Search results for "homologous"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
19	Nicole Stange, Hans J. Gross, Hildburg Beier	A nuclear Nicotiana DNA sequence homologous to the 5' half of tRNATyr may have derived from reverse transcription of a pre-tRNA splicing intermediate.	Nucleic Acids Res.	1987	DBLP DOI BibTeX RDF
19	Peter A. Stockwell, G. B. Petersen	HOMED: a homologous sequence editor.	Comput. Appl. Biosci.	1987	DBLP DOI BibTeX RDF
19	Hisayuki Nomiyama, Teruhisa Tsuzuki, Shoji Wakasugi, Makoto Fukuda, Kazunori Shimada	Interruption of a human nuclear sequence homologous to mitochondrial DNA by a member of the KpnI 1.8 kb family.	Nucleic Acids Res.	1984	DBLP DOI BibTeX RDF
19	Verner Paetkau	A new rule for analyzing homologous coding sequences in DNA.	Nucleic Acids Res.	1984	DBLP DOI BibTeX RDF
12	Ana Arribas-Gil, Dirk Metzler, Jean-Louis Plouhinec	Statistical Alignment with a Sequence Evolution Model Allowing Rate Heterogeneity along the Sequence.	IEEE ACM Trans. Comput. Biol. Bioinform.	2009	DBLP DOI BibTeX RDF	mathematics and statistics, sequence evolution, Markov processes, probabilistic algorithms, biology and genetics
12	Gang Fang, Jin Xu, Shemin Zhang	Performing DNA computation with RecA-mediated triple-stranded DNA structure.	Nat. Comput.	2009	DBLP DOI BibTeX RDF	RecA protein, Satisfiability problem (SAT), Triple-stranded DNA structure, DNA computing, NP-complete problems
12	Ezzeddine Zagrouba, Walid Barhoumi, Slim Amri	An efficient image-mosaicing method based on multifeature matching.	Mach. Vis. Appl.	2009	DBLP DOI BibTeX RDF	Harris points, Correlation scores, Mosaic, Regions matching, Reconstruction error
12	Minghui Jiang 0001	Inapproximability of Maximal Strip Recovery.	ISAAC	2009	DBLP DOI BibTeX RDF
12	Rui Wang 0010, XiaoFeng Wang 0001, Zhou Li 0001, Haixu Tang, Michael K. Reiter, Zheng Dong	Privacy-preserving genomic computation through program specialization.	CCS	2009	DBLP DOI BibTeX RDF	human genome, privacy-preserving computation, dynamic programming, symbolic execution, secure multi-party computation, program specialization
12	Wei Zheng 0009, Karl E. Griswold, Chris Bailey-Kellogg	Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination.	RECOMB	2009	DBLP DOI BibTeX RDF
12	Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph	Cross Species Expression Analysis of Innate Immune Response.	RECOMB	2009	DBLP DOI BibTeX RDF
12	Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald	NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments.	ISCIS	2009	DBLP DOI BibTeX RDF
12	Valentina Sulimova, Vadim Mottl, Boris G. Mirkin, Ilya B. Muchnik, Casimir A. Kulikowski	A Class of Evolution-Based Kernels for Protein Homology Analysis: A Generalization of the PAM Model.	ISBRA	2009	DBLP DOI BibTeX RDF	Protein homology analysis, amino acid sequence alignment, evolutionary kernel function, kernel-derived clusters, evolution modeling
12	Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee	Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease.	IPMI	2009	DBLP DOI BibTeX RDF
12	Yonggang Shi, Jonathan H. Morra, Paul M. Thompson, Arthur W. Toga	Inverse-Consistent Surface Mapping with Laplace-Beltrami Eigen-Features.	IPMI	2009	DBLP DOI BibTeX RDF
12	Mahzad Kalantari, Franck Jung, Jean-Pierre Guédon, Nicolas Paparoditis	The Five Points Pose Problem: A New and Accurate Solution Adapted to Any Geometric Configuration.	PSIVT	2009	DBLP DOI BibTeX RDF	Five points pose problem, polynomial direct resolution, Gröbner bases, relative orientation
12	Man-Wai Mak, Jian Guo 0002, Sun-Yuan Kung	PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	profile alignment, Mercer condition, Support Vector Machines, Kernel Methods, Subcellular localization
12	Loredana M. Genovese, Filippo Geraci, Marco Pellegrini 0001	SpeedHap: An Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage.	IEEE ACM Trans. Comput. Biol. Bioinform.	2008	DBLP DOI BibTeX RDF	Algorithms, Biology and genetics
12	Vijayaraj Nagarajan, Mohamed O. Elasri	Case Study: Structure and Function Prediction of a Protein with No Functionally Characterized Homolog.	Computational Intelligence in Biomedicine and Bioinformatics	2008	DBLP DOI BibTeX RDF
12	Antonio J. Lara, Guillermo Pérez-Trabado, David P. Villalobos, Sara Díaz-Moreno, Francisco R. Cantón, M. Gonzalo Claros	A Web Tool to Discover Full-Length Sequences - Full-Lengther.	Innovations in Hybrid Intelligent Systems	2008	DBLP DOI BibTeX RDF
12	Roberto C. Cavalcante Vieira, Creto Augusto Vidal, Joaquim B. Cavalcante Neto	A biologically inspired generation of virtual characters.	SAC	2008	DBLP DOI BibTeX RDF	genetic inheritance, reproductive simulation, virtual characters modeling, mesh generation
12	Jing Wan, Aaron Carass, Susan M. Resnick, Jerry L. Prince	Automated reliable labeling of the cortical surface.	ISBI	2008	DBLP DOI BibTeX RDF
12	Guillaume Damiand, Samuel Peltier, Laurent Fuchs	Computing Homology Generators for Volumes Using Minimal Generalized Maps.	IWCIA	2008	DBLP DOI BibTeX RDF	homology generators, generalized maps, topological features
12	Cao D. Nguyen, Katheleen J. Gardiner, Duong Nguyen, Krzysztof J. Cios	Prediction of Protein Functions from Protein Interaction Networks: A Naïve Bayes Approach.	PRICAI	2008	DBLP DOI BibTeX RDF	Supplementary Materials www.egr.vcu.edu/cs/dmb/Bayesian
12	Fahad Saeed, Ashfaq A. Khokhar	Sample-Align-D: A high performance Multiple Sequence Alignment system using phylogenetic sampling and domain decomposition.	IPDPS	2008	DBLP DOI BibTeX RDF
12	Daniel Kahn, Clément Rezvoy, Frédéric Vivien	Parallel Large Scale Inference of Protein Domain Families.	ICPADS	2008	DBLP DOI BibTeX RDF
12	Bin Zhang, Feiyue Ye	Semantics Based Multi-XML Query Algorithm.	CSSE (4)	2008	DBLP DOI BibTeX RDF
12	Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Xavier Pennec, Chenyang Xu 0001, Nicholas Ayache	Registration of 4D Time-Series of Cardiac Images with Multichannel Diffeomorphic Demons.	MICCAI (2)	2008	DBLP DOI BibTeX RDF
12	Dmitry Korkin, Qingguo Wang, Yi Shang	An Efficient Parallel Algorithm for the Multiple Longest Common Subsequence (MLCS) Problem.	ICPP	2008	DBLP DOI BibTeX RDF
12	Nicholas A. Lord, Jeffrey Ho, Baba C. Vemuri, Stephan J. Eisenschenk	Simultaneous Registration and Parcellation of Bilateral Hippocampal Surface Pairs for Local Asymmetry Quantification.	IEEE Trans. Medical Imaging	2007	DBLP DOI BibTeX RDF
12	Jinmiao Chen, Narendra S. Chaudhari	Cascaded Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF
12	Shahar Michal, Tor Ivry, Omer Cohen, Moshe Sipper, Danny Barash	Finding a Common Motif of RNA Sequences Using Genetic Programming: The GeRNAMo System.	IEEE ACM Trans. Comput. Biol. Bioinform.	2007	DBLP DOI BibTeX RDF
12	Ydo Wexler, Dan Geiger	Variational Upper Bounds for Probabilistic Phylogenetic Models.	RECOMB	2007	DBLP DOI BibTeX RDF
12	Ken D. Nguyen, Yi Pan 0001	A Reliable Metric for Quantifying Multiple Sequence Alignment.	BIBE	2007	DBLP DOI BibTeX RDF
12	Fa Zhang 0001, Zhaoyun Ma, Zhiyong Liu 0002, Bo Yuan	Using Domain-Based Structural Ensemble to Improve Structure Modeling.	BIBE	2007	DBLP DOI BibTeX RDF
12	Mario Graff, Riccardo Poli, Alberto Moraglio	Linear selection.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
12	Xiaoyong Fang, Zhigang Luo, Zhenghua Wang, Bo Yuan, Jinlong Shi	A Seed-Based Method for Predicting Common Secondary Structures in Unaligned RNA Sequences.	MDAI	2007	DBLP DOI BibTeX RDF	seed-based, unaligned RNA sequences, RNA secondary structure
12	Hong Cao, Lidan Chen, Jun Yang, Shuji Gong, Hao Zhou, Sheng-He Huang	CglE's Role in Meningitic E. coli K1 Infection and Energy Metabolism Defined by Bioinformatic and Molecular Characterization.	FBIT	2007	DBLP DOI BibTeX RDF
12	Giulio Pavesi, Federico Zambelli	Prediction of over Represented Transcription Factor Binding Sites in Co-regulated Genes Using Whole Genome Matching Statistics.	WILF	2007	DBLP DOI BibTeX RDF
12	Massimo La Rosa, Giuseppe Di Fatta, Salvatore Gaglio, Giovanni M. Giammanco, Riccardo Rizzo, Alfonso Urso	Soft Topographic Map for Clustering and Classification of Bacteria.	IDA	2007	DBLP DOI BibTeX RDF
12	Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato	Stem Kernels for RNA Sequence Analyses.	BIRD	2007	DBLP DOI BibTeX RDF	stem kernel, SVM, secondary structure, RNA, string kernel
12	Jizhen Zhao, Dongsheng Che, Liming Cai	Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information.	ISBRA	2007	DBLP DOI BibTeX RDF	Pathway prediction, protein-DNA interaction, operon, independent set, clique, tree decomposition
12	Guangyu Zou, Jing Hua 0001, Ming Dong 0001	Integrative Information Visualization of Multimodality Neuroimaging Data.	PG	2007	DBLP DOI BibTeX RDF
12	Rubén Posada-Gómez, Giner Alor-Hernández, Mario Alberto Garcia Martinez, Albino Martínez-Sibaja	Non-invasive tumor localization by 3D registration of range sensor and computer tomography images.	ENC	2007	DBLP DOI BibTeX RDF
12	Guangyu Zou, Jing Hua 0001, Otto Muzik	Non-rigid Surface Registration Using Spherical Thin-Plate Splines.	MICCAI (1)	2007	DBLP DOI BibTeX RDF
12	Loredana M. Genovese, Filippo Geraci, Marco Pellegrini 0001	A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage.	WABI	2007	DBLP DOI BibTeX RDF
12	Xiaoyong Fang, Zhigang Luo, Bo Yuan, Zhenghua Wang, Fan Ding	Constructing Structural Alignment of RNA Sequences by Detecting and Assessing Conserved Stems.	LSMS (2)	2007	DBLP DOI BibTeX RDF
12	Frank M. Candocia, Daniel Mandarino	Change Detection on Comparametrically Related Images.	ICIP	2006	DBLP DOI BibTeX RDF
12	Mitsuo Murata	Application of PVM to Protein Homology Search.	PVM/MPI	2006	DBLP DOI BibTeX RDF
12	Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki	Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.	RECOMB	2006	DBLP DOI BibTeX RDF
12	Nan Song, R. D. Sedgewick, Dannie Durand	Domain Architecture in Homolog Identification.	Comparative Genomics	2006	DBLP DOI BibTeX RDF
12	Sagi Snir, Lior Pachter	Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes.	RECOMB	2006	DBLP DOI BibTeX RDF
12	Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna	Structural Alignment of Pseudoknotted RNA.	RECOMB	2006	DBLP DOI BibTeX RDF
12	Roger A. Craig, Li Liao	Protein classification using transductive learning on phylogenetic profiles.	SAC	2006	DBLP DOI BibTeX RDF
12	Shu Ju Hsieh, Chun-Yuan Lin, Ning Han Liu, Chuan Yi Tang	Comparative Gene Prediction Based on Gene Structure Conservation.	PRIB	2006	DBLP DOI BibTeX RDF
12	Zikai Wu, Yong Wang 0001, En-Min Feng, Jin-Cheng Zhao	Protein Structure Comparison Based on a Measure of Information Discrepancy.	TAMC	2006	DBLP DOI BibTeX RDF
12	Ken-ichi Makino, Hideyasu Hirano	Design of RT-PCR Primers Based on Informational Method.	ICICIC (3)	2006	DBLP DOI BibTeX RDF
12	Jeffrey Gerard, Hailong Cai, Jun Wang 0001	Alliatrust: A Trustable Reputation Management Scheme for Unstructured P2P Systems.	GPC	2006	DBLP DOI BibTeX RDF
12	Lucian Ilie, Roberto Solis-Oba	Gene Assembly Algorithms for Ciliates.	DNA	2006	DBLP DOI BibTeX RDF	stichotrichs, gene assembly, dlad-first greedy strategy, algorithm, ciliates
12	Fa Zhang 0001, Lin Xu, Bo Yuan	A method to improve structural modeling based on conserved domain clusters.	IPDPS	2006	DBLP DOI BibTeX RDF
12	Xiaoxu Han	Multispecies Gene Entropy Estimation, a Data Mining Approach.	ICDM	2006	DBLP DOI BibTeX RDF
12	Bing Sun, Jacob T. Schwartz, Ofer H. Gill, Bud Mishra	COMBAT: Search Rapidly for Highly Similar Protein-Coding Sequences Using Bipartite Graph Matching.	International Conference on Computational Science (2)	2006	DBLP DOI BibTeX RDF
12	Michael Defoin-Platel, Manuel Clergue	Monitoring Genetic Variations in Variable Length Evolutionary Algorithms.	HIS	2006	DBLP DOI BibTeX RDF
12	Tomasz Woloszynski, Marek Kurzynski	Application of Combining Classifiers Using Dynamic Weights to the Protein Secondary Structure Prediction - Comparative Analysis of Fusion Methods.	ISBMDA	2006	DBLP DOI BibTeX RDF
12	Lok Ming Lui, Yalin Wang 0001, Tony F. Chan, Paul M. Thompson	A Landmark-Based Brain Conformal Parametrization with Automatic Landmark Tracking Technique.	MICCAI (2)	2006	DBLP DOI BibTeX RDF
12	Leszek Gasieniec, Cindy Y. Li, Paul Sant, Prudence W. H. Wong	Efficient Probe Selection in Microarray Design.	CIBCB	2006	DBLP DOI BibTeX RDF
12	Joseph I. Landman, Joydeep Ray, John Paul Walters	Accelerating HMMer searches on Opteron processors with minimally invasive recoding.	AINA (2)	2006	DBLP DOI BibTeX RDF
12	Kenichi Wakabayashi, Masayuki Yamamura	A Design for Cellular Evolutionary Computation by using Bacteria.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	genetic algorithm, evolutionary computation, bacteria
12	Dan Gusfield, Vikas Bansal 0001	A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters.	RECOMB	2005	DBLP DOI BibTeX RDF
12	Yuheng Li, Mario Lauria, Ralf Bundschuh	Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches.	BIBE	2005	DBLP DOI BibTeX RDF	PSI-BLAST, suboptimal alignment, sequence alignment, hybrid algorithm, forward-backward algorithm
12	Riccardo Poli, Christopher R. Stephens	Theoretical analysis of generalised recombination.	Congress on Evolutionary Computation	2005	DBLP DOI BibTeX RDF
12	Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson	On the Complexity of Sparse Exon Assembly.	CPM	2005	DBLP DOI BibTeX RDF
12	Mario Coppo, Federico Cozzi, Mariangiola Dezani-Ciancaglini, Elio Giovannetti, Rosario Pugliese	A Mobility Calculus with Local and Dependent Types.	Processes, Terms and Cycles	2005	DBLP DOI BibTeX RDF
12	Lukasz A. Kurgan, Leila Homaeian	Prediction of Secondary Protein Structure Content from Primary Sequence Alone - A Feature Selection Based Approach.	MLDM	2005	DBLP DOI BibTeX RDF
12	Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Chin-Lin Peng, Shiang-Heng Chen, Chun-Yi Wong, Meng-Yuan Chou, Tze-Chang Shiao	SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results.	CSB Workshops	2005	DBLP DOI BibTeX RDF
12	Noppadon Khiripet	Bacterial Whole Genome Phylogeny Using Proteome Comparison and Optimal Reversal Distance.	CSB Workshops	2005	DBLP DOI BibTeX RDF
12	A-Ning Du, Binxing Fang, Bin Li	A Biased Support Vector Machine Approach to Web Filtering.	ICAPR (1)	2005	DBLP DOI BibTeX RDF
12	Jaume Amores, Nicu Sebe, Petia Radeva	Fast Spatial Pattern Discovery Integrating Boosting with Constellations of Contextual Descriptors.	CVPR (2)	2005	DBLP DOI BibTeX RDF
12	Niranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman	Evaluation of Fuzzy Measures in Profile Hidden Markov Models for Protein Sequences.	ISBMDA	2005	DBLP DOI BibTeX RDF
12	Jeffrey Huang, Shijun Li	Mining p53 Binding Sites Using Profile Hidden Markov Model.	ITCC (1)	2005	DBLP DOI BibTeX RDF
12	Yi-Lun Pan, Yuehching Lee, Fan Wu	Job Scheduling of Savant for Grid Computing on RFID EPC Network.	IEEE SCC	2005	DBLP DOI BibTeX RDF
12	Christophe Foussette, Daniel Hakenjos, Martin Scholz	KDD-Cup 2004: protein homology task.	SIGKDD Explor.	2004	DBLP DOI BibTeX RDF
12	Markus Bauer 0001, Gunnar W. Klau	Structural Alignment of Two RNA Sequences with Lagrangian Relaxation.	ISAAC	2004	DBLP DOI BibTeX RDF
12	Andrew Fire	RNAi, genome ultrastructure, and other unexpected tales from the analysis of genetic silencing.	RECOMB	2004	DBLP DOI BibTeX RDF
12	David Sankoff, Phil Trinh	Chromosomal breakpoint re-use in the inference of genome sequence rearrangement.	RECOMB	2004	DBLP DOI BibTeX RDF	Hannenhalli-Pevzner algorithm, synteny blocks, evolution, inversion, comparative genomics, breakpoints, rearrangements
12	Jeong-Hyeon Choi, Kwangmin Choi, Hwan-Gue Cho, Sun Kim	Multiple Genome Alignment by Clustering Pairwise Matches.	Comparative Genomics	2004	DBLP DOI BibTeX RDF
12	Rose Hoberman, David Sankoff, Dannie Durand	The Statistical Significance of Max-Gap Clusters.	Comparative Genomics	2004	DBLP DOI BibTeX RDF
12	Gregory Kucherov, Laurent Noé, Yann Ponty	Estimating Seed Sensitivity on Homogeneous Alignments.	BIBE	2004	DBLP DOI BibTeX RDF
12	I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang 0001, Kun-Mao Chao	Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds.	BIBE	2004	DBLP DOI BibTeX RDF	Sequence Alignment, Database Search
12	Scott Mann, Yi-Ping Phoebe Chen, Luke Eaton	A Computational Framework for Nucleic Acid Sub-Sequence Identification.	BIBE	2004	DBLP DOI BibTeX RDF
12	Kwok Pui Choi, Fanfan Zeng, Louxin Zhang	Good Spaced Seeds For Homology Search.	BIBE	2004	DBLP DOI BibTeX RDF
12	Jinbo Xu, Daniel G. Brown 0001, Ming Li 0001, Bin Ma 0002	Optimizing Multiple Spaced Seeds for Homology Search.	CPM	2004	DBLP DOI BibTeX RDF
12	Ali Al-Shahib, Chao He, Aik Choon Tan, Mark A. Girolami, David R. Gilbert	An Assessment of Feature Relevance in Predicting Protein Function from Sequence.	IDEAL	2004	DBLP DOI BibTeX RDF
12	Zhonghua Cheng, Qi Gao, Wenyuan Song, Zhuangzhi Han	The maintenance cost model of the item with compound failure modes.	ICARCV	2004	DBLP DOI BibTeX RDF
12	Kenichi Wakabayashi, Masayuki Yamamura	A Design for Cellular Evolutionary Computation by Using Bacteria.	DNA	2004	DBLP DOI BibTeX RDF
12	Emad Y. Ramadan, Arijit Tarafdar, Alex Pothen	A Hypergraph Model for the Yeast Protein Complex Network.	IPDPS	2004	DBLP DOI BibTeX RDF	protein complex network, power-law network, graph core, hypergraph, vertex cover, small-world network
12	Daniel G. Brown 0001, Alexander K. Hudek	New Algorithms for Multiple DNA Sequence Alignment.	WABI	2004	DBLP DOI BibTeX RDF
12	Stanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira	ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences.	WABI	2004	DBLP DOI BibTeX RDF
12	Debasis Mitra 0003, Michael Smith 0021	Digital Signal Processing in Predicting Secondary Structures of Proteins.	IEA/AIE	2004	DBLP DOI BibTeX RDF
12	Arvind K. Bansal, Christopher Woolverton	Applying Automatically Derived Gene-Groups to Automatically Predict and Refine Metabolic Pathways.	IEEE Trans. Knowl. Data Eng.	2003	DBLP DOI BibTeX RDF	enzymes, gene-groups, microbes, operons, orthologs, pathogenicity, Automation, homologs, drug-discovery, pathway, metabolic pathway, bacteria