Search results for "WABI"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Poly H. da Silva, Marília D. V. Braga, Raphael Machado, Simone Dantas	DCJ-indel Distance with Distinct Operation Costs.	WABI	2012	DBLP DOI BibTeX RDF
1	Daniel Gregory Brown, Daniel Dexter	SibJoin: A Fast Heuristic for Half-Sibling Reconstruction.	WABI	2012	DBLP DOI BibTeX RDF
1	Philippe Rinaudo, Yann Ponty, Dominique Barth, Alain Denise	Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots - (Extended Abstract).	WABI	2012	DBLP DOI BibTeX RDF
1	Daniel Gregory Brown, Jakub Truszkowski	Fast Phylogenetic Tree Reconstruction Using Locality-Sensitive Hashing.	WABI	2012	DBLP DOI BibTeX RDF
1	Hosein Mohimani, Sangtae Kim, Pavel A. Pevzner	MS-DPR: An Algorithm for Computing Statistical Significance of Spectral Identifications of Non-linear Peptides.	WABI	2012	DBLP DOI BibTeX RDF
1	Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya	Succinct de Bruijn Graphs.	WABI	2012	DBLP DOI BibTeX RDF
1	Yun Zhu, Luay Nakhleh	Reconstructing the Evolution of Molecular Interaction Networks under the DMC and Link Dynamics Models.	WABI	2012	DBLP DOI BibTeX RDF
1	Benjamin J. Raphael, Jijun Tang (eds.)	Algorithms in Bioinformatics - 12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings	WABI	2012	DBLP DOI BibTeX RDF
1	Brad Shutters, Sudheer Vakati, David Fernández-Baca	Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state Characters.	WABI	2012	DBLP DOI BibTeX RDF
1	Yi Shi 0005, Xiaoping Liao, Xinhua Zhang, Guohui Lin, Dale Schuurmans	Sparse Learning Based Linear Coherent Bi-clustering.	WABI	2012	DBLP DOI BibTeX RDF
1	Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier	Preserving Inversion Phylogeny Reconstruction.	WABI	2012	DBLP DOI BibTeX RDF
1	Anthony J. Cox, Tobias Jakobi, Giovanna Rosone, Ole Schulz-Trieglaff	Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes.	WABI	2012	DBLP DOI BibTeX RDF
1	Markus J. Bauer, Anthony J. Cox, Giovanna Rosone, Marinella Sciortino	Lightweight LCP Construction for Next-Generation Sequencing Datasets.	WABI	2012	DBLP DOI BibTeX RDF
1	Yasuo Tabei	Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches.	WABI	2012	DBLP DOI BibTeX RDF
1	Bjarni V. Halldórsson, Dima Blokh, Roded Sharan	Estimating Population Size via Line Graph Reconstruction.	WABI	2012	DBLP DOI BibTeX RDF
1	Birte Kehr, Knut Reinert, Aaron E. Darling	Hidden Breakpoints in Genome Alignments.	WABI	2012	DBLP DOI BibTeX RDF
1	Xuefeng Cui, Shuai Cheng Li 0001, Dongbo Bu, Babak Alipanahi Ramandi, Ming Li 0001	How Accurately Can We Model Protein Structures with Dihedral Angles?	WABI	2012	DBLP DOI BibTeX RDF
1	Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk	An Optimal Reconciliation Algorithm for Gene Trees with Polytomies.	WABI	2012	DBLP DOI BibTeX RDF
1	Shay Houri, Roded Sharan	Sign Assignment Problems on Protein Networks.	WABI	2012	DBLP DOI BibTeX RDF
1	Jianrong Dong, David Fernández-Baca	Constructing Large Conservative Supertrees.	WABI	2011	DBLP DOI BibTeX RDF
1	Teresa M. Przytycka, Marie-France Sagot (eds.)	Algorithms in Bioinformatics - 11th International Workshop, WABI 2011, Saarbrücken, Germany, September 5-7, 2011. Proceedings	WABI	2011	DBLP DOI BibTeX RDF
1	Jakub Kovác, Brona Brejová, Tomás Vinar	A Practical Algorithm for Ancestral Rearrangement Reconstruction.	WABI	2011	DBLP DOI BibTeX RDF
1	Yann Ponty, Cédric Saule	A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms.	WABI	2011	DBLP DOI BibTeX RDF
1	Jouni Sirén, Niko Välimäki, Veli Mäkinen	Indexing Finite Language Representation of Population Genotypes.	WABI	2011	DBLP DOI BibTeX RDF
1	Chunfang Zheng, Krister M. Swenson, Eric Lyons 0002, David Sankoff	OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations.	WABI	2011	DBLP DOI BibTeX RDF
1	Daniel G. Brown 0001, Jakub Truszkowski	Towards a Practical O(n logn) Phylogeny Algorithm.	WABI	2011	DBLP DOI BibTeX RDF
1	Andrew Wei Xu, Bernard M. E. Moret	GASTS: Parsimony Scoring under Rearrangements.	WABI	2011	DBLP DOI BibTeX RDF
1	Vincent Noel, Sergei Vakulenko, Ovidiu Radulescu	Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation.	WABI	2011	DBLP DOI BibTeX RDF
1	Joseph Andrew Whitney, Judice L. Y. Koh, Michael Costanzo, Grant Brown, Charles Boone, Michael Brudno	Clustering with Overlap for Genetic Interaction Networks via Local Search Optimization.	WABI	2011	DBLP DOI BibTeX RDF
1	Brona Brejová, Michal Burger, Tomás Vinar	Automated Segmentation of DNA Sequences with Complex Evolutionary Histories.	WABI	2011	DBLP DOI BibTeX RDF
1	Hang Xiao, Melvin Zhang, Axel Mosig, Hon Wai Leong	Dynamic Programming Algorithms for Efficiently Computing Cosegmentations between Biological Images.	WABI	2011	DBLP DOI BibTeX RDF
1	Andrea Doroftei, Nadia El-Mabrouk	Removing Noise from Gene Trees.	WABI	2011	DBLP DOI BibTeX RDF
1	Kristian Stevens, Bonnie Kirkpatrick	Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State Data with Missing Values.	WABI	2011	DBLP DOI BibTeX RDF
1	Stefan Canzar, Mohammed El-Kebir	A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding.	WABI	2011	DBLP DOI BibTeX RDF
1	Rayan Chikhi, Dominique Lavenier	Localized Genome Assembly from Reads to Scaffolds: Practical Traversal of the Paired String Graph.	WABI	2011	DBLP DOI BibTeX RDF
1	Daniel Doerr, Ilan Gronau, Shlomo Moran, Irad Yavneh	Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions - (Extended Abstract).	WABI	2011	DBLP DOI BibTeX RDF
1	Noël Malod-Dognin, Mathilde Le Boudic-Jamin, Pritish Kamath, Rumen Andonov	Using Dominances for Solving the Protein Family Identification Problem.	WABI	2011	DBLP DOI BibTeX RDF
1	Md Pavel Mahmud, Alexander Schliep	Speeding Up Bayesian HMM by the Four Russians Method.	WABI	2011	DBLP DOI BibTeX RDF
1	Fabio Vandin, Eli Upfal, Benjamin J. Raphael	Finding Driver Pathways in Cancer: Models and Algorithms.	WABI	2011	DBLP DOI BibTeX RDF
1	Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford	Parsimonious Reconstruction of Network Evolution.	WABI	2011	DBLP DOI BibTeX RDF
1	Jonathan Qiang Jiang	Learning Protein Functions from Bi-relational Graph of Proteins and Function Annotations.	WABI	2011	DBLP DOI BibTeX RDF
1	Kouichi Kimura, Asako Koike, Kenta Nakai	Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read Mapping.	WABI	2011	DBLP DOI BibTeX RDF
1	Michel Habib, Thu-Hien To	On a Conjecture about Compatibility of Multi-states Characters.	WABI	2011	DBLP DOI BibTeX RDF
1	Rob Gysel, Fumei Lam, Dan Gusfield	Constructing Perfect Phylogenies and Proper Triangulations for Three-State Characters.	WABI	2011	DBLP DOI BibTeX RDF
1	Serghei Mangul, Irina Astrovskaya, Marius Nicolae, Bassam Tork, Ion I. Mandoiu, Alexander Zelikovsky	Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data.	WABI	2011	DBLP DOI BibTeX RDF
1	Hans-Michael Kaltenbach, Simona Constantinescu, Justin Feigelman, Jörg Stelling	Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems.	WABI	2011	DBLP DOI BibTeX RDF
1	Mohamed Elati, Rim Fekih, Rémy Nicolle, Ivan Junier, Joan Hérisson, François Képès	Boosting Binding Sites Prediction Using Gene's Positions.	WABI	2011	DBLP DOI BibTeX RDF
1	Olga Tanaseichuk, James Borneman, Tao Jiang 0001	Separating Metagenomic Short Reads into Genomes via Clustering - (Extended Abstract).	WABI	2011	DBLP DOI BibTeX RDF
1	Yu Lin 0001, Vaibhav Rajan, Bernard M. E. Moret	Bootstrapping Phylogenies Inferred from Rearrangement Data.	WABI	2011	DBLP DOI BibTeX RDF
1	Elad Donsky, Haim J. Wolfson	PepCrawler: A Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract).	WABI	2011	DBLP DOI BibTeX RDF
1	Raghavendra Hosur, Rohit Singh 0001, Bonnie Berger	Sparse Estimation for Structural Variability.	WABI	2010	DBLP DOI BibTeX RDF
1	Pedro Manuel Pinto Ribeiro, Fernando M. A. Silva	Efficient Subgraph Frequency Estimation with G-Tries.	WABI	2010	DBLP DOI BibTeX RDF
1	Louxin Zhang, Yun Cui	An Efficient Method for DNA-Based Species Assignment via Gene Tree and Species Tree Reconciliation.	WABI	2010	DBLP DOI BibTeX RDF
1	Duong Dai Doan, Patricia A. Evans	Fixed-Parameter Algorithm for Haplotype Inferences on General Pedigrees with Small Number of Sites.	WABI	2010	DBLP DOI BibTeX RDF
1	Kristian Stevens, Dan Gusfield	Reducing Multi-state to Binary Perfect Phylogeny with Applications to Missing, Removable, Inserted, and Deleted Data.	WABI	2010	DBLP DOI BibTeX RDF
1	Yelena Frid, Dan Gusfield	A Worst-Case and Practical Speedup for the RNA Co-folding Problem Using the Four-Russians Idea.	WABI	2010	DBLP DOI BibTeX RDF
1	Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alexander Zelikovsky	Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data.	WABI	2010	DBLP DOI BibTeX RDF
1	Iftah Gamzu, Danny Segev, Roded Sharan	Improved Orientations of Physical Networks.	WABI	2010	DBLP DOI BibTeX RDF
1	Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk	Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss.	WABI	2010	DBLP DOI BibTeX RDF
1	Tobias Marschall, Sven Rahmann	Speeding Up Exact Motif Discovery by Bounding the Expected Clump Size.	WABI	2010	DBLP DOI BibTeX RDF
1	Bonnie Kirkpatrick	Haplotypes versus Genotypes on Pedigrees.	WABI	2010	DBLP DOI BibTeX RDF
1	M. Shel Swenson, Rahul Suri, C. Randal Linder, Tandy J. Warnow	An Experimental Study of Quartets MaxCut and Other Supertree Methods.	WABI	2010	DBLP DOI BibTeX RDF
1	Shay Zakov, Dekel Tsur, Michal Ziv-Ukelson	Reducing the Worst Case Running Times of a Family of RNA and CFG Problems, Using Valiant's Approach.	WABI	2010	DBLP DOI BibTeX RDF
1	Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix	Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms.	WABI	2010	DBLP DOI BibTeX RDF
1	Krister M. Swenson, Ghada Badr, David Sankoff	Listing All Sorting Reversals in Quadratic Time.	WABI	2010	DBLP DOI BibTeX RDF
1	Daniel G. Brown 0001, Tanya Y. Berger-Wolf	Discovering Kinship through Small Subsets.	WABI	2010	DBLP DOI BibTeX RDF
1	Arun Siddharth Konagurthu, Lloyd Allison, Thomas C. Conway, Bryan Beresford-Smith, Justin Zobel	Design of an Efficient Out-of-Core Read Alignment Algorithm.	WABI	2010	DBLP DOI BibTeX RDF
1	Thomas Greve Kristensen, Christian N. S. Pedersen	Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors.	WABI	2010	DBLP DOI BibTeX RDF
1	Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp	Sparsification of RNA Structure Prediction Including Pseudoknots.	WABI	2010	DBLP DOI BibTeX RDF
1	Corinna Theis, Stefan Janssen, Robert Giegerich	Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs.	WABI	2010	DBLP DOI BibTeX RDF
1	Franziska Hufsky, Léon Kuchenbecker, Katharina Jahn 0001, Jens Stoye, Sebastian Böcker	Swiftly Computing Center Strings.	WABI	2010	DBLP DOI BibTeX RDF
1	Ariful Azad, Johannes Langguth, Youhan Fang, Yuan (Alan) Qi, Alex Pothen	Identifying Rare Cell Populations in Comparative Flow Cytometry.	WABI	2010	DBLP DOI BibTeX RDF
1	Dan He 0001, Eleazar Eskin	Effective Algorithms for Fusion Gene Detection.	WABI	2010	DBLP DOI BibTeX RDF
1	Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp	Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties.	WABI	2010	DBLP DOI BibTeX RDF
1	Chen-Hsiang Yeang	Quantifying the Strength of Natural Selection of a Motif Sequence.	WABI	2010	DBLP DOI BibTeX RDF
1	Marília D. V. Braga, Eyla Willing, Jens Stoye	Genomic Distance with DCJ and Indels.	WABI	2010	DBLP DOI BibTeX RDF
1	Yuri Pirola, Paola Bonizzoni, Tao Jiang 0001	Haplotype Inference on Pedigrees with Recombinations and Mutations.	WABI	2010	DBLP DOI BibTeX RDF
1	Jesper Jansson 0001, Richard S. Lemence, Andrzej Lingas	The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree.	WABI	2010	DBLP DOI BibTeX RDF
1	Vincent Moulton, Mona Singh 0001 (eds.)	Algorithms in Bioinformatics, 10th International Workshop, WABI 2010, Liverpool, UK, September 6-8, 2010. Proceedings	WABI	2010	DBLP DOI BibTeX RDF
1	Miklós Csürös, Szilveszter Juhos, Attila Bérces	Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA.	WABI	2010	DBLP DOI BibTeX RDF
1	Magnus Bordewich, Radu Mihaescu	Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based on Balanced Minimum Evolution.	WABI	2010	DBLP DOI BibTeX RDF
1	Fadi Towfic, M. Heather West Greenlee, Vasant G. Honavar	Aligning Biomolecular Networks Using Modular Graph Kernels.	WABI	2009	DBLP DOI BibTeX RDF
1	Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara	A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures.	WABI	2009	DBLP DOI BibTeX RDF
1	Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu	Structural Alignment of RNA with Complex Pseudoknot Structure.	WABI	2009	DBLP DOI BibTeX RDF	pseudoknots, Structural alignment, non-coding RNA
1	Tetsuo Shibuya, Jesper Jansson 0001, Kunihiko Sadakane	Linear-Time Protein 3-D Structure Searching with Insertions and Deletions.	WABI	2009	DBLP DOI BibTeX RDF
1	Xiuwei Zhang, Bernard M. E. Moret	Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models.	WABI	2009	DBLP DOI BibTeX RDF
1	Matthew Hansen, Logan Everett, Larry N. Singh, Sridhar Hannenhalli	Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction.	WABI	2009	DBLP DOI BibTeX RDF
1	Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp	biRNA: Fast RNA-RNA Binding Sites Prediction.	WABI	2009	DBLP DOI BibTeX RDF
1	Sebastian Böcker, Florian Rasche, Tamara Steijger	Annotating Fragmentation Patterns.	WABI	2009	DBLP DOI BibTeX RDF
1	Pedro Feijão, João Meidanis	SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy.	WABI	2009	DBLP DOI BibTeX RDF
1	Pasi Rastas	A General Framework for Local Pairwise Alignment Statistics with Gaps.	WABI	2009	DBLP DOI BibTeX RDF
1	Roberto Grossi, Andrea Pietracaprina, Nadia Pisanti, Geppino Pucci, Eli Upfal, Fabio Vandin	MADMX: A Novel Strategy for Maximal Dense Motif Extraction.	WABI	2009	DBLP DOI BibTeX RDF
1	M. Shel Swenson, François Barbançon, C. Randal Linder, Tandy J. Warnow	A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen.	WABI	2009	DBLP DOI BibTeX RDF
1	Fumei Lam, Dan Gusfield, Srinath Sridhar 0001	Generalizing the Four Gamete Condition and Splits Equivalence Theorem: Perfect Phylogeny on Three State Characters.	WABI	2009	DBLP DOI BibTeX RDF
1	Jakub Kovác, Tomás Vinar, Brona Brejová	Predicting Gene Structures from Multiple RT-PCR Tests.	WABI	2009	DBLP DOI BibTeX RDF	RT-PCR, splicing graph, dynamic programming, NP-completeness, gene finding
1	Yelena Frid, Dan Gusfield	A Simple, Practical and Complete O(\fracn3 logn)O(\frac{n^3}{ \log n})-Time Algorithm for RNA Folding Using the Four-Russians Speedup.	WABI	2009	DBLP DOI BibTeX RDF
1	Chris Whidden, Norbert Zeh	A Unifying View on Approximation and FPT of Agreement Forests.	WABI	2009	DBLP DOI BibTeX RDF
1	Daniel DeBlasio, Jocelyne Bruand, Shaojie Zhang	PMFastR: A New Approach to Multiple RNA Structure Alignment.	WABI	2009	DBLP DOI BibTeX RDF	multiple RNA alignment, RNA sequence-structure alignment, iterative alignment
1	Marta Gîrdea, Laurent Noé, Gregory Kucherov	Back-Translation for Discovering Distant Protein Homologies.	WABI	2009	DBLP DOI BibTeX RDF
1	Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester	Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks.	WABI	2009	DBLP DOI BibTeX RDF	Biomolecular Network Motifs, Evolutionary Systems Biology, Color Coding, Protein-Protein Interaction Networks

Publications at "WABI"( http://dblp.L3S.de/Venues/WABI )