Search results for "Haplotype"

Hits ?▲	Authors	Title	Venue	Year	Link
17	Guido H. Jajamovich, Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang 0001	Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA.	BMC Bioinform.	2013	DBLP DOI BibTeX RDF
17	Jingli Wu, Jianxin Wang 0001, Jianer Chen	A heuristic algorithm for haplotype reconstruction from aligned weighted SNP fragments.	Int. J. Bioinform. Res. Appl.	2013	DBLP DOI BibTeX RDF
17	Dong Do Duc, Sy Vinh Le, Huan Hoang Xuan	ACOHAP: an efficient ant colony optimization for the haplotype inference by pure parsimony problem.	Swarm Intell.	2013	DBLP DOI BibTeX RDF
17	Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He 0001, Bogdan Pasaniuc, Eleazar Eskin	Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.	Bioinform.	2013	DBLP DOI BibTeX RDF
17	Zhi-Zhong Chen, Fei Deng, Lusheng Wang 0001	Exact algorithms for haplotype assembly from whole-genome sequence data.	Bioinform.	2013	DBLP DOI BibTeX RDF
17	Pier Francesco Palamara, Itsik Pe'er	Inference of historical migration rates via haplotype sharing.	Bioinform.	2013	DBLP DOI BibTeX RDF
17	Androniki Menelaou, Jonathan Marchini	Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold.	Bioinform.	2013	DBLP DOI BibTeX RDF
17	Derek Aguiar, Sorin Istrail	Haplotype assembly in polyploid genomes and identical by descent shared tracts.	Bioinform.	2013	DBLP DOI BibTeX RDF
17	Jingli Wu, Binbin Liang	A Fast and Accurate Algorithm for Diploid Individual Haplotype Reconstruction.	J. Bioinform. Comput. Biol.	2013	DBLP DOI BibTeX RDF
17	María M. Abad-Grau, Nuria Medina-Medina, Serafín Moral, Rosana Montes-Soldado, Sergio Torres-Sánchez, Fuencisla Matesanz	Increasing Power by using Haplotype Similarity in a Multimarker Transmission/disequilibrium Test.	J. Bioinform. Comput. Biol.	2013	DBLP DOI BibTeX RDF
17	Dan He 0001, Buhm Han, Eleazar Eskin	Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data.	J. Comput. Biol.	2013	DBLP DOI BibTeX RDF
17	Shruthi Prabhakara, Raunaq Malhotra, Raj Acharya, Mary Poss	Mutant-Bin: Unsupervised Haplotype Estimation of Viral Population Diversity Without Reference Genome.	J. Comput. Biol.	2013	DBLP DOI BibTeX RDF
17	Xiao Chen, Qinke Peng, LiBin Han	A Data Parallel Strategy for Haplotype Assembly Problem on Multi-core Computers.	HPCC/EUC	2013	DBLP DOI BibTeX RDF
17	Zrinka Puljiz, Haris Vikalo	A message passing algorithm for haplotype assembly.	ACSSC	2013	DBLP DOI BibTeX RDF
17	Soyeon Ahn, Haris Vikalo	Deterministic sequential Monte Carlo for haplotype inference.	GlobalSIP	2013	DBLP DOI BibTeX RDF
17	Yang Yang, Minzhu Xie	A parameterized enumeration algorithm for the haplotype assembly problem.	BMEI	2013	DBLP DOI BibTeX RDF
17	Dimitra Kamari, María del Mar Abad-Grau, Fuencisla Matesanz	HaptreeBuilder: Web Generation and Visualization of Risk Haplotype Trees.	PACBB	2013	DBLP DOI BibTeX RDF
17	Armin Töpfer, Francesca Di Giallonardo, Karin J. Metzner, Huldrych F. Günthard, Niko Beerenwinkel	Probing of viral diversity by global haplotype prediction.	ICCABS	2013	DBLP DOI BibTeX RDF
17	Rogério S. Rosa, Katia S. Guimarães	HybHap: A Fast and Accurate Hybrid Approach for Haplotype Inference on Large Datasets.	BSB	2013	DBLP DOI BibTeX RDF
17	Yuri Pirola, Gianluca Della Vedova, Paola Bonizzoni, Alessandra Stella, Filippo Biscarini	Haplotype-based prediction of gene alleles using pedigrees and SNP genotypes.	BCB	2013	DBLP DOI BibTeX RDF
17	Yi Liu 0063	Fast and Accurate Haplotype Inference with Hidden Markov Model.		2013	DOI RDF
17	Yuri Pirola, Paola Bonizzoni, Tao Jiang 0001	An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations.	IEEE ACM Trans. Comput. Biol. Bioinform.	2012	DBLP DOI BibTeX RDF
17	En-Yu Lai, Wei-Bung Wang, Tao Jiang 0001, Kun-Pin Wu	A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on a pedigree.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
17	Anatoly Efros, Eran Halperin	Haplotype reconstruction using perfect phylogeny and sequence data.	BMC Bioinform.	2012	DBLP DOI BibTeX RDF
17	Jing Xiao, Tiancheng Lou, Tao Jiang 0001	An Efficient Algorithm for Haplotype Inference on Pedigrees with a Small Number of Recombinants.	Algorithmica	2012	DBLP DOI BibTeX RDF
17	Mathieu Gautier, Renaud Vitalis	rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure.	Bioinform.	2012	DBLP DOI BibTeX RDF
17	Z. Zhang, François Guillaume, A. Sartelet, Carole Charlier, Michel Georges, Frédéric Farnir, Tom Druet	Ancestral haplotype-based association mapping with generalized linear mixed models accounting for stratification.	Bioinform.	2012	DBLP DOI BibTeX RDF
17	Degui Zhi, Jihua Wu, Nianjun Liu, Kui Zhang	Genotype calling from next-generation sequencing data using haplotype information of reads.	Bioinform.	2012	DBLP DOI BibTeX RDF
17	Chul Joo Kang, Paul Marjoram	Exact coalescent simulation of new haplotype data from existing reference haplotypes.	Bioinform.	2012	DBLP DOI BibTeX RDF
17	Nebojsa Jojic, Vladimir Jojic, David Heckerman	Joint discovery of haplotype blocks and complex trait associations from SNP sequences	CoRR	2012	DBLP BibTeX RDF
17	Riccardo Dondi	New results for the Longest Haplotype Reconstruction problem.	Discret. Appl. Math.	2012	DBLP DOI BibTeX RDF
17	Guido H. Jajamovich, Xiaodong Wang 0001	Maximum-Parsimony Haplotype Inference Based on Sparse Representations of Genotypes.	IEEE Trans. Signal Process.	2012	DBLP DOI BibTeX RDF
17	Xin-Shun Xu, Ying-Xin Li	Semi-supervised clustering algorithm for haplotype assembly problem based on MEC model.	Int. J. Data Min. Bioinform.	2012	DBLP DOI BibTeX RDF
17	Tai-Chun Wang, Javid Taheri, Albert Y. Zomaya	Using genetic algorithm in reconstructing single individual haplotype with minimum error correction.	J. Biomed. Informatics	2012	DBLP DOI BibTeX RDF
17	Michael Elberfeld, Till Tantau	Phylogeny- and parsimony-based haplotype inference with constraints.	Inf. Comput.	2012	DBLP DOI BibTeX RDF
17	Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao	Algorithm for Haplotype Inference via Galled-Tree Networks with Simple Galls.	J. Comput. Biol.	2012	DBLP DOI BibTeX RDF
17	Derek Aguiar, Sorin Istrail	HapCompass: A Fast Cycle Basis Algorithm for Accurate Haplotype Assembly of Sequence Data.	J. Comput. Biol.	2012	DBLP DOI BibTeX RDF
17	Ioanna Manolopoulou, Brent C. Emerson	Phylogeographic Ancestral Inference Using the Coalescent Model on Haplotype Trees.	J. Comput. Biol.	2012	DBLP DOI BibTeX RDF
17	Yongxi Cheng, Guohui Lin	Solving haplotype inference problem with non-genotyped founders via integer linear programming.	J. Comb. Optim.	2012	DBLP DOI BibTeX RDF
17	Vanja Paunic, Michael S. Steinbach, Vipin Kumar 0001, Martin Maiers	Prediction of HLA Genes from SNP Data and HLA Haplotype Frequencies.	ICDM Workshops	2012	DBLP DOI BibTeX RDF
17	Dan He 0001, Buhm Han, Eleazar Eskin	Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data.	RECOMB	2012	DBLP DOI BibTeX RDF
17	María M. Abad-Grau, Nuria Medina-Medina, Andrés R. Masegosa, Serafín Moral	Haplotype-based Classifiers to Predict Individual Susceptibility to Complex Diseases - An Example for Multiple Sclerosis.	BIOINFORMATICS	2012	DBLP BibTeX RDF
17	Sergio Torres-Sánchez, Manuel García Sánchez, Germán Arroyo, Nuria Medina-Medina, Rosana Montes-Soldado, Francisco Soler-Martínez, María M. Abad-Grau	3D Visualization of Haplotype Risk Maps.	BIOINFORMATICS	2012	DBLP BibTeX RDF
17	Ana Paula Moreira Bezerra, Samara C. Silva-Santiago, Diana M. Oliveira, Elton José R. Vasconcelos, Mônica Moraes Silva, Ana Carolina L. Pacheco	In silico analyses of 24 human imprinted genes associated to diabesin triad (diabetes, obesity and inflammation): In search for a potential diabesin risk haplotype.	BIBM Workshops	2012	DBLP DOI BibTeX RDF
17	Derek Aguiar, Sorin Istrail	Workshop: Robust algorithms for inferring haplotype phase and deletion polymorphism from high-throughput whole genome sequence data.	ICCABS	2012	DBLP DOI BibTeX RDF
17	Rogério S. Rosa, Rafael H. S. Santos, Katia S. Guimarães	Accurate prediction of error in Haplotype Inference methods through neural networks.	IJCNN	2012	DBLP DOI BibTeX RDF
17	Rogério S. Rosa, Rafael H. S. Santos, Katia S. Guimarães	Associating Genotype Sequence Properties to Haplotype Inference Errors.	BSB	2012	DBLP DOI BibTeX RDF
17	Carl Nettelblad	Two Optimization Problems in Genetics : Multi-dimensional QTL Analysis and Haplotype Inference.		2012	RDF
17	Ana Graça, João Marques-Silva 0001, Inês Lynce, Arlindo L. Oliveira	Haplotype inference with pseudo-Boolean optimization.	Ann. Oper. Res.	2011	DBLP DOI BibTeX RDF
17	Dario Gasbarra, Sangita Kulathinal, Matti Pirinen, Mikko J. Sillanpää	Estimating Haplotype Frequencies by Combining Data from Large DNA Pools with Database Information.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
17	Ekhine Irurozki, Borja Calvo, José Antonio Lozano 0001	A Preprocessing Procedure for Haplotype Inference by Pure Parsimony.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
17	Christine Lo, Ali Bashir, Vikas Bansal 0001, Vineet Bafna	Strobe sequence design for haplotype assembly.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
17	Winnie S. Liang, Kewei Chen 0001, Wendy Lee, Kunal Sidhar, Jason J. Corneveaux, April N. Allen, Amanda Myers, Stephen Villa, Bessie Meechoovet, Jeremy Pruzin, Daniel Bandy, Adam Fleisher, Jessica B. S. Langbaum, Matthew J. Huentelman, Kendall Jensen, Travis Dunckley, Richard J. Caselli, Susan Kaib, Eric Reiman	Association between GAB2 haplotype and higher glucose metabolism in Alzheimer's disease-affected brain regions in cognitively normal APOEε4 carriers.	NeuroImage	2011	DBLP DOI BibTeX RDF
17	Winnie S. Liang, Kewei Chen 0001, Wendy Lee, Kunal Sidhar, Jason J. Corneveaux, April N. Allen, Amanda Myers, Stephen Villa, Bessie Meechoovet, Jeremy Pruzin, Daniel Bandy, Adam Fleisher, Jessica B. S. Langbaum, Matthew J. Huentelman, Kendall Jensen, Travis Dunckley, Richard J. Caselli, Susan Kaib, Eric Reiman	Corrigendum to "Association between GAB2 haplotype and higher glucose metabolism in Alzheimer's disease-affected brain regions in cognitively normal APOEε4 carriers" [NeuroImage 54/3 (2011) 1896-1902].	NeuroImage	2011	DBLP DOI BibTeX RDF
17	Antonio Cerasa, Aldo Quattrone, Maria C. Gioia, Patrizia Tarantino, Grazia Annesi, Francesca Assogna, Carlo Caltagirone, Vincenzo De Luca, Gianfranco Spalletta	Dysbindin C-A-T haplotype is associated with thicker medial orbitofrontal cortex in healthy population.	NeuroImage	2011	DBLP DOI BibTeX RDF
17	Kazuharu Misawa, Naoyuki Kamatani	ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing.	Source Code Biol. Medicine	2011	DBLP DOI BibTeX RDF
17	Jong Hyun Kim, Woo-Cheol Kim, Lei M. Li, Sanghyun Park 0003	HapEdit: an accuracy assessment viewer for haplotype assembly using massively parallel DNA-sequencing technologies.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
17	Yuri Pirola, Gianluca Della Vedova, Stefano Biffani, Alessandra Stella, Paola Bonizzoni	Haplotype Inference on Pedigrees with Recombinations, Errors, and Missing Genotypes via SAT solvers	CoRR	2011	DBLP BibTeX RDF
17	Xin Li, Jing Li 0002	Haplotype Reconstruction in Large Pedigrees with Untyped Individuals through IBD Inference.	J. Comput. Biol.	2011	DBLP DOI BibTeX RDF
17	Ana Graça, João Marques-Silva 0001, Inês Lynce	Haplotype Inference Using Propositional Satisfiability.	Mathematical Approaches to Polymer Sequence Analysis and Related Problems	2011	DBLP DOI BibTeX RDF
17	Bjarni V. Halldórsson, Derek Aguiar, Sorin Istrail	Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants.	Pacific Symposium on Biocomputing	2011	DBLP BibTeX RDF
17	Jin Zhang, Yufeng Wu	Haplotype Inference from Single Short Sequence Reads Using a Population Genealogical History Model.	Pacific Symposium on Biocomputing	2011	DBLP BibTeX RDF
17	Xin Li, Jing Li 0002	Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals.	RECOMB	2011	DBLP DOI BibTeX RDF
17	Guido H. Jajamovich, Xiaodong Wang 0001	Haplotype inference based on sparse dictionary selection.	ACSCC	2011	DBLP DOI BibTeX RDF
17	Serghei Mangul, Alexander Zelikovsky	Poster: Haplotype discovery from high-throughput sequencing data.	ICCABS	2011	DBLP DOI BibTeX RDF
17	Shawn T. O'Neil, Scott J. Emrich	Robust haplotype reconstruction of eukaryotic read data with Hapler.	ICCABS	2011	DBLP DOI BibTeX RDF
17	Jorge Duitama, Eun-Kyung Suk, Sabrina Schulz, Gayle McEwen, Thomas Huebsch, Margret R. Hoehe	Workshop: Bioinformatics pipeline for fosmid based molecular haplotype sequencing.	ICCABS	2011	DBLP DOI BibTeX RDF
17	Dong Do Duc, Huan Hoang Xuan	A Fast and Efficient Ant Colony Optimization for Haplotype Inference by Pure Parsimony.	KSE	2011	DBLP DOI BibTeX RDF
17	Wei-Bung Wang	Optimization Problems Concerning Tag SNP Selection, Haplotype Inference, and Detection of Horizontal Gene Transfers.		2011	RDF
17	Russell Schwartz	Theory and Algorithms for the Haplotype Assembly Problem.	Commun. Inf. Syst.	2010	DBLP DOI BibTeX RDF
17	Binh T. Nguyen 0002, Andreas Spillner 0001, Brent C. Emerson, Vincent Moulton	Distinguishing between hot-spots and melting-pots of genetic diversity using haplotype connectivity.	Algorithms Mol. Biol.	2010	DBLP DOI BibTeX RDF
17	Leonardo Tininini, Paola Bertolazzi, Alessandra Godi, Giuseppe Lancia	CollHaps: A Heuristic Approach to Haplotype Inference by Parsimony.	IEEE ACM Trans. Comput. Biol. Bioinform.	2010	DBLP DOI BibTeX RDF
17	Ryan Abo, Jathine Wong, Alun Thomas, Nicola J. Camp	Haplotype association analyses in resources of mixed structure using Monte Carlo testing.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
17	Yixuan Chen 0001, Xin Li, Jing Li 0002	A novel approach for haplotype-based association analysis using family data.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
17	Julie Hussin, Philippe Nadeau, Jean-François Lefebvre, Damian Labuda	Haplotype allelic classes for detecting ongoing positive selection.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
17	Anthony Y. C. Kuk, Jinfeng Xu, Yaning Yang	A study of the efficiency of pooling in haplotype estimation.	Bioinform.	2010	DBLP DOI BibTeX RDF
17	Dan He 0001, Arthur Choi, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin	Optimal algorithms for haplotype assembly from whole-genome sequence data.	Bioinform.	2010	DBLP DOI BibTeX RDF
17	Hans-Joachim Böckenhauer, Michal Forisek, Ján Oravec, Björn Steffen, Kathleen Steinhöfel, Monika Steinová	The Uniform Minimum-Ones 2SAT Problem and its Application to Haplotype Classification.	RAIRO Theor. Informatics Appl.	2010	DBLP DOI BibTeX RDF
17	Nadezhda Sazonova, Edward Sazonov, E. James Harner	Algorithm for haplotype resolution and block partitioning for partial XOR-genotype data.	J. Biomed. Informatics	2010	DBLP DOI BibTeX RDF
17	Arvind Gupta, Mohammad M. Karimi, Ján Manuch, Ladislav Stacho, Xiaohong Zhao	Haplotype Inferring via Galled-Tree Networks Is NP-Complete.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
17	Duong Dai Doan, Patricia A. Evans, Joseph D. Horton	A Near-Linear Time Algorithm for Haplotype Determination on General Pedigrees.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
17	Osvaldo Zagordi, Lukas Geyrhofer, Volker Roth 0001, Niko Beerenwinkel	Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
17	Ana Graça, Inês Lynce, João Marques-Silva 0001, Arlindo L. Oliveira	Haplotype Inference by Pure Parsimony: A Survey.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
17	Suzanne S. Sindi, Benjamin J. Raphael	Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
17	Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp	Haplotype Inference in Complex Pedigrees.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
17	Lan Liu 0001, Tao Jiang 0001	A linear-time algorithm for reconstructing zero-recombinant haplotype configuration on pedigrees without mating loops.	J. Comb. Optim.	2010	DBLP DOI BibTeX RDF
17	Xin Li, Yixuan Chen 0001, Jing Li 0002	Detecting Genome-wide Haplotype Polymorphism by Combined Use of Mendelian Constraints and Local Population Structure.	Pacific Symposium on Biocomputing	2010	DBLP BibTeX RDF
17	Michael Elberfeld, Till Tantau	Phylogeny- and Parsimony-Based Haplotype Inference with Constraints.	CPM	2010	DBLP DOI BibTeX RDF
17	Aurélie Favier, Jean-Michel Elsen, Simon de Givry, Andrés Legarra	Optimal haplotype reconstruction in half-sib families.	WCB@ICLP	2010	DBLP DOI BibTeX RDF
17	Filippo Geraci, Marco Pellegrini 0001	ReHap: An Integrated System for the Haplotype Assembly Problem from Shotgun Sequencing Data.	BIOINFORMATICS	2010	DBLP BibTeX RDF
17	Xinshun Xu	A semi-supervised style method for haplotype assembly problem based on MEC model.	ICNC	2010	DBLP DOI BibTeX RDF
17	Priyadarshini Lakshminarasimhan, Qi Liu, Robert E. Marmelstein, Mary Devito, Dongsheng Che	A Multi-Objective Evolutionary Approach for Haplotype Inference.	BIOCOMP	2010	DBLP BibTeX RDF
17	Duong Dai Doan, Patricia A. Evans	Fixed-Parameter Algorithm for Haplotype Inferences on General Pedigrees with Small Number of Sites.	WABI	2010	DBLP DOI BibTeX RDF
17	Yuri Pirola, Paola Bonizzoni, Tao Jiang 0001	Haplotype Inference on Pedigrees with Recombinations and Mutations.	WABI	2010	DBLP DOI BibTeX RDF
17	Rogério S. Rosa, Katia S. Guimarães	Insights on Haplotype Inference on Large Genotype Datasets.	BSB	2010	DBLP DOI BibTeX RDF
17	Yun Xu, Ying Wang, Xiaohui Yao, YuZhong Zhao	An EM method based on entropy LD block partition for haplotype inference.	BIC-TA	2010	DBLP DOI BibTeX RDF
17	Ana Graça, Inês Lynce, João Marques-Silva 0001, Arlindo L. Oliveira	Efficient and Accurate Haplotype Inference by Combining Parsimony and Pedigree Information.	ANB	2010	DBLP DOI BibTeX RDF
17	Linda Hartman, Ola Hössjer, Keith Humphreys	Utilizing identity-by-descent probabilities for genetic fine-mapping in population based samples, via spatial smoothing of haplotype effects.	Comput. Stat. Data Anal.	2009	DBLP DOI BibTeX RDF
17	Ling-Yun Wu, Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen	Self-organizing map approaches for the haplotype assembly problem.	Math. Comput. Simul.	2009	DBLP DOI BibTeX RDF
17	Jingli Wu, Jianxin Wang 0001, Jianer Chen	A practical algorithm based on particle swarm optimization for haplotype reconstruction.	Appl. Math. Comput.	2009	DBLP DOI BibTeX RDF