method for Protein Structure Alignment Based on Local Geometrical and Biological Feature.	CSB	2003	DBLP DOI BibTeX RDF
1	Weijian Xuan, Stanley J. Watson, Huda Akil, Fan Meng	Identifying Gene and Protein Names from Biological Texts.	CSB	2003	DBLP DOI BibTeX RDF
1	Jianping Zhou, Gary Livingston, Georges G. Grinstein	Automatic Parameter Selection for Sequence Similarity Search.	CSB	2003	DBLP DOI BibTeX RDF
1	Danny Barash	Spectral Decomposition of the Laplacian Matrix Applied to RNA Folding Prediction.	CSB	2003	DBLP DOI BibTeX RDF
1	Chen Yang, Sami Khuri	PTC: An Interactive Tool for Phylogenetic Tree Construction.	CSB	2003	DBLP DOI BibTeX RDF
1	Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta	A Semantic Mediation Approach for Problems in Computational Molecular Biology.	CSB	2003	DBLP DOI BibTeX RDF
1	Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen 0006, Fengzhu Sun	Prediction of Protein Function Using Protein-Protein Interaction Data.	CSB	2002	DBLP DOI BibTeX RDF
1	Christopher James Langmead, C. Robertson McClung, Bruce Randall Donald	A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns.	CSB	2002	DBLP DOI BibTeX RDF
1	Suchendra M. Bhandarkar, Jonathan P. Arnold	Parallel Monte Carlo Methods for Physical Mapping of Chromosones.	CSB	2002	DBLP DOI BibTeX RDF
1	Jiong Yang 0001, Wei Wang 0010	Towards Automatic Clustering of Protein Sequences.	CSB	2002	DBLP DOI BibTeX RDF
1	Mashilamani Sambasivam	Selective Tree Growing: A Deterministic Constant-Space Linear-Time Algorithm for Pattern Discovery and for Computing Multiple Sequence Alignment.	CSB	2002	DBLP DOI BibTeX RDF
1	Ryan T. Koehler, Nicolas Peyret	Distributions of Free Energy, Melting Temperature, and Hybridization Propensity for Genomic DNA Oligomers.	CSB	2002	DBLP DOI BibTeX RDF
1	Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano	Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network.	CSB	2002	DBLP DOI BibTeX RDF
1	Shahid H. Bokhari, Matthew A. Glaser, Harry F. Jordan, Yves Lansac, Jon R. Sauer, Bart Van Zeghbroeck	Parallelizing a DNA Simulation Code for the Cray MTA-2.	CSB	2002	DBLP DOI BibTeX RDF
1	Lada A. Adamic, Dennis M. Wilkinson, Bernardo A. Huberman, Eytan Adar	A Literature Based Method for Identifying Gene-Disease Connections.	CSB	2002	DBLP DOI BibTeX RDF
1	Daisuke Ogino, Shiro Mori, Masato Nose, Hideki Sawada	Complexity and Application of Pedigree Analysis Programme GTree.	CSB	2002	DBLP DOI BibTeX RDF	Pedigree analysis, rheumatoid arthritis, McRA1 mouse, GTree
1	Guo-Hui Lin, Dong Xu 0002, Zhi-Zhong Chen, Tao Jiang 0001, Jianjun Wen, Ying Xu 0001	An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks.	CSB	2002	DBLP DOI BibTeX RDF	chemical shift, peak assignment, combinatorial technique, branch-and-bound, greedy algorithm, protein structure, bipartite matching, NMR
1	Michael Brudno, Burkhard Morgenstern	Fast and Sensitive Alignment of Large Genomic Sequences.	CSB	2002	DBLP DOI BibTeX RDF
1	Sven Rahmann	Rapid Large-Scale Oligonucleotide Selection for Microarrays.	CSB	2002	DBLP DOI BibTeX RDF
1	Huimin Xie, Bailin Hao	Visualization of K -Tuple Distribution in Procaryote Complete Genomes and Their Randomized Counterparts.	CSB	2002	DBLP DOI BibTeX RDF
1	Tetsuya Kobayashi, Luonan Chen, Kazuyuki Aihara	Design of Genetic Switches with Only Positive Feedback Loops.	CSB	2002	DBLP DOI BibTeX RDF	monotone dynamical system, stability, delay, switch, genetic network
1	Mathew J. Palakal, Matthew J. Stephens, Snehasis Mukhopadhyay, Rajeev R. Raje, Simon Rhodes	A Multi-Level Text Mining Method to Extract Biological Relationships.	CSB	2002	DBLP DOI BibTeX RDF
1	Luonan Chen, Tetsuya Kobayashi, Kazuyuki Aihara	Designing Oscillators in Synthetic Gene Networks Based on Multi-Scale Dynamics.	CSB	2002	DBLP DOI BibTeX RDF
1	Conrad Shyu, James A. Foster, Larry J. Forney	Electronic Polymerase Chain Reaction (EPCR) Search Algorithm.	CSB	2002	DBLP DOI BibTeX RDF
1	Yujing Zeng, Jianshan Tang, Javier Garcia-Frías, Guang R. Gao	An Adaptive Meta-Clustering Approach: Combining the Information from Different Clustering Results.	CSB	2002	DBLP DOI BibTeX RDF
1	Ann E. Loraine, Gregg A. Helt	Visualization Techniques for Genomic Data.	CSB	2002	DBLP DOI BibTeX RDF
1	Enrico Pontelli, Desh Ranjan, Brook Milligan, Gopal Gupta 0001	F-LOG: A Domain Specific Language for Solving Phylogenetic Inference Problems.	CSB	2002	DBLP DOI BibTeX RDF
1	Rishi Khan, Yujing Zeng, Javier Garcia-Frías, Guang R. Gao	A Bayesian Modeling Framework for Genetic Regulation.	CSB	2002	DBLP DOI BibTeX RDF
1	Jia Li 0001, Hongyuan Zha	Simultaneous Classification and Feature Clustering Using Discriminant Vector Quantization with Applications to Microarray Data Analysis.	CSB	2002	DBLP DOI BibTeX RDF
1	Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou	Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family Alignment.	CSB	2002	DBLP DOI BibTeX RDF
1	Alessandro Vullo, Paolo Frasconi	A Bi-Recursive Neural Network Architecture for the Prediction of Protein Coarse Contact Maps.	CSB	2002	DBLP DOI BibTeX RDF	Protein contact maps, machine learning, recursive neural networks
1	Conrad Shyu, James A. Foster, K. X. Liao, S. J. Bent, K. Sale, Larry J. Forney, Terence Soule	MiCA: Web-Based Computational Tools for the Analysis of Microbial Community Structure and Compisition Based on T-RFLP of 16S rRNA Gene.	CSB	2002	DBLP DOI BibTeX RDF
1	Yumi Kawazoe, Toshikazu Shiba, Masahito Yamamoto, Azuma Ohuchi	A Security System for Personal Genome Information at DNA Level.	CSB	2002	DBLP DOI BibTeX RDF
1	Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose	Protein-Based Analysis of Alternative Splicing in the Human Genome.	CSB	2002	DBLP DOI BibTeX RDF
1	Donald A. Adjeroh, Yong Zhang 0050, Amar Mukherjee, Matt Powell, Tim Bell 0001	DNA Sequence Compression Using the Burrows-Wheeler Transform.	CSB	2002	DBLP DOI BibTeX RDF	DNA sequence compression, repetition structures, Burrows-Wheeler Transform, BWT
1	Shoko Miyake, Yukako Tohsato, Hideo Matsuda	An Application of a Pathway Alignment Method to Comparative Analysis between Genome and Pathways.	CSB	2002	DBLP DOI BibTeX RDF
1	Steven E. Brenner	Genome Annotation and Protein Structure.	CSB	2002	DBLP DOI BibTeX RDF
1	Michele Markstein, Angela Stathopoulos, Vicky Markstein, Peter W. Markstein, Naoe Harafuji, Dave Keys, Byung-in Lee, Paul Richardson, Dan Rokshar, Mike Levine	Decoding Noncoding Regulatory DNAs in Metazoan Genomes.	CSB	2002	DBLP DOI BibTeX RDF
1	Lorie Dudoignon, Eric Glémet, Hendrik Cornelis Heus, Mathieu Raffinot	High Similarity Sequence Comparison in Clustering Large Sequence Databases.	CSB	2002	DBLP DOI BibTeX RDF
1		1st IEEE Computer Society Bioinformatics Conference, CSB 2002, Stanford, CA, USA, August 14-16, 2002	CSB	2002	DBLP BibTeX RDF
1	Dianjing Guo, Xingjing Li, Aejaaz Kamal, Olga Brazhnik, Pedro Mendes 0001	A Reference Database for Medicago Truncatula Genes, Protiens, and Metabolites.	CSB	2002	DBLP DOI BibTeX RDF
1	Louxin Zhang, Song Zhu	A New Clustering Method for Microarray Data Analysis.	CSB	2002	DBLP DOI BibTeX RDF
1	Jun Ogasawara, Shinichi Morishita	Fast and Sensitive Algorithm for Aligning ESTs to Human Genome.	CSB	2002	DBLP DOI BibTeX RDF
1	Shigeto Seno, Reiji Teramoto, Hideo Matsuda	P-quasi Complete Linkage Analysis for Gene-Expression Data.	CSB	2002	DBLP DOI BibTeX RDF
1	Haixun Wang, Chang-Shing Perng, Wei Fan 0001, Philip S. Yu	An Index Structure for Pattern Similarity Searching in DNA Microarray Dat.	CSB	2002	DBLP DOI BibTeX RDF

Publications at "CSB"( http://dblp.L3S.de/Venues/CSB )