Search results for "DNA"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
40	Kenichi Wakabayashi, Masayuki Yamamura	A Realization of Information Gate by Using Enterococcus faecalis Pheromone System.	DNA	2001	DBLP DOI BibTeX RDF
40	Yevgenia Khodor, Julia Khodor, Thomas F. Knight Jr.	Experimental Conformation of the Basic Principles of Length-only Discrimination.	DNA	2001	DBLP DOI BibTeX RDF
40	Mario J. Pérez-Jiménez, Fernando Sancho-Caparrini	Solving Knapsack Problems in a Sticker Based Model.	DNA	2001	DBLP DOI BibTeX RDF
40	Tom Head, Xia Chen, Matthew J. Nichols, Masayuki Yamamura, Susannah Gal	Aqueous Solutions of Algorithmic Problems: Emphasizing Knights on a 3 x 3.	DNA	2001	DBLP DOI BibTeX RDF
40	Maurice Margenstern, Carlos Martín-Vide, Gheorghe Paun	Computing with Membranes: Variants with an Enhanced Membrane Handling.	DNA	2001	DBLP DOI BibTeX RDF
40	John S. Conery, Warner L. Peticolas, Thomas Rush III, Kesavan Shanmugam, Jose Dominguez	A parallel algorithm for calculating the potential energy in DNA.	HICSS (5)	1995	DBLP DOI BibTeX RDF	bioelectric phenomena, potential energy, Dreiding force field, seven-term equation, bonded atoms, electrostatic interactions, nonbonded terms, MasPar MP-I, SGI workstation, long polymeric structure, deoxyribonucleic acid, parallel algorithms, parallel algorithm, execution time, DNA, DNA, biology computing, sequential program, molecule, molecular biophysics, data-parallel algorithm
39	D. Rooß	Recent Developments in DNA-Computing.	ISMVL	1997	DBLP DOI BibTeX RDF	test tubes, time complexity, DNA-computing, DNA, space complexity, Hamiltonian path problem, theoretical computer science
38	Swarna Bai Arniker, Hon Keung Kwan	Graphical representation of DNA sequences.	EIT	2009	DBLP DOI BibTeX RDF
38	Witold Kinsner, Hong Zhang	Multifractal analysis and feature extraction of DNA sequences.	IEEE ICCI	2009	DBLP DOI BibTeX RDF
38	Chung-Wei Yeh, Chih-Ping Chu	Molecular Verification of Rule-Based Systems Based on DNA Computation.	IEEE Trans. Knowl. Data Eng.	2008	DBLP DOI BibTeX RDF	Knowledge base verification, Rule-based processing, Evolutionary computing and genetic algorithms
38	Ashish Anand, Gary B. Fogel, Ganesan Pugalenthi, Ponnuthurai N. Suganthan	Prediction of Transcription Factor Families Using DNA Sequence Features.	PRIB	2008	DBLP DOI BibTeX RDF	Transcription factor family prediction, multi-class classification
38	Ahlem Abbaci, D. Sinan Haliyo, Stephane Régnier	DNA as Building Block for Self-Assembly of Micro-components.	ICQNM	2008	DBLP DOI BibTeX RDF
38	Jingjun Liu, Dachao Li	Conditional LZ Complexity of DNA Sequences Analysis and its Application in Phylogenetic Tree Reconstruction.	BMEI (1)	2008	DBLP DOI BibTeX RDF
38	Jing Hu 0001, Changhui Yan	Mining sequence features for DNA-binding site prediction.	CIBCB	2008	DBLP DOI BibTeX RDF
38	Afef Elloumi Oueslati, Noureddine Ellouze, Zied Lachiri	3D Spectrum Analysis of DNA Sequence: Application to Caenorhabditis elegans Genome.	BIBE	2007	DBLP DOI BibTeX RDF
38	Joseph Ibershoff, Jerzy W. Jaromczyk, Danny van Noort	Making the SAT decision Based on a DNA Computation.	IEEE Congress on Evolutionary Computation	2007	DBLP DOI BibTeX RDF
38	Oh Hyuk Kwon, Kyu-Yeul Wang, Ji Yoon Kim, Jeahyun Park, Duck-Jin Chung, Chong Ho Lee	DNA Inspired Digital Signal Pattern Matching Algorithm.	FBIT	2007	DBLP DOI BibTeX RDF
38	Andrzej K. Brodzik	Phase-only filtering for the masses (of DNA Data): a new approach to sequence alignment.	IEEE Trans. Signal Process.	2006	DBLP DOI BibTeX RDF
38	Michael Domaratzki	Characterizing DNA Bond Shapes Using Trajectories.	Developments in Language Theory	2006	DBLP DOI BibTeX RDF
38	Xiaolong Shi, Linqiang Pan, Xu Jin	General DNA Automaton Model with R/W Tape.	ICIC (3)	2006	DBLP DOI BibTeX RDF
38	Xiangrong Liu, Wenbin Liu, Juan Liu 0003, Linqiang Pan, Jin Xu	Predicting Melting Temperature (Tm) of DNA Duplex Based on Neural Network.	ICIC (3)	2006	DBLP DOI BibTeX RDF
38	Aili Han, Daming Zhu	A New DNA Encoding Method for Traveling Salesman Problem.	ICIC (3)	2006	DBLP DOI BibTeX RDF
38	Ming-Yang Kao	Algorithmic DNA Self-assembly.	AAIM	2006	DBLP DOI BibTeX RDF
38	Elisa Ficarra, Luca Benini, Enrico Macii, Giampaolo Zuccheri	Automated DNA fragments recognition and sizing through AFM image processing.	IEEE Trans. Inf. Technol. Biomed.	2005	DBLP DOI BibTeX RDF
38	Ming-Yang Kao, Manan Sanghi, Robert T. Schweller	Randomized Fast Design of Short DNA Words.	ICALP	2005	DBLP DOI BibTeX RDF
38	Eva Y.-H. P. Lee	Protein Network in DNA Damage Response and Breast Carcinogenesis.	BIBE	2004	DBLP DOI BibTeX RDF
38	Max H. Garzon, Kiranchand V. Bobba, Bryan P. Hyde	Digital Information Encoding on DNA.	Aspects of Molecular Computing	2004	DBLP DOI BibTeX RDF
38	Grace Steele, Vojislav Stojkovic	Agent-Oriented Approach to DNA Computing.	CSB	2004	DBLP DOI BibTeX RDF
38	John A. Rose	Equilibrium Modelling of Oligonucleotide Hybridization, Error, and Efficiency for DNA-Based Computational Systems.	KES	2004	DBLP DOI BibTeX RDF
38	Yanga Byun, Kyungsook Han	DNA Secondary Structures for Probe Design.	GD	2004	DBLP DOI BibTeX RDF
38	Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini	Joint Analysis of DNA Copy Numbers and Gene Expression Levels.	WABI	2004	DBLP DOI BibTeX RDF
38	Tero Harju, Ion Petre, Grzegorz Rozenberg	Tutorial on DNA Computing and Graph Transformation.	ICGT	2004	DBLP DOI BibTeX RDF
38	Jacek Blazewicz, Piotr Formanowicz, Radoslaw Urbaniak	DNA Based Algorithms for Some Scheduling Problems.	EvoWorkshops	2003	DBLP DOI BibTeX RDF
38	Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga	A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors.	CSB	2003	DBLP DOI BibTeX RDF	Codon optimization, immuno-modulatory motifs, multiple pattern matching, longest weighted path
38	Atsushi Kameda, Nobuo Matsuura, Masahito Yamamoto, Azuma Ohuchi	An Analysis of Computational Efficiency of DNA Computing.	UMC	2002	DBLP DOI BibTeX RDF
38	Daniele Masotti	DNA-Tract Curvature Profile Reconstruction: A Fragment Flipping Algorithm.	Discovery Science	2002	DBLP DOI BibTeX RDF
38	Grzegorz Rozenberg, Arto Salomaa	DNA Computing: New Ideas and Paradigms.	ICALP	1999	DBLP DOI BibTeX RDF
38	Lila Kari, Mark Daley, Greg Gloor, Rani Siromoney, Laura F. Landweber	How to Compute with DNA.	FSTTCS	1999	DBLP DOI BibTeX RDF
38	Henry Lai, Monserrat Carino, Narendra Singh	Naltrexone blocks RFR-induced DNA double strand breaks in rat brain cells.	Wirel. Networks	1997	DBLP DOI BibTeX RDF
38	Kenichi Fujibayashi, David Yu Zhang, Erik Winfree, Satoshi Murata	Error suppression mechanisms for DNA tile self-assembly and their simulation.	Nat. Comput.	2009	DBLP DOI BibTeX RDF	Algorithmic self-assembly, Assembly errors, Branch migration, Protecting molecules, DNA self-assembly
38	Xuesong Wang 0001, Yangyang Gu, Yuhu Cheng, Ruhai Lei	An Ensemble Classifier Based on Kernel Method for Multi-situation DNA Microarray Data.	ICIC (1)	2009	DBLP DOI BibTeX RDF	Multi-situation, DNA microarray data, Kernel method, Classifier, Ensemble learning
38	Juntao Li, Fajrian Yunus, Zhu Lei, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy	Modeling and Visualizing Heterogeneity of Spatial Patterns of Protein-DNA Interaction from High-Density Chromatin Precipitation Mapping Data.	ISBRA	2009	DBLP DOI BibTeX RDF	ChIP-chip, DNA-protein Interaction, Microarray
38	Rohani Binti Abu Bakar, Junzo Watada	Evidential Reasoning Based on DNA Computation.	KES (2)	2009	DBLP DOI BibTeX RDF	Reasoning, DNA computing, Belief function, Evidential reasoning, Plausibility
38	Cesar Sanín, Edward Szczerbicki	Constructing Decisional DNA on Renewable Energy: A Case Study.	IEA/AIE	2009	DBLP DOI BibTeX RDF	Decisional DNA, Set of Experience Knowledge Structure, Knowledge Representation, Decision Making, Knowledge Engineering, Renewable Energy
38	Angela M. Pagano, Sammy D. Pishanider, Susannah Gal	Incorporation and use of modified nucleotides in aqueous DNA computing.	Nat. Comput.	2008	DBLP DOI BibTeX RDF	Binding proteins, Fluorescent DNA, Modified nucleotides, Satisfiability problems, Antibodies
38	Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen	CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads.	RECOMB	2008	DBLP DOI BibTeX RDF	weighted PCA, DNA composition metrics, Genome Signatures, Feature Extraction, Metagenomics, Normalized Cut, Binning
38	Mustafa Karabulut, Turgay Ibrikci	Fuzzy C-Means Based DNA Motif Discovery.	ICIC (1)	2008	DBLP DOI BibTeX RDF	Fuzzy Clustering, DNA Sequences, Motif Finding
38	Marc Blenkiron, D. K. Arvind 0001, Jamie A. Davies	Design of an irreversible DNA memory element.	Nat. Comput.	2007	DBLP DOI BibTeX RDF	DNA computing, Rotatable, Latch, Synthetic biology, Memory element
38	Juan Ramón Troncoso-Pastoriza, Stefan Katzenbeisser 0001, Mehmet Utku Celik	Privacy preserving error resilient dna searching through oblivious automata.	CCS	2007	DBLP DOI BibTeX RDF	dna sarch, bioinformatics, finite automata, secure multiparty computation, homomorphic encryption, levenshtein distance, approximate matching
38	Xi-lan Feng, Zhiquiang Jiang, Jinfa Shi, Xue-wen Zong	Windows DNA-based Study on the Integrated Application of Manufacturing Information System.	IMSCCS (2)	2006	DBLP DOI BibTeX RDF	Manufacturing Info System, Windows Distributed inter-Net Architecture (Windows DNA), Contemporary Manufacturing Enterprise (CME)
38	Ping Zhu, Xuqing Tang, Zhenyuan Xu, Weihong Guan	The Algebraic Computing Structure of Four DNA Bases.	ICAT Workshops	2006	DBLP DOI BibTeX RDF	natural operation, double and single strands, semi-ring, DNA computing
38	Lucas Ledesma, Daniel Manrique, Alfonso Rodríguez-Patón	A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem.	Soft Comput.	2005	DBLP DOI BibTeX RDF	Microflow reactor, Shortest common superstring problem, DNA computing, Membrane computing
38	Woo-Cheol Kim, Sanghyun Park 0003, Jung-Im Won, Sang-Wook Kim, Jeehee Yoon	A DNA Index Structure Using Frequency and Position Information of Genetic Alphabet.	PAKDD	2005	DBLP DOI BibTeX RDF	DNA database, exact match, wildcard match, k-mismatch, indexing
38	Lei Wang 0015, Zhiping Chen 0002, Xinhua H. Jiang, Shaoli Liu	DNA-based Algorithm for 0-1 Planning Problem.	WSTST	2005	DBLP DOI BibTeX RDF	0-1 planning, fluorescence labeling, surface-based, DNA computation
38	Natasa Jonoska, Phiset Sa-Ardyen, Nadrian C. Seeman	Computation by Self-assembly of DNA Graphs.	Genet. Program. Evolvable Mach.	2003	DBLP DOI BibTeX RDF	junction molecules, ligation, graphs, DNA-computing, self-assembly, 3-SAT
38	Giuditta Franco, Vincenzo Manca	An algorithmic analysis of DNA structure.	Soft Comput.	2005	DBLP DOI BibTeX RDF	DNA structure, Duplication Algorithms, DNA Computing, Strings, Molecular Computing
36	Dror G. Feitelson, Millet Treinin	The Blueprint for Life?	Computer	2002	DBLP DOI BibTeX RDF
36	Mihai Pop, Steven Salzberg, Martin Shumway	Genome Sequence Assembly: Algorithms and Issues.	Computer	2002	DBLP DOI BibTeX RDF
36	Esko Ukkonen	Toward Complete Genome Data Mining in Computational Biology.	SWAT	2000	DBLP DOI BibTeX RDF
36	Nilanjana Banerjee, Andrea Califano	Transcription Factor Centric Discovery of Regulatory Elements in Mammalian Genomes Using Alignment-Independent Conservation Maps.	Comparative Genomics	2006	DBLP DOI BibTeX RDF	DNA binding site analysis, reverse engineering, systems biology, pattern discovery, comparative genomics, transcriptional regulation
36	Atsushi Kameda, Masahito Yamamoto, Hiroki Uejima, Masami Hagiya, Kensaku Sakamoto, Azuma Ohuchi	Hairpin-based state machine and conformational addressing: Design and experiment.	Nat. Comput.	2005	DBLP DOI BibTeX RDF	molecluar machine, DNA computing, molecular computing, molecular memory
36	Derrel Blain, Max H. Garzon, Soo-Yong Shin, Byoung-Tak Zhang, Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Azuma Ohuchi	Development, evaluation and benchmarking of simulation software for biomolecule-based computing.	Nat. Comput.	2004	DBLP DOI BibTeX RDF	access and common repository, simulation, evaluation, user interfaces, software architecture, benchmarking, DNA-based computing
35	Inbok Lee, Yoan José Pinzón Ardila	Linear Time Algorithm for the Generalised Longest Common Repeat Problem.	SPIRE	2005	DBLP DOI BibTeX RDF	inverted repeats, DNA repeats, DNA Satellites, pattern discovery, suffix arrays
35	Jiansheng Wu, Hongtao Wu, Hongde Liu, Haoyan Zhou, Xiao Sun 0006	Support Vector Machine for Prediction of DNA-Binding Domains in Protein-DNA Complexes.	LSMS (2)	2007	DBLP DOI BibTeX RDF
34	Ho-Lin Chen, Constantine G. Evans (eds.)	29th International Conference on DNA Computing and Molecular Programming, DNA 2023, September 11-15, 2023, Tohoku University, Sendai, Japan	DNA	2023	DBLP BibTeX RDF
34		Front Matter, Table of Contents, Preface, Conference Organization.	DNA	2023	DBLP DOI BibTeX RDF
34	Hannah Amelie Earley	Reversible Bond Logic.	DNA	2023	DBLP DOI BibTeX RDF
34	Robert M. Alaniz, Josh Brunner, Michael J. Coulombe, Erik D. Demaine, Jenny Diomidova, Timothy Gomez, Elise Grizzell, Ryan Knobel, Jayson Lynch, Andrew Rodriguez, Robert T. Schweller, Tim Wylie	Complexity of Reconfiguration in Surface Chemical Reaction Networks.	DNA	2023	DBLP DOI BibTeX RDF
34	Anne Condon, Yuval Emek, Noga Harlev	On the Runtime of Chemical Reaction Networks Beyond Idealized Conditions.	DNA	2023	DBLP DOI BibTeX RDF
34	Jordan Lovrod, Boyan Beronov, Chenwei Zhang, Erik Winfree, Anne Condon	Revisiting Hybridization Kinetics with Improved Elementary Step Simulation.	DNA	2023	DBLP DOI BibTeX RDF
34	David Doty, Hunter Fleming, Daniel Hader, Matthew J. Patitz, Lukas A. Vaughan	Accelerating Self-Assembly of Crisscross Slat Systems.	DNA	2023	DBLP DOI BibTeX RDF
34	Joshua Petrack, David Soloveichik, David Doty	Thermodynamically Driven Signal Amplification.	DNA	2023	DBLP DOI BibTeX RDF
34	Austin Luchsinger, David Doty, David Soloveichik	Optimal Information Encoding in Chemical Reaction Networks.	DNA	2023	DBLP DOI BibTeX RDF
34	Thomas E. Ouldridge, Shelley F. J. Wickham (eds.)	28th International Conference on DNA Computing and Molecular Programming, DNA 28, August 8-12, 2022, University of New Mexico, Albuquerque, New Mexico, USA.	DNA	2022	DBLP BibTeX RDF
34	Samuel Nalin, Guillaume Theyssier	On Turedo Hierarchies and Intrinsic Universality.	DNA	2022	DBLP DOI BibTeX RDF
34	Xiang Huang 0001, Rachel N. Huls	Computing Real Numbers with Large-Population Protocols Having a Continuum of Equilibria.	DNA	2022	DBLP DOI BibTeX RDF
34	Kuan-Lin Chen, Rebecca Schulman	Exploring Material Design Space with a Deep-Learning Guided Genetic Algorithm.	DNA	2022	DBLP DOI BibTeX RDF
34	Tiernan Kennedy, Cadence Pearce, Chris Thachuk	Fast and Robust Strand Displacement Cascades via Systematic Design Strategies.	DNA	2022	DBLP DOI BibTeX RDF
34	Andreas Padalkin, Christian Scheideler, Daniel Warner 0001	The Structural Power of Reconfigurable Circuits in the Amoebot Model.	DNA	2022	DBLP DOI BibTeX RDF
34	Andrew Alseth, Daniel Hader, Matthew J. Patitz	Universal Shape Replication via Self-Assembly with Signal-Passing Tiles (Extended Abstract).	DNA	2022	DBLP DOI BibTeX RDF
34	Irina Kostitsyna, Christian Scheideler, Daniel Warner 0001	Fault-Tolerant Shape Formation in the Amoebot Model.	DNA	2022	DBLP DOI BibTeX RDF
34		Front Matter, Table of Contents, Preface, Conference Organization.	DNA	2022	DBLP DOI BibTeX RDF
34	Matthew R. Lakin, Petr Sulc (eds.)	27th International Conference on DNA Computing and Molecular Programming, DNA 27, September 13-16, 2021, Oxford, UK (Virtual Conference).	DNA	2021	DBLP BibTeX RDF
34	Keenan Breik, Austin Luchsinger, David Soloveichik	Molecular Machines from Topological Linkages.	DNA	2021	DBLP DOI BibTeX RDF
34	Pierre-Étienne Meunier, Damien Regnault	Directed Non-Cooperative Tile Assembly Is Decidable.	DNA	2021	DBLP DOI BibTeX RDF
34		Front Matter, Table of Contents, Preface, Conference Organization.	DNA	2021	DBLP DOI BibTeX RDF
34	Johannes Linder, Yuan-Jyue Chen, David Wong, Georg Seelig, Luis Ceze, Karin Strauss	Robust Digital Molecular Design of Binarized Neural Networks.	DNA	2021	DBLP DOI BibTeX RDF
34	Andrew Alseth, Daniel Hader, Matthew J. Patitz	Self-Replication via Tile Self-Assembly (Extended Abstract).	DNA	2021	DBLP DOI BibTeX RDF
34	David Haley, David Doty	Computing Properties of Thermodynamic Binding Networks: An Integer Programming Approach.	DNA	2021	DBLP DOI BibTeX RDF
34	David Furcy, Scott M. Summers, Logan Withers	Improved Lower and Upper Bounds on the Tile Complexity of Uniquely Self-Assembling a Thin Rectangle Non-Cooperatively in 3D.	DNA	2021	DBLP DOI BibTeX RDF
34	Titus H. Klinge, James I. Lathrop, Peter-Michael Osera, Allison Rogers	Reactamole: Functional Reactive Molecular Programming.	DNA	2021	DBLP DOI BibTeX RDF
34	Matthew Cook, Tristan Stérin, Damien Woods	Small Tile Sets That Compute While Solving Mazes.	DNA	2021	DBLP DOI BibTeX RDF
34	Anne Condon, Monir Hajiaghayi, Chris Thachuk	Predicting Minimum Free Energy Structures of Multi-Stranded Nucleic Acid Complexes Is APX-Hard.	DNA	2021	DBLP DOI BibTeX RDF
34	Cody W. Geary, Matthew J. Patitz (eds.)	26th International Conference on DNA Computing and Molecular Programming, DNA 26, September 14-17, 2020, Oxford, UK (Virtual Conference).	DNA	2020	DBLP BibTeX RDF
34	Abdulmelik Mohammed, Natasa Jonoska, Masahico Saito	The Topology of Scaffold Routings on Non-Spherical Mesh Wireframes.	DNA	2020	DBLP DOI BibTeX RDF
34		Front Matter, Table of Contents, Preface, Conference Organization.	DNA	2020	DBLP DOI BibTeX RDF
34	Yuta Matsumura, Ibuki Kawamata, Satoshi Murata	Design Automation of Polyomino Set That Self-Assembles into a Desired Shape.	DNA	2020	DBLP DOI BibTeX RDF
34	James I. Lathrop, Jack H. Lutz, Robyn R. Lutz, Hugh D. Potter, Matthew R. Riley	Population-Induced Phase Transitions and the Verification of Chemical Reaction Networks.	DNA	2020	DBLP DOI BibTeX RDF
34	David Caballero, Timothy Gomez, Robert T. Schweller, Tim Wylie	Verification and Computation in Restricted Tile Automata.	DNA	2020	DBLP DOI BibTeX RDF
34	Marko Vasic, David Soloveichik, Sarfraz Khurshid	CRNs Exposed: A Method for the Systematic Exploration of Chemical Reaction Networks.	DNA	2020	DBLP DOI BibTeX RDF