Search results for "DNA-computing"

Hits ?▲	Authors	Title	Venue	Year	Link
20	Joseph Don Berleant	Rational Design of DNA Sequences with Non-Orthogonal Binding Interactions.	DNA	2023	DBLP DOI BibTeX RDF
20	Anne Condon, Yuval Emek, Noga Harlev	On the Runtime of Chemical Reaction Networks Beyond Idealized Conditions.	DNA	2023	DBLP DOI BibTeX RDF
20	Florent Becker, Shahrzad Heydarshahi	DNA Tile Self-Assembly for 3D-Surfaces: Towards Genus Identification.	DNA	2023	DBLP DOI BibTeX RDF
20	Ahmed Shalaby 0005, Chris Thachuk, Damien Woods	Minimum Free Energy, Partition Function and Kinetics Simulation Algorithms for a Multistranded Scaffolded DNA Computer.	DNA	2023	DBLP DOI BibTeX RDF
20	Jordan Lovrod, Boyan Beronov, Chenwei Zhang, Erik Winfree, Anne Condon	Revisiting Hybridization Kinetics with Improved Elementary Step Simulation.	DNA	2023	DBLP DOI BibTeX RDF
20	David Doty, Hunter Fleming, Daniel Hader, Matthew J. Patitz, Lukas A. Vaughan	Accelerating Self-Assembly of Crisscross Slat Systems.	DNA	2023	DBLP DOI BibTeX RDF
20	Joshua Petrack, David Soloveichik, David Doty	Thermodynamically Driven Signal Amplification.	DNA	2023	DBLP DOI BibTeX RDF
20	Austin Luchsinger, David Doty, David Soloveichik	Optimal Information Encoding in Chemical Reaction Networks.	DNA	2023	DBLP DOI BibTeX RDF
20	Thomas E. Ouldridge, Shelley F. J. Wickham (eds.)	28th International Conference on DNA Computing and Molecular Programming, DNA 28, August 8-12, 2022, University of New Mexico, Albuquerque, New Mexico, USA.	DNA	2022	DBLP BibTeX RDF
20	Samuel Nalin, Guillaume Theyssier	On Turedo Hierarchies and Intrinsic Universality.	DNA	2022	DBLP DOI BibTeX RDF
20	Bowen Li 0005, Neil Mackenzie, Ben Shirt-Ediss, Natalio Krasnogor, Paolo Zuliani	Modelling and Optimisation of a DNA Stack Nano-Device Using Probabilistic Model Checking.	DNA	2022	DBLP DOI BibTeX RDF
20	Xiang Huang 0001, Rachel N. Huls	Computing Real Numbers with Large-Population Protocols Having a Continuum of Equilibria.	DNA	2022	DBLP DOI BibTeX RDF
20	Kuan-Lin Chen, Rebecca Schulman	Exploring Material Design Space with a Deep-Learning Guided Genetic Algorithm.	DNA	2022	DBLP DOI BibTeX RDF
20	Tiernan Kennedy, Cadence Pearce, Chris Thachuk	Fast and Robust Strand Displacement Cascades via Systematic Design Strategies.	DNA	2022	DBLP DOI BibTeX RDF
20	Andreas Padalkin, Christian Scheideler, Daniel Warner 0001	The Structural Power of Reconfigurable Circuits in the Amoebot Model.	DNA	2022	DBLP DOI BibTeX RDF
20	Andrew Alseth, Daniel Hader, Matthew J. Patitz	Universal Shape Replication via Self-Assembly with Signal-Passing Tiles (Extended Abstract).	DNA	2022	DBLP DOI BibTeX RDF
20	Irina Kostitsyna, Christian Scheideler, Daniel Warner 0001	Fault-Tolerant Shape Formation in the Amoebot Model.	DNA	2022	DBLP DOI BibTeX RDF
20		Front Matter, Table of Contents, Preface, Conference Organization.	DNA	2022	DBLP DOI BibTeX RDF
20	Hope Amber Johnson, Anne Condon	A Coupled Reconfiguration Mechanism for Single-Stranded DNA Strand Displacement Systems.	DNA	2022	DBLP DOI BibTeX RDF
20	Matthew R. Lakin, Petr Sulc (eds.)	27th International Conference on DNA Computing and Molecular Programming, DNA 27, September 13-16, 2021, Oxford, UK (Virtual Conference).	DNA	2021	DBLP BibTeX RDF
20	Keenan Breik, Austin Luchsinger, David Soloveichik	Molecular Machines from Topological Linkages.	DNA	2021	DBLP DOI BibTeX RDF
20	Pierre-Étienne Meunier, Damien Regnault	Directed Non-Cooperative Tile Assembly Is Decidable.	DNA	2021	DBLP DOI BibTeX RDF
20		Front Matter, Table of Contents, Preface, Conference Organization.	DNA	2021	DBLP DOI BibTeX RDF
20	Johannes Linder, Yuan-Jyue Chen, David Wong, Georg Seelig, Luis Ceze, Karin Strauss	Robust Digital Molecular Design of Binarized Neural Networks.	DNA	2021	DBLP DOI BibTeX RDF
20	Andrew Alseth, Daniel Hader, Matthew J. Patitz	Self-Replication via Tile Self-Assembly (Extended Abstract).	DNA	2021	DBLP DOI BibTeX RDF
20	David Haley, David Doty	Computing Properties of Thermodynamic Binding Networks: An Integer Programming Approach.	DNA	2021	DBLP DOI BibTeX RDF
20	Nicolas Levy, Nicolas Schabanel	ENSnano: A 3D Modeling Software for DNA Nanostructures.	DNA	2021	DBLP DOI BibTeX RDF
20	David Furcy, Scott M. Summers, Logan Withers	Improved Lower and Upper Bounds on the Tile Complexity of Uniquely Self-Assembling a Thin Rectangle Non-Cooperatively in 3D.	DNA	2021	DBLP DOI BibTeX RDF
20	Titus H. Klinge, James I. Lathrop, Peter-Michael Osera, Allison Rogers	Reactamole: Functional Reactive Molecular Programming.	DNA	2021	DBLP DOI BibTeX RDF
20	Tonglin Chen, Arnav Solanki, Marc D. Riedel	Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting, and Searching.	DNA	2021	DBLP DOI BibTeX RDF
20	Matthew Cook, Tristan Stérin, Damien Woods	Small Tile Sets That Compute While Solving Mazes.	DNA	2021	DBLP DOI BibTeX RDF
20	Anne Condon, Monir Hajiaghayi, Chris Thachuk	Predicting Minimum Free Energy Structures of Multi-Stranded Nucleic Acid Complexes Is APX-Hard.	DNA	2021	DBLP DOI BibTeX RDF
20	Cody W. Geary, Matthew J. Patitz (eds.)	26th International Conference on DNA Computing and Molecular Programming, DNA 26, September 14-17, 2020, Oxford, UK (Virtual Conference).	DNA	2020	DBLP BibTeX RDF
20	Abdulmelik Mohammed, Natasa Jonoska, Masahico Saito	The Topology of Scaffold Routings on Non-Spherical Mesh Wireframes.	DNA	2020	DBLP DOI BibTeX RDF
20		Front Matter, Table of Contents, Preface, Conference Organization.	DNA	2020	DBLP DOI BibTeX RDF
20	Yuta Matsumura, Ibuki Kawamata, Satoshi Murata	Design Automation of Polyomino Set That Self-Assembles into a Desired Shape.	DNA	2020	DBLP DOI BibTeX RDF
20	James I. Lathrop, Jack H. Lutz, Robyn R. Lutz, Hugh D. Potter, Matthew R. Riley	Population-Induced Phase Transitions and the Verification of Chemical Reaction Networks.	DNA	2020	DBLP DOI BibTeX RDF
20	David Caballero, Timothy Gomez, Robert T. Schweller, Tim Wylie	Verification and Computation in Restricted Tile Automata.	DNA	2020	DBLP DOI BibTeX RDF
20	Marko Vasic, David Soloveichik, Sarfraz Khurshid	CRNs Exposed: A Method for the Systematic Exploration of Chemical Reaction Networks.	DNA	2020	DBLP DOI BibTeX RDF
20	Irina Kostitsyna, Cai Wood, Damien Woods	Turning Machines.	DNA	2020	DBLP DOI BibTeX RDF
20	David Doty, Benjamin L. Lee, Tristan Stérin	scadnano: A Browser-Based, Scriptable Tool for Designing DNA Nanostructures.	DNA	2020	DBLP DOI BibTeX RDF
20	Hooman Hashemi, Ben Chugg, Anne Condon	Composable Computation in Leaderless, Discrete Chemical Reaction Networks.	DNA	2020	DBLP DOI BibTeX RDF
20	Titus H. Klinge, James I. Lathrop, Sonia Moreno, Hugh D. Potter, Narun K. Raman, Matthew R. Riley	ALCH: An Imperative Language for Chemical Reaction Network-Controlled Tile Assembly.	DNA	2020	DBLP DOI BibTeX RDF
20	Antti Lankinen, Ismael Mullor Ruiz, Thomas E. Ouldridge	Implementing Non-Equilibrium Networks with Active Circuits of Duplex Catalysts.	DNA	2020	DBLP DOI BibTeX RDF
20	Robert F. Johnson, Lulu Qian	Simplifying Chemical Reaction Network Implementations with Two-Stranded DNA Building Blocks.	DNA	2020	DBLP DOI BibTeX RDF
20	Chris Thachuk, Yan Liu 0037 (eds.)	DNA Computing and Molecular Programming - 25th International Conference, DNA 25, Seattle, WA, USA, August 5-9, 2019, Proceedings	DNA	2019	DBLP DOI BibTeX RDF
20	Shuang Cui, Wei-Ping Peng, Cheng Song	Research on DNA Cryptosystem Based on DNA Computing.	BIC-TA (2)	2019	DBLP DOI BibTeX RDF
20	John Calvin Alumbaugh, Joshua J. Daymude, Erik D. Demaine, Matthew J. Patitz, Andréa W. Richa	Simulation of Programmable Matter Systems Using Active Tile-Based Self-Assembly.	DNA	2019	DBLP DOI BibTeX RDF
20	Pierre-Étienne Meunier, Damien Regnault	Non-cooperatively Assembling Large Structures.	DNA	2019	DBLP DOI BibTeX RDF
20	David Furcy, Scott M. Summers, Christian Wendlandt	New Bounds on the Tile Complexity of Thin Rectangles at Temperature-1.	DNA	2019	DBLP DOI BibTeX RDF
20	Xiang Huang 0001, Titus H. Klinge, James I. Lathrop	Real-Time Equivalence of Chemical Reaction Networks and Analog Computers.	DNA	2019	DBLP DOI BibTeX RDF
20	Boya Wang, Cameron T. Chalk, David Soloveichik	SIMD\|\|DNA: Single Instruction, Multiple Data Computation with DNA Strand Displacement Cascades.	DNA	2019	DBLP DOI BibTeX RDF
20	Sedigheh Zolaktaf, Frits Dannenberg, Erik Winfree, Alexandre Bouchard-Côté, Mark Schmidt 0001, Anne Condon	Efficient Parameter Estimation for DNA Kinetics Modeled as Continuous-Time Markov Chains.	DNA	2019	DBLP DOI BibTeX RDF
20	Allison Tai, Anne Condon	Error-Free Stable Computation with Polymer-Supplemented Chemical Reaction Networks.	DNA	2019	DBLP DOI BibTeX RDF
20	Shalin Shah, Tianqi Song, Xin Song, Ming Yang, John H. Reif	Implementing Arbitrary CRNs Using Strand Displacing Polymerase.	DNA	2019	DBLP DOI BibTeX RDF
20	Abhinav Singh, Carsten Wiuf, Abhishek Behera, Manoj Gopalkrishnan	A Reaction Network Scheme Which Implements Inference and Learning for Hidden Markov Models.	DNA	2019	DBLP DOI BibTeX RDF
20	Tatiana Brailovskaya, Gokul Gowri, Sean Yu, Erik Winfree	Reversible Computation Using Swap Reactions on a Surface.	DNA	2019	DBLP DOI BibTeX RDF
20	Erik Winfree	Chemical Reaction Networks and Stochastic Local Search.	DNA	2019	DBLP DOI BibTeX RDF
20	Gokul Gowri, Randolph Lopez, Georg Seelig	Combined Amplification and Molecular Classification for Gene Expression Diagnostics.	DNA	2019	DBLP DOI BibTeX RDF
20	David Doty, Hendrik Dietz (eds.)	DNA Computing and Molecular Programming - 24th International Conference, DNA 24, Jinan, China, October 8-12, 2018, Proceedings	DNA	2018	DBLP DOI BibTeX RDF
20	Jérôme Durand-Lose, Jacob Hendricks, Matthew J. Patitz, Ian Perkins, Michael Sharp	Self-assembly of 3-D Structures Using 2-D Folding Tiles.	DNA	2018	DBLP DOI BibTeX RDF
20	Yo-Sub Han, Hwee Kim, Shinnosuke Seki	Transcript Design Problem of Oritatami Systems.	DNA	2018	DBLP DOI BibTeX RDF
20	Robert Gmyr, Kristian Hinnenthal, Irina Kostitsyna, Fabian Kuhn, Dorian Rudolph, Christian Scheideler, Thim Strothmann	Forming Tile Shapes with Simple Robots.	DNA	2018	DBLP DOI BibTeX RDF
20	Kendall Stewart, Yuan-Jyue Chen, David Ward, Xiaomeng Liu, Georg Seelig, Karin Strauss, Luis Ceze	A Content-Addressable DNA Database with Learned Sequence Encodings.	DNA	2018	DBLP DOI BibTeX RDF
20	Marko Vasic, David Soloveichik, Sarfraz Khurshid	: Molecular Programming Language.	DNA	2018	DBLP DOI BibTeX RDF
20	Yo-Sub Han, Hwee Kim	Construction of Geometric Structure by Oritatami System.	DNA	2018	DBLP DOI BibTeX RDF
20	Constantine G. Evans, Erik Winfree	Optimizing Tile Set Size While Preserving Proofreading with a DNA Self-assembly Compiler.	DNA	2018	DBLP DOI BibTeX RDF
20	Muppirala Viswa Virinchi, Abhishek Behera, Manoj Gopalkrishnan	A Reaction Network Scheme Which Implements the EM Algorithm.	DNA	2018	DBLP DOI BibTeX RDF
20	Jacob Hendricks, Joseph Opseth, Matthew J. Patitz, Scott M. Summers	Hierarchical Growth Is Necessary and (Sometimes) Sufficient to Self-assemble Discrete Self-similar Fractals.	DNA	2018	DBLP DOI BibTeX RDF
20	Cameron T. Chalk, Austin Luchsinger, Eric Martinez, Robert T. Schweller, Andrew Winslow, Tim Wylie	Freezing Simulates Non-freezing Tile Automata.	DNA	2018	DBLP DOI BibTeX RDF
20	Shalin Shah, John H. Reif	Temporal DNA Barcodes: A Time-Based Approach for Single-Molecule Imaging.	DNA	2018	DBLP DOI BibTeX RDF
20	Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, Hadley Thomas	Know When to Fold 'Em: Self-assembly of Shapes by Folding in Oritatami.	DNA	2018	DBLP DOI BibTeX RDF
20	Robert Brijder, Lulu Qian (eds.)	DNA Computing and Molecular Programming - 23rd International Conference, DNA 23, Austin, TX, USA, September 24-28, 2017, Proceedings	DNA	2017	DBLP DOI BibTeX RDF
20	Yo-Sub Han, Hwee Kim	Ruleset Optimization on Isomorphic Oritatami Systems.	DNA	2017	DBLP DOI BibTeX RDF
20	Bjarke N. Hansen, Kim S. Larsen, Daniel Merkle, Alexei Mihalchuk	DNA-Templated Synthesis Optimization.	DNA	2017	DBLP DOI BibTeX RDF
20	Robert T. Schweller, Andrew Winslow, Tim Wylie	Complexities for High-Temperature Two-Handed Tile Self-assembly.	DNA	2017	DBLP DOI BibTeX RDF
20	Matthew R. Lakin, Andrew Phillips	Automated, Constraint-Based Analysis of Tethered DNA Nanostructures.	DNA	2017	DBLP DOI BibTeX RDF
20	Dan Alistarh, Bartlomiej Dudek 0001, Adrian Kosowski, David Soloveichik, Przemyslaw Uznanski	Robust Detection in Leak-Prone Population Protocols.	DNA	2017	DBLP DOI BibTeX RDF
20	Marta Andrés Arroyo, Sarah Cannon, Joshua J. Daymude, Dana Randall, Andréa W. Richa	A Stochastic Approach to Shortcut Bridging in Programmable Matter.	DNA	2017	DBLP DOI BibTeX RDF
20	Yen-Ru Chin, Jui-Ting Tsai, Ho-Lin Chen	A Minimal Requirement for Self-assembly of Lines in Polylogarithmic Time.	DNA	2017	DBLP DOI BibTeX RDF
20	Stefan Badelt, Seung Woo Shin, Robert F. Johnson, Qing Dong, Chris Thachuk, Erik Winfree	A General-Purpose CRN-to-DSD Compiler with Formal Verification, Optimization, and Simulation Capabilities.	DNA	2017	DBLP DOI BibTeX RDF
20	William Poole, Andrés Ortiz-Muñoz, Abhishek Behera, Nick S. Jones, Thomas E. Ouldridge, Erik Winfree, Manoj Gopalkrishnan	Chemical Boltzmann Machines.	DNA	2017	DBLP DOI BibTeX RDF
20	Sherry Xi Chen, Georg Seelig	A DNA Neural Network Constructed from Molecular Variable Gain Amplifiers.	DNA	2017	DBLP DOI BibTeX RDF
20	Abdulmelik Mohammed, Mustafa Hajij	Unknotted Strand Routings of Triangulated Meshes.	DNA	2017	DBLP DOI BibTeX RDF
20	David Doty, Trent A. Rogers, David Soloveichik, Chris Thachuk, Damien Woods	Thermodynamic Binding Networks.	DNA	2017	DBLP DOI BibTeX RDF
20	Anne Condon, Monir Hajiaghayi, David G. Kirkpatrick, Ján Manuch	Simplifying Analyses of Chemical Reaction Networks for Approximate Majority.	DNA	2017	DBLP DOI BibTeX RDF
20	Sedigheh Zolaktaf, Frits Dannenberg, Xander Rudelis, Anne Condon, Joseph M. Schaeffer, Mark Schmidt 0001, Chris Thachuk, Erik Winfree	Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates.	DNA	2017	DBLP DOI BibTeX RDF
20	Muppirala Viswa Virinchi, Abhishek Behera, Manoj Gopalkrishnan	A Stochastic Molecular Scheme for an Artificial Cell to Infer Its Environment from Partial Observations.	DNA	2017	DBLP DOI BibTeX RDF
20	Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik	The Design Space of Strand Displacement Cascades with Toehold-Size Clamps.	DNA	2017	DBLP DOI BibTeX RDF
20	Yannick Rondelez, Damien Woods (eds.)	DNA Computing and Molecular Programming - 22nd International Conference, DNA 22, Munich, Germany, September 4-8, 2016, Proceedings	DNA	2016	DBLP DOI BibTeX RDF
20	Luca Cardelli, Marta Kwiatkowska, Max Whitby	Chemical Reaction Network Designs for Asynchronous Logic Circuits.	DNA	2016	DBLP DOI BibTeX RDF
20	Robert Brijder, David Doty, David Soloveichik	Robustness of Expressivity in Chemical Reaction Networks.	DNA	2016	DBLP DOI BibTeX RDF
20	Luca Cardelli, Marta Kwiatkowska, Luca Laurenti	Programming Discrete Distributions with Chemical Reaction Networks.	DNA	2016	DBLP DOI BibTeX RDF
20	Robert F. Johnson, Qing Dong, Erik Winfree	Verifying Chemical Reaction Network Implementations: A Bisimulation Approach.	DNA	2016	DBLP DOI BibTeX RDF
20	Vahid Mardanlou, Leopold N. Green, Hari K. K. Subramanian, Rizal F. Hariadi, Jongmin Kim 0001, Elisa Franco	A Coarse-Grained Model of DNA Nanotube Population Growth.	DNA	2016	DBLP DOI BibTeX RDF
20	Manoj Gopalkrishnan	A Scheme for Molecular Computation of Maximum Likelihood Estimators for Log-Linear Models.	DNA	2016	DBLP DOI BibTeX RDF
20	Yo-Sub Han, Hwee Kim, Makoto Ota, Shinnosuke Seki	Nondeterministic Seedless Oritatami Systems and Hardness of Testing Their Equivalence.	DNA	2016	DBLP DOI BibTeX RDF
20	Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Hadley Thomas	Hierarchical Self-Assembly of Fractals with Signal-Passing Tiles - (Extended Abstract).	DNA	2016	DBLP DOI BibTeX RDF
20	Zahra Derakhshandeh, Robert Gmyr, Alexandra M. Porter, Andréa W. Richa, Christian Scheideler, Thim Strothmann	On the Runtime of Universal Coating for Programmable Matter.	DNA	2016	DBLP DOI BibTeX RDF
20	Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller, Scott M. Summers, Andrew Winslow	Resiliency to Multiple Nucleation in Temperature-1 Self-Assembly.	DNA	2016	DBLP DOI BibTeX RDF