Search results for "DNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
43	Ahmed Shalaby 0005, Chris Thachuk, Damien Woods	Minimum Free Energy, Partition Function and Kinetics Simulation Algorithms for a Multistranded Scaffolded DNA Computer.	DNA	2023	DBLP DOI BibTeX RDF
43	Bowen Li 0005, Neil Mackenzie, Ben Shirt-Ediss, Natalio Krasnogor, Paolo Zuliani	Modelling and Optimisation of a DNA Stack Nano-Device Using Probabilistic Model Checking.	DNA	2022	DBLP DOI BibTeX RDF
43	Hope Amber Johnson, Anne Condon	A Coupled Reconfiguration Mechanism for Single-Stranded DNA Strand Displacement Systems.	DNA	2022	DBLP DOI BibTeX RDF
43	Nicolas Levy, Nicolas Schabanel	ENSnano: A 3D Modeling Software for DNA Nanostructures.	DNA	2021	DBLP DOI BibTeX RDF
43	Tonglin Chen, Arnav Solanki, Marc D. Riedel	Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting, and Searching.	DNA	2021	DBLP DOI BibTeX RDF
43	David Doty, Benjamin L. Lee, Tristan Stérin	scadnano: A Browser-Based, Scriptable Tool for Designing DNA Nanostructures.	DNA	2020	DBLP DOI BibTeX RDF
43	Robert F. Johnson, Lulu Qian	Simplifying Chemical Reaction Network Implementations with Two-Stranded DNA Building Blocks.	DNA	2020	DBLP DOI BibTeX RDF
43	Sedigheh Zolaktaf, Frits Dannenberg, Erik Winfree, Alexandre Bouchard-Côté, Mark Schmidt 0001, Anne Condon	Efficient Parameter Estimation for DNA Kinetics Modeled as Continuous-Time Markov Chains.	DNA	2019	DBLP DOI BibTeX RDF
43	Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze	A Content-Addressable DNA Database with Learned Sequence Encodings.	DNA	2018	DBLP DOI BibTeX RDF
43	Constantine G. Evans, Erik Winfree	Optimizing Tile Set Size While Preserving Proofreading with a DNA Self-assembly Compiler.	DNA	2018	DBLP DOI BibTeX RDF
43	Shalin Shah, John H. Reif	Temporal DNA Barcodes: A Time-Based Approach for Single-Molecule Imaging.	DNA	2018	DBLP DOI BibTeX RDF
43	Bjarke N. Hansen, Kim S. Larsen, Daniel Merkle, Alexei Mihalchuk	DNA-Templated Synthesis Optimization.	DNA	2017	DBLP DOI BibTeX RDF
43	Matthew R. Lakin, Andrew Phillips	Automated, Constraint-Based Analysis of Tethered DNA Nanostructures.	DNA	2017	DBLP DOI BibTeX RDF
43	Sherry Xi Chen, Georg Seelig	A DNA Neural Network Constructed from Molecular Variable Gain Amplifiers.	DNA	2017	DBLP DOI BibTeX RDF
43	Sedigheh Zolaktaf, Frits Dannenberg, Xander Rudelis, Anne Condon, Joseph M. Schaeffer, Mark Schmidt 0001, Chris Thachuk, Erik Winfree	Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates.	DNA	2017	DBLP DOI BibTeX RDF
43	Vahid Mardanlou, Leopold N. Green, Hari K. K. Subramanian, Rizal F. Hariadi, Jongmin Kim 0001, Elisa Franco	A Coarse-Grained Model of DNA Nanotube Population Growth.	DNA	2016	DBLP DOI BibTeX RDF
43	Chris Thachuk, Erik Winfree, David Soloveichik	Leakless DNA Strand Displacement Systems.	DNA	2015	DBLP DOI BibTeX RDF
43	Michael A. Boemo, Andrew J. Turberfield, Luca Cardelli	Automated Design and Verification of Localized DNA Computation Circuits.	DNA	2015	DBLP DOI BibTeX RDF
43	Matthew R. Lakin, Darko Stefanovic	Supervised Learning in an Adaptive DNA Strand Displacement Circuit.	DNA	2015	DBLP DOI BibTeX RDF
43	Matthew R. Lakin, Rasmus L. Petersen, Kathryn E. Gray, Andrew Phillips	Abstract Modelling of Tethered DNA Circuits.	DNA	2014	DBLP DOI BibTeX RDF
43	Neil Dalchau, Georg Seelig, Andrew Phillips	Computational Design of Reaction-Diffusion Patterns Using DNA-Based Chemical Reaction Networks.	DNA	2014	DBLP DOI BibTeX RDF
43	Lulu Qian, Erik Winfree	Parallel and Scalable Computation and Spatial Dynamics with DNA-Based Chemical Reaction Networks on a Surface.	DNA	2014	DBLP DOI BibTeX RDF
43	Boyan Yordanov, Christoph M. Wintersteiger, Youssef Hamadi, Andrew Phillips, Hillel Kugler	Functional Analysis of Large-Scale DNA Strand Displacement Circuits.	DNA	2013	DBLP DOI BibTeX RDF
43	Constantine G. Evans, Erik Winfree	DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly.	DNA	2013	DBLP DOI BibTeX RDF
43	Matthew R. Lakin, Andrew Phillips, Darko Stefanovic	Modular Verification of DNA Strand Displacement Networks via Serializability Analysis.	DNA	2013	DBLP DOI BibTeX RDF
43	Frits Dannenberg, Marta Z. Kwiatkowska, Chris Thachuk, Andrew J. Turberfield	DNA Walker Circuits: Computational Potential, Design, and Verification.	DNA	2013	DBLP DOI BibTeX RDF
43	Mark G. Arnold	Extending DNA-Sticker Arithmetic to Arbitrary Size Using Staples.	DNA	2013	DBLP DOI BibTeX RDF
43	Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón	Probabilistic Reasoning with an Enzyme-Driven DNA Device.	DNA	2013	DBLP DOI BibTeX RDF
43	Alireza Goudarzi, Matthew R. Lakin, Darko Stefanovic	DNA Reservoir Computing: A Novel Molecular Computing Approach.	DNA	2013	DBLP DOI BibTeX RDF
43	Anton Kan, Ko-ichiroh Shohda, Akira Suyama	A DNA Based Molecular Logic Gate Capable of a Variety of Logical Operations.	DNA	2012	DBLP DOI BibTeX RDF
43	Eugen Czeizler, Alexandru Popa 0001	Synthesizing Minimal Tile Sets for Complex Patterns in the Framework of Patterned DNA Self-Assembly.	DNA	2012	DBLP DOI BibTeX RDF
43	Chris Thachuk, Anne Condon	Space and Energy Efficient Computation with DNA Strand Displacement Systems.	DNA	2012	DBLP DOI BibTeX RDF
43	Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón	Probabilistic Reasoning with a Bayesian DNA Device Based on Strand Displacement.	DNA	2012	DBLP DOI BibTeX RDF
43	Carsten Svaneborg, Harold Fellermann, Steen Rasmussen	DNA Self-Assembly and Computation Studied with a Coarse-Grained Dynamic Bonded Model.	DNA	2012	DBLP DOI BibTeX RDF
43	Max H. Garzon, Kiran C. Bobba	A Geometric Approach to Gibbs Energy Landscapes and Optimal DNA Codeword Design.	DNA	2012	DBLP DOI BibTeX RDF
43	Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche	Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes.	DNA	2011	DBLP DOI BibTeX RDF
43	Sunaina Surana, Souvik Modi, Yamuna Krishnan	An Autonomous DNA Nanodevice Captures pH Maps of Living Cells in Culture and in Vivo.	DNA	2011	DBLP DOI BibTeX RDF
43	Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík	Autonomous Resolution Based on DNA Strand Displacement.	DNA	2011	DBLP DOI BibTeX RDF
43	Hao Yan	Designer DNA Architectures for Bionanotechnology.	DNA	2011	DBLP DOI BibTeX RDF
43	Stavros Konstantinidis, Nicolae Santean	Computing Maximal Kleene Closures That Are Embeddable in a Given Constrained DNA Language.	DNA	2011	DBLP DOI BibTeX RDF
43	Tuomo Lempiäinen, Eugen Czeizler, Pekka Orponen	Synthesizing Small and Reliable Tile Sets for Patterned DNA Self-assembly.	DNA	2011	DBLP DOI BibTeX RDF
43	Mark G. Arnold	An Improved DNA-Sticker Addition Algorithm and Its Application to Logarithmic Arithmetic.	DNA	2011	DBLP DOI BibTeX RDF
43	Mika Göös, Pekka Orponen	Synthesizing Minimal Tile Sets for Patterned DNA Self-assembly.	DNA	2010	DBLP DOI BibTeX RDF
43	Elton Graugnard, Amber Cox, Jeunghoon Lee, Cheryl Jorcyk, Bernard Yurke, William L. Hughes	Operation of a DNA-Based Autocatalytic Network in Serum.	DNA	2010	DBLP DOI BibTeX RDF
43	David Yu Zhang, Georg Seelig	DNA-Based Fixed Gain Amplifiers and Linear Classifier Circuits.	DNA	2010	DBLP DOI BibTeX RDF
43	David Yu Zhang	Towards Domain-Based Sequence Design for DNA Strand Displacement Reactions.	DNA	2010	DBLP DOI BibTeX RDF
43	Ehsan Chiniforooshan, David Doty, Lila Kari, Shinnosuke Seki	Scalable, Time-Responsive, Digital, Energy-Efficient Molecular Circuits Using DNA Strand Displacement.	DNA	2010	DBLP DOI BibTeX RDF
43	Ho-Lin Chen, Ming-Yang Kao	Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems.	DNA	2010	DBLP DOI BibTeX RDF
43	Lulu Qian, David Soloveichik, Erik Winfree	Efficient Turing-Universal Computation with DNA Polymers.	DNA	2010	DBLP DOI BibTeX RDF
43	Mark Daley, Ian McQuillan	On Computational Properties of Template-Guided DNA Recombination.	DNA	2005	DBLP DOI BibTeX RDF
43	Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi	Specificity of Hybridization Between DNA Sequences Based on Free Energy.	DNA	2005	DBLP DOI BibTeX RDF
43	Natasa Jonoska, Kalpana Mahalingam	Languages of DNA Based Code Words.	DNA	2003	DBLP DOI BibTeX RDF
43	Ashish Goel, Friedrich C. Simmel, Petr Sosík (eds.)	DNA Computing, 14th International Meeting on DNA Computing, DNA 14, Prague, Czech Republic, June 2-9, 2008. Revised Selected Papers	DNA	2009	DBLP DOI BibTeX RDF
43	Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón	Sequentiality Induced by Spike Number in SNP Systems.	DNA	2008	DBLP DOI BibTeX RDF
43	Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai	Robust Self-assembly of Graphs.	DNA	2008	DBLP DOI BibTeX RDF
43	Yuriy Brun, Dustin Reishus	Connecting the Dots: Molecular Machinery for Distributed Robotics.	DNA	2008	DBLP DOI BibTeX RDF
43	Matthew J. Patitz, Scott M. Summers	Self-assembly of Discrete Self-similar Fractals.	DNA	2008	DBLP DOI BibTeX RDF
43	Claudio Ferretti, Giancarlo Mauri, Claudio Zandron (eds.)	DNA Computing, 10th International Workshop on DNA Computing, DNA 10, Milan, Italy, June 7-10, 2004, Revised Selected Papers	DNA	2005	DBLP DOI BibTeX RDF
43	David Soloveichik, Erik Winfree	Complexity of Self-assembled Shapes.	DNA	2004	DBLP DOI BibTeX RDF
43	Tero Harju, Maurice Margenstern	Splicing Systems for Universal Turing Machines.	DNA	2004	DBLP DOI BibTeX RDF
43	Artiom Alhazov, Matteo Cavaliere	Computing by Observing Bio-systems: The Case of Sticker Systems.	DNA	2004	DBLP DOI BibTeX RDF
43	Clint Morgan, Darko Stefanovic, Cristopher Moore, Milan N. Stojanovic	Building the Components for a Biomolecular Computer.	DNA	2004	DBLP DOI BibTeX RDF
43	Maurice Margenstern, Victor Mitrana, Mario J. Pérez-Jiménez	Accepting Hybrid Networks of Evolutionary Processors.	DNA	2004	DBLP DOI BibTeX RDF
43	Erzsébet Csuhaj-Varjú, Oscar H. Ibarra, György Vaszil	On the Computational Complexity of P Automata.	DNA	2004	DBLP DOI BibTeX RDF
43	Gheorghe Paun	From Cells to Computers: Membrane Computing - A Quick Overview.	DNA	2004	DBLP DOI BibTeX RDF
43	Cezar Câmpeanu, Andrei Paun	Computing Beyond the Turing Limit Using the H Systems.	DNA	2004	DBLP DOI BibTeX RDF
43	Anne Condon, Grzegorz Rozenberg (eds.)	DNA Computing, 6th International Workshop on DNA-Based Computers, DNA 2000, Leiden, The Netherlands, June 13-17, 2000, Revised Papers	DNA	2001	DBLP DOI BibTeX RDF
42	Lila Kari, Kalpana Mahalingam, Gabriel Thierrin	The syntactic monoid of hairpin-free languages.	Acta Informatica	2007	DBLP DOI BibTeX RDF
42	Lila Kari	Nanocomputing by Self-assembly.	UC	2007	DBLP DOI BibTeX RDF
42	Mital Kakaiya, Sushant Goel, Hema Sharda, David Taniar	Improving Web Server Performance by Distributing Web Applications.	IICS	2003	DBLP DOI BibTeX RDF
42	Yusuke Nakamura	Human genome analysis and medicine in the 21st century (abstract only).	RECOMB	2000	DBLP DOI BibTeX RDF
42	Allen P. Mills Jr., Bernard Yurke, Philip M. Platzman	DNA analog vector algebra and physical constraints on large-scale DNA-based neural network computation.	DNA Based Computers	1999	DBLP DOI BibTeX RDF
42	Takashi Yokomori, Satoshi Kobayashi	DNA-EC: A model of DNA-computing based on equality checking.	DNA Based Computers	1997	DBLP DOI BibTeX RDF
42	Masami Hagiya	From Molecular Computing to Molecular Programming.	DNA Computing	2000	DBLP DOI BibTeX RDF
42	Maurice Margenstern, Yurii Rogozhin	About Time-Varying Distributed H Systems.	DNA Computing	2000	DBLP DOI BibTeX RDF
42	Rudolf Freund, Franziska Freund	Molecular Computing with Generalized Homogeneous P-Systems.	DNA Computing	2000	DBLP DOI BibTeX RDF
42	Pierluigi Frisco	Diophantine Equations and Splicing: A New Demonstration of the Generative Capability of H Systems.	DNA Computing	2000	DBLP DOI BibTeX RDF
42	Ron Weiss, Thomas F. Knight Jr.	Engineered Communications for Microbial Robotics.	DNA Computing	2000	DBLP DOI BibTeX RDF
42	Cheng-Chang Jeng, I-Ching Yang, Kun-Lin Hsieh, Chun-Nan Lin	Clustering Analysis for Bacillus Genus Using Fourier Transform and Self-Organizing Map.	ICONIP (3)	2006	DBLP DOI BibTeX RDF	Bacillus, Self-organizing map, Fourier transform, DNA sequence
41	Lila Kari, Rob Kitto, Greg Gloor	A computer scientist's guide to molecular biology.	Soft Comput.	2001	DBLP DOI BibTeX RDF	In vivo DNA, In vitro DNA computing, Bio-operations
41	Rafael Navajas-Pérez, Manuel Ruiz Rejón, Manuel A. Garrido-Ramos, José Luis Aznarte, Cristina Rubio-Escudero	satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae).	BIRD	2007	DBLP DOI BibTeX RDF
40	Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon	NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots.	DNA	2009	DBLP DOI BibTeX RDF
40	Ashish Goel, Pablo Moisset de Espanés	Toward Minimum Size Self-Assembled Counters.	DNA	2007	DBLP DOI BibTeX RDF
40	Benedek Nagy	On 5' --> 3' Sensing Watson-Crick Finite Automata.	DNA	2007	DBLP DOI BibTeX RDF
40	Erzsébet Csuhaj-Varjú, Sergey Verlan	Length-Separating Test Tube Systems.	DNA	2006	DBLP DOI BibTeX RDF
40	Petr Sosík, Alfonso Rodríguez-Patón	P Systems with Active Membranes Characterize PSPACE.	DNA	2006	DBLP DOI BibTeX RDF
40	Lucian Ilie, Roberto Solis-Oba	Gene Assembly Algorithms for Ciliates.	DNA	2006	DBLP DOI BibTeX RDF	stichotrichs, gene assembly, dlad-first greedy strategy, algorithm, ciliates
40	Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boonsit Yimwadsana	On Times to Compute Shapes in 2D Tile Self-assembly.	DNA	2006	DBLP DOI BibTeX RDF
40	Thomas Keef	A Mathematical Approach to Cross-Linked Structures in Viral Capsids: Predicting the Architecture of Novel Containers for Drug Delivery.	DNA	2006	DBLP DOI BibTeX RDF
40	Sudheer Sahu, Peng Yin 0003, John H. Reif	A Self-assembly Model of Time-Dependent Glue Strength.	DNA	2005	DBLP DOI BibTeX RDF
40	Bei Wang 0001, Dimitris Papamichail, Steffen Mueller, Steven Skiena	Two Proteins for the Price of One: The Design of Maximally Compressed Coding Sequences.	DNA	2005	DBLP DOI BibTeX RDF
40	Atsushi Kijima, Satoshi Kobayashi	Efficient Algorithm for Testing Structure Freeness of Finite Set of Biomolecular Sequences.	DNA	2005	DBLP DOI BibTeX RDF
40	In-Hee Lee, Ji-Yoon Park, Young-Gyu Chai, Byoung-Tak Zhang	RCA-Based Detection Methods for Resolution Refutation.	DNA	2003	DBLP DOI BibTeX RDF
40	Jian-Qin Liu, Katsunori Shimohara	Biomolecular Computing by Encoding of Regulated Phosphorylation-Dephosphorylation and Logic of Kinase-Phosphatase in Cells.	DNA	2003	DBLP DOI BibTeX RDF
40	Matthew Cook 0001, Paul W. K. Rothemund, Erik Winfree	Self-Assembled Circuit Patterns.	DNA	2003	DBLP DOI BibTeX RDF
40	Erik Winfree, Renat Bekbolatov	Proofreading Tile Sets: Error Correction for Algorithmic Self-Assembly.	DNA	2003	DBLP DOI BibTeX RDF
40	Daisuke Matsuda, Masayuki Yamamura	Cascading Whiplash PCR with a Nicking Enzyme.	DNA	2002	DBLP DOI BibTeX RDF
40	Subhayu Basu, David K. Karig, Ron Weiss	Engineering Signal Processing in Cells: Towards Molecular Concentration Band Detection.	DNA	2002	DBLP DOI BibTeX RDF
40	Russell J. Deaton, Junghuei Chen, Hong Bi, Max H. Garzon, Harvey Rubin, David Harlan Wood	A PCR-based Protocol for In Vitro Selection of Non-crosshybridizing Oligonucleotides.	DNA	2002	DBLP DOI BibTeX RDF
40	Akihiro Takahara, Takashi Yokomori	On the Computational Power of Insertion-Deletion Systems.	DNA	2002	DBLP DOI BibTeX RDF