Hits ?▲ |
Authors |
Title |
Venue |
Year |
Link |
Author keywords |
43 | Ahmed Shalaby 0005, Chris Thachuk, Damien Woods |
Minimum Free Energy, Partition Function and Kinetics Simulation Algorithms for a Multistranded Scaffolded DNA Computer. |
DNA |
2023 |
DBLP DOI BibTeX RDF |
|
43 | Bowen Li 0005, Neil Mackenzie, Ben Shirt-Ediss, Natalio Krasnogor, Paolo Zuliani |
Modelling and Optimisation of a DNA Stack Nano-Device Using Probabilistic Model Checking. |
DNA |
2022 |
DBLP DOI BibTeX RDF |
|
43 | Hope Amber Johnson, Anne Condon |
A Coupled Reconfiguration Mechanism for Single-Stranded DNA Strand Displacement Systems. |
DNA |
2022 |
DBLP DOI BibTeX RDF |
|
43 | Nicolas Levy, Nicolas Schabanel |
ENSnano: A 3D Modeling Software for DNA Nanostructures. |
DNA |
2021 |
DBLP DOI BibTeX RDF |
|
43 | Tonglin Chen, Arnav Solanki, Marc D. Riedel |
Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting, and Searching. |
DNA |
2021 |
DBLP DOI BibTeX RDF |
|
43 | David Doty, Benjamin L. Lee, Tristan Stérin |
scadnano: A Browser-Based, Scriptable Tool for Designing DNA Nanostructures. |
DNA |
2020 |
DBLP DOI BibTeX RDF |
|
43 | Robert F. Johnson, Lulu Qian |
Simplifying Chemical Reaction Network Implementations with Two-Stranded DNA Building Blocks. |
DNA |
2020 |
DBLP DOI BibTeX RDF |
|
43 | Sedigheh Zolaktaf, Frits Dannenberg, Erik Winfree, Alexandre Bouchard-Côté, Mark Schmidt 0001, Anne Condon |
Efficient Parameter Estimation for DNA Kinetics Modeled as Continuous-Time Markov Chains. |
DNA |
2019 |
DBLP DOI BibTeX RDF |
|
43 | Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze |
A Content-Addressable DNA Database with Learned Sequence Encodings. |
DNA |
2018 |
DBLP DOI BibTeX RDF |
|
43 | Constantine G. Evans, Erik Winfree |
Optimizing Tile Set Size While Preserving Proofreading with a DNA Self-assembly Compiler. |
DNA |
2018 |
DBLP DOI BibTeX RDF |
|
43 | Shalin Shah, John H. Reif |
Temporal DNA Barcodes: A Time-Based Approach for Single-Molecule Imaging. |
DNA |
2018 |
DBLP DOI BibTeX RDF |
|
43 | Bjarke N. Hansen, Kim S. Larsen, Daniel Merkle, Alexei Mihalchuk |
DNA-Templated Synthesis Optimization. |
DNA |
2017 |
DBLP DOI BibTeX RDF |
|
43 | Matthew R. Lakin, Andrew Phillips |
Automated, Constraint-Based Analysis of Tethered DNA Nanostructures. |
DNA |
2017 |
DBLP DOI BibTeX RDF |
|
43 | Sherry Xi Chen, Georg Seelig |
A DNA Neural Network Constructed from Molecular Variable Gain Amplifiers. |
DNA |
2017 |
DBLP DOI BibTeX RDF |
|
43 | Sedigheh Zolaktaf, Frits Dannenberg, Xander Rudelis, Anne Condon, Joseph M. Schaeffer, Mark Schmidt 0001, Chris Thachuk, Erik Winfree |
Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates. |
DNA |
2017 |
DBLP DOI BibTeX RDF |
|
43 | Vahid Mardanlou, Leopold N. Green, Hari K. K. Subramanian, Rizal F. Hariadi, Jongmin Kim 0001, Elisa Franco |
A Coarse-Grained Model of DNA Nanotube Population Growth. |
DNA |
2016 |
DBLP DOI BibTeX RDF |
|
43 | Chris Thachuk, Erik Winfree, David Soloveichik |
Leakless DNA Strand Displacement Systems. |
DNA |
2015 |
DBLP DOI BibTeX RDF |
|
43 | Michael A. Boemo, Andrew J. Turberfield, Luca Cardelli |
Automated Design and Verification of Localized DNA Computation Circuits. |
DNA |
2015 |
DBLP DOI BibTeX RDF |
|
43 | Matthew R. Lakin, Darko Stefanovic |
Supervised Learning in an Adaptive DNA Strand Displacement Circuit. |
DNA |
2015 |
DBLP DOI BibTeX RDF |
|
43 | Matthew R. Lakin, Rasmus L. Petersen, Kathryn E. Gray, Andrew Phillips |
Abstract Modelling of Tethered DNA Circuits. |
DNA |
2014 |
DBLP DOI BibTeX RDF |
|
43 | Neil Dalchau, Georg Seelig, Andrew Phillips |
Computational Design of Reaction-Diffusion Patterns Using DNA-Based Chemical Reaction Networks. |
DNA |
2014 |
DBLP DOI BibTeX RDF |
|
43 | Lulu Qian, Erik Winfree |
Parallel and Scalable Computation and Spatial Dynamics with DNA-Based Chemical Reaction Networks on a Surface. |
DNA |
2014 |
DBLP DOI BibTeX RDF |
|
43 | Boyan Yordanov, Christoph M. Wintersteiger, Youssef Hamadi, Andrew Phillips, Hillel Kugler |
Functional Analysis of Large-Scale DNA Strand Displacement Circuits. |
DNA |
2013 |
DBLP DOI BibTeX RDF |
|
43 | Constantine G. Evans, Erik Winfree |
DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly. |
DNA |
2013 |
DBLP DOI BibTeX RDF |
|
43 | Matthew R. Lakin, Andrew Phillips, Darko Stefanovic |
Modular Verification of DNA Strand Displacement Networks via Serializability Analysis. |
DNA |
2013 |
DBLP DOI BibTeX RDF |
|
43 | Frits Dannenberg, Marta Z. Kwiatkowska, Chris Thachuk, Andrew J. Turberfield |
DNA Walker Circuits: Computational Potential, Design, and Verification. |
DNA |
2013 |
DBLP DOI BibTeX RDF |
|
43 | Mark G. Arnold |
Extending DNA-Sticker Arithmetic to Arbitrary Size Using Staples. |
DNA |
2013 |
DBLP DOI BibTeX RDF |
|
43 | Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón |
Probabilistic Reasoning with an Enzyme-Driven DNA Device. |
DNA |
2013 |
DBLP DOI BibTeX RDF |
|
43 | Alireza Goudarzi, Matthew R. Lakin, Darko Stefanovic |
DNA Reservoir Computing: A Novel Molecular Computing Approach. |
DNA |
2013 |
DBLP DOI BibTeX RDF |
|
43 | Anton Kan, Ko-ichiroh Shohda, Akira Suyama |
A DNA Based Molecular Logic Gate Capable of a Variety of Logical Operations. |
DNA |
2012 |
DBLP DOI BibTeX RDF |
|
43 | Eugen Czeizler, Alexandru Popa 0001 |
Synthesizing Minimal Tile Sets for Complex Patterns in the Framework of Patterned DNA Self-Assembly. |
DNA |
2012 |
DBLP DOI BibTeX RDF |
|
43 | Chris Thachuk, Anne Condon |
Space and Energy Efficient Computation with DNA Strand Displacement Systems. |
DNA |
2012 |
DBLP DOI BibTeX RDF |
|
43 | Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón |
Probabilistic Reasoning with a Bayesian DNA Device Based on Strand Displacement. |
DNA |
2012 |
DBLP DOI BibTeX RDF |
|
43 | Carsten Svaneborg, Harold Fellermann, Steen Rasmussen |
DNA Self-Assembly and Computation Studied with a Coarse-Grained Dynamic Bonded Model. |
DNA |
2012 |
DBLP DOI BibTeX RDF |
|
43 | Max H. Garzon, Kiran C. Bobba |
A Geometric Approach to Gibbs Energy Landscapes and Optimal DNA Codeword Design. |
DNA |
2012 |
DBLP DOI BibTeX RDF |
|
43 | Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche |
Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes. |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
43 | Sunaina Surana, Souvik Modi, Yamuna Krishnan |
An Autonomous DNA Nanodevice Captures pH Maps of Living Cells in Culture and in Vivo. |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
43 | Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík |
Autonomous Resolution Based on DNA Strand Displacement. |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
43 | Hao Yan |
Designer DNA Architectures for Bionanotechnology. |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
43 | Stavros Konstantinidis, Nicolae Santean |
Computing Maximal Kleene Closures That Are Embeddable in a Given Constrained DNA Language. |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
43 | Tuomo Lempiäinen, Eugen Czeizler, Pekka Orponen |
Synthesizing Small and Reliable Tile Sets for Patterned DNA Self-assembly. |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
43 | Mark G. Arnold |
An Improved DNA-Sticker Addition Algorithm and Its Application to Logarithmic Arithmetic. |
DNA |
2011 |
DBLP DOI BibTeX RDF |
|
43 | Mika Göös, Pekka Orponen |
Synthesizing Minimal Tile Sets for Patterned DNA Self-assembly. |
DNA |
2010 |
DBLP DOI BibTeX RDF |
|
43 | Elton Graugnard, Amber Cox, Jeunghoon Lee, Cheryl Jorcyk, Bernard Yurke, William L. Hughes |
Operation of a DNA-Based Autocatalytic Network in Serum. |
DNA |
2010 |
DBLP DOI BibTeX RDF |
|
43 | David Yu Zhang, Georg Seelig |
DNA-Based Fixed Gain Amplifiers and Linear Classifier Circuits. |
DNA |
2010 |
DBLP DOI BibTeX RDF |
|
43 | David Yu Zhang |
Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions. |
DNA |
2010 |
DBLP DOI BibTeX RDF |
|
43 | Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki |
Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement. |
DNA |
2010 |
DBLP DOI BibTeX RDF |
|
43 | Ho-Lin Chen, Ming-Yang Kao |
Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems. |
DNA |
2010 |
DBLP DOI BibTeX RDF |
|
43 | Lulu Qian, David Soloveichik, Erik Winfree |
Efficient Turing-Universal Computation with DNA Polymers. |
DNA |
2010 |
DBLP DOI BibTeX RDF |
|
43 | Mark Daley, Ian McQuillan |
On Computational Properties of Template-Guided DNA Recombination. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
43 | Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi |
Specificity of Hybridization Between DNA Sequences Based on Free Energy. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
43 | Natasa Jonoska, Kalpana Mahalingam |
Languages of DNA Based Code Words. |
DNA |
2003 |
DBLP DOI BibTeX RDF |
|
43 | Ashish Goel, Friedrich C. Simmel, Petr Sosík (eds.) |
DNA Computing, 14th International Meeting on DNA Computing, DNA 14, Prague, Czech Republic, June 2-9, 2008. Revised Selected Papers |
DNA |
2009 |
DBLP DOI BibTeX RDF |
|
43 | Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón |
Sequentiality Induced by Spike Number in SNP Systems. |
DNA |
2008 |
DBLP DOI BibTeX RDF |
|
43 | Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai |
Robust Self-assembly of Graphs. |
DNA |
2008 |
DBLP DOI BibTeX RDF |
|
43 | Yuriy Brun, Dustin Reishus |
Connecting the Dots: Molecular Machinery for Distributed Robotics. |
DNA |
2008 |
DBLP DOI BibTeX RDF |
|
43 | Matthew J. Patitz, Scott M. Summers |
Self-assembly of Discrete Self-similar Fractals. |
DNA |
2008 |
DBLP DOI BibTeX RDF |
|
43 | Claudio Ferretti, Giancarlo Mauri, Claudio Zandron (eds.) |
DNA Computing, 10th International Workshop on DNA Computing, DNA 10, Milan, Italy, June 7-10, 2004, Revised Selected Papers |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
43 | David Soloveichik, Erik Winfree |
Complexity of Self-assembled Shapes. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Tero Harju, Maurice Margenstern |
Splicing Systems for Universal Turing Machines. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Artiom Alhazov, Matteo Cavaliere |
Computing by Observing Bio-systems: The Case of Sticker Systems. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Clint Morgan, Darko Stefanovic, Cristopher Moore, Milan N. Stojanovic |
Building the Components for a Biomolecular Computer. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Maurice Margenstern, Victor Mitrana, Mario J. Pérez-Jiménez |
Accepting Hybrid Networks of Evolutionary Processors. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Erzsébet Csuhaj-Varjú, Oscar H. Ibarra, György Vaszil |
On the Computational Complexity of P Automata. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Gheorghe Paun |
From Cells to Computers: Membrane Computing - A Quick Overview. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Cezar Câmpeanu, Andrei Paun |
Computing Beyond the Turing Limit Using the H Systems. |
DNA |
2004 |
DBLP DOI BibTeX RDF |
|
43 | Anne Condon, Grzegorz Rozenberg (eds.) |
DNA Computing, 6th International Workshop on DNA-Based Computers, DNA 2000, Leiden, The Netherlands, June 13-17, 2000, Revised Papers |
DNA |
2001 |
DBLP DOI BibTeX RDF |
|
42 | Lila Kari, Kalpana Mahalingam, Gabriel Thierrin |
The syntactic monoid of hairpin-free languages. |
Acta Informatica |
2007 |
DBLP DOI BibTeX RDF |
|
42 | Lila Kari |
Nanocomputing by Self-assembly. |
UC |
2007 |
DBLP DOI BibTeX RDF |
|
42 | Mital Kakaiya, Sushant Goel, Hema Sharda, David Taniar |
Improving Web Server Performance by Distributing Web Applications. |
IICS |
2003 |
DBLP DOI BibTeX RDF |
|
42 | Yusuke Nakamura |
Human genome analysis and medicine in the 21st century (abstract only). |
RECOMB |
2000 |
DBLP DOI BibTeX RDF |
|
42 | Allen P. Mills Jr., Bernard Yurke, Philip M. Platzman |
DNA analog vector algebra and physical constraints on large-scale DNA-based neural network computation. |
DNA Based Computers |
1999 |
DBLP DOI BibTeX RDF |
|
42 | Takashi Yokomori, Satoshi Kobayashi |
DNA-EC: A model of DNA-computing based on equality checking. |
DNA Based Computers |
1997 |
DBLP DOI BibTeX RDF |
|
42 | Masami Hagiya |
From Molecular Computing to Molecular Programming. |
DNA Computing |
2000 |
DBLP DOI BibTeX RDF |
|
42 | Maurice Margenstern, Yurii Rogozhin |
About Time-Varying Distributed H Systems. |
DNA Computing |
2000 |
DBLP DOI BibTeX RDF |
|
42 | Rudolf Freund, Franziska Freund |
Molecular Computing with Generalized Homogeneous P-Systems. |
DNA Computing |
2000 |
DBLP DOI BibTeX RDF |
|
42 | Pierluigi Frisco |
Diophantine Equations and Splicing: A New Demonstration of the Generative Capability of H Systems. |
DNA Computing |
2000 |
DBLP DOI BibTeX RDF |
|
42 | Ron Weiss, Thomas F. Knight Jr. |
Engineered Communications for Microbial Robotics. |
DNA Computing |
2000 |
DBLP DOI BibTeX RDF |
|
42 | Cheng-Chang Jeng, I-Ching Yang, Kun-Lin Hsieh, Chun-Nan Lin |
Clustering Analysis for Bacillus Genus Using Fourier Transform and Self-Organizing Map. |
ICONIP (3) |
2006 |
DBLP DOI BibTeX RDF |
Bacillus, Self-organizing map, Fourier transform, DNA sequence |
41 | Lila Kari, Rob Kitto, Greg Gloor |
A computer scientist's guide to molecular biology. |
Soft Comput. |
2001 |
DBLP DOI BibTeX RDF |
In vivo DNA, In vitro DNA computing, Bio-operations |
41 | Rafael Navajas-Pérez, Manuel Ruiz Rejón, Manuel A. Garrido-Ramos, José Luis Aznarte, Cristina Rubio-Escudero |
satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae). |
BIRD |
2007 |
DBLP DOI BibTeX RDF |
|
40 | Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon |
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots. |
DNA |
2009 |
DBLP DOI BibTeX RDF |
|
40 | Ashish Goel, Pablo Moisset de Espanés |
Toward Minimum Size Self-Assembled Counters. |
DNA |
2007 |
DBLP DOI BibTeX RDF |
|
40 | Benedek Nagy |
On 5' --> 3' Sensing Watson-Crick Finite Automata. |
DNA |
2007 |
DBLP DOI BibTeX RDF |
|
40 | Erzsébet Csuhaj-Varjú, Sergey Verlan |
Length-Separating Test Tube Systems. |
DNA |
2006 |
DBLP DOI BibTeX RDF |
|
40 | Petr Sosík, Alfonso Rodríguez-Patón |
P Systems with Active Membranes Characterize PSPACE. |
DNA |
2006 |
DBLP DOI BibTeX RDF |
|
40 | Lucian Ilie, Roberto Solis-Oba |
Gene Assembly Algorithms for Ciliates. |
DNA |
2006 |
DBLP DOI BibTeX RDF |
stichotrichs, gene assembly, dlad-first greedy strategy, algorithm, ciliates |
40 | Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boonsit Yimwadsana |
On Times to Compute Shapes in 2D Tile Self-assembly. |
DNA |
2006 |
DBLP DOI BibTeX RDF |
|
40 | Thomas Keef |
A Mathematical Approach to Cross-Linked Structures in Viral Capsids: Predicting the Architecture of Novel Containers for Drug Delivery. |
DNA |
2006 |
DBLP DOI BibTeX RDF |
|
40 | Sudheer Sahu, Peng Yin 0003, John H. Reif |
A Self-assembly Model of Time-Dependent Glue Strength. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
40 | Bei Wang 0001, Dimitris Papamichail, Steffen Mueller, Steven Skiena |
Two Proteins for the Price of One: The Design of Maximally Compressed Coding Sequences. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
40 | Atsushi Kijima, Satoshi Kobayashi |
Efficient Algorithm for Testing Structure Freeness of Finite Set of Biomolecular Sequences. |
DNA |
2005 |
DBLP DOI BibTeX RDF |
|
40 | In-Hee Lee, Ji-Yoon Park, Young-Gyu Chai, Byoung-Tak Zhang |
RCA-Based Detection Methods for Resolution Refutation. |
DNA |
2003 |
DBLP DOI BibTeX RDF |
|
40 | Jian-Qin Liu, Katsunori Shimohara |
Biomolecular Computing by Encoding of Regulated Phosphorylation-Dephosphorylation and Logic of Kinase-Phosphatase in Cells. |
DNA |
2003 |
DBLP DOI BibTeX RDF |
|
40 | Matthew Cook 0001, Paul W. K. Rothemund, Erik Winfree |
Self-Assembled Circuit Patterns. |
DNA |
2003 |
DBLP DOI BibTeX RDF |
|
40 | Erik Winfree, Renat Bekbolatov |
Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly. |
DNA |
2003 |
DBLP DOI BibTeX RDF |
|
40 | Daisuke Matsuda, Masayuki Yamamura |
Cascading Whiplash PCR with a Nicking Enzyme. |
DNA |
2002 |
DBLP DOI BibTeX RDF |
|
40 | Subhayu Basu, David K. Karig, Ron Weiss |
Engineering Signal Processing in Cells: Towards Molecular Concentration Band Detection. |
DNA |
2002 |
DBLP DOI BibTeX RDF |
|
40 | Russell J. Deaton, Junghuei Chen, Hong Bi, Max H. Garzon, Harvey Rubin, David Harlan Wood |
A PCR-based Protocol for In Vitro Selection of Non-crosshybridizing Oligonucleotides. |
DNA |
2002 |
DBLP DOI BibTeX RDF |
|
40 | Akihiro Takahara, Takashi Yokomori |
On the Computational Power of Insertion-Deletion Systems. |
DNA |
2002 |
DBLP DOI BibTeX RDF |
|