Search results for "Haplotype"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
17	Zhipeng Cai 0001, Hadi Sabaa, Yining Wang, Randy Goebel, Zhiquan Wang, Jiaofen Xu, Paul Stothard, Guohui Lin	Most parsimonious haplotype allele sharing determination.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
17	Søren Besenbacher, Christian N. S. Pedersen, Thomas Mailund	A fast algorithm for genome-wide haplotype pattern mining.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
17	Lusheng Wang 0001, Zhanyong Wang, Wanling Yang	Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
17	Ali Katanforoush, Mehdi Sadeghi, Hamid Pezeshk, Elahe Elahi	Global haplotype partitioning for maximal associated SNP pairs.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
17	Ursula K. Frei, Bernd Wollenweber, Thomas Lübberstedt	"PolyMin": software for identification of the minimum number of polymorphisms required for haplotype and genotype differentiation.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
17	Alessandro Perina, Marco Cristani, Luciano Xumerle, Vittorio Murino, Pier Franco Pignatti, Giovanni Malerba	Fully non-homogeneous hidden Markov model double net: A generative model for haplotype reconstruction and block discovery.	Artif. Intell. Medicine	2009	DBLP DOI BibTeX RDF
17	Kazuharu Misawa, Naoyuki Kamatani	ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing.	Source Code Biol. Medicine	2009	DBLP DOI BibTeX RDF
17	Matti Pirinen	Estimating population haplotype frequencies from pooled SNP data using incomplete database information.	Bioinform.	2009	DBLP DOI BibTeX RDF
17	Jong Hyun Kim, Woo-Cheol Kim, Michael S. Waterman, Sanghyun Park 0003, Lei M. Li	HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome.	Bioinform.	2009	DBLP DOI BibTeX RDF
17	Quan Long, Daniel G. MacArthur, Zemin Ning, Chris Tyler-Smith	HI: haplotype improver using paired-end short reads.	Bioinform.	2009	DBLP DOI BibTeX RDF
17	Anthony Y. C. Kuk, Han Zhang 0003, Yaning Yang	Computationally feasible estimation of haplotype frequencies from pooled DNA with and without Hardy-Weinberg equilibrium.	Bioinform.	2009	DBLP DOI BibTeX RDF
17	Ryuichi Azuma, Makoto Sakamoto, Hiroshi Furutani	Haplotype estimation from genotypical data by genetic algorithm.	Artif. Life Robotics	2009	DBLP DOI BibTeX RDF
17	Xin Li, Jing Li 0002	An Almost Linear Time Algorithm for a General Haplotype Solution on Tree Pedigrees with no Recombination and its Extensions.	J. Bioinform. Comput. Biol.	2009	DBLP DOI BibTeX RDF
17	Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao	Haplotype inferring via galled-tree networks using a hypergraph covering problem for special genotype matrices.	Discret. Appl. Math.	2009	DBLP DOI BibTeX RDF
17	Arpad Kelemen, Athanasios V. Vasilakos, Yulan Liang	Computational Intelligence in Bioinformatics: SNP/Haplotype Data in Genetic Association Study for Common Diseases.	IEEE Trans. Inf. Technol. Biomed.	2009	DBLP DOI BibTeX RDF
17	Mee Yee Chan, Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao	Linear-Time Haplotype Inference on Pedigrees without Recombinations and Mating Loops.	SIAM J. Comput.	2009	DBLP DOI BibTeX RDF
17	Li-Yeh Chuang, Yu-Jen Hou, Cheng-Hong Yang 0001	Fuzzy guided BPSO method for haplotype tag SNP selection.	FUZZ-IEEE	2009	DBLP DOI BibTeX RDF
17	M-Hossein Moeinzadeh, Ehsan Asgarian, Morteza Mohammad Noori, Mehdi Sadeghi, Sara Sharifian-R	F.C.A: Designing a fuzzy clustering algorithm for haplotype assembly.	FUZZ-IEEE	2009	DBLP DOI BibTeX RDF
17	Ekhine Irurozki, José Antonio Lozano 0001	A new preprocessing procedure for the haplotype inference problem.	IEEE Congress on Evolutionary Computation	2009	DBLP DOI BibTeX RDF
17	Luca Di Gaspero, Andrea Roli	Flexible Stochastic Local Search for Haplotype Inference.	LION	2009	DBLP DOI BibTeX RDF
17	Dongsheng Che, Haibao Tang, Yinglei Song	Haplotype inference using a genetic algorithm.	CIBCB	2009	DBLP DOI BibTeX RDF
17	Ion I. Mandoiu	Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads.	BICoB	2009	DBLP DOI BibTeX RDF
17	Pasi Rastas	Computational Techniques for Haplotype Inference and for Local Alignment Significance.		2009	RDF
17	Ji-Hong Zhang, Ling-Yun Wu, Jian Chen, Xiang-Sun Zhang	A fast haplotype inference method for large population genotype data.	Comput. Stat. Data Anal.	2008	DBLP DOI BibTeX RDF
17	Weiyi Qian, Yingjie Yang, Ningning Yang, Chun Li	Particle swarm optimization for SNP haplotype reconstruction problem.	Appl. Math. Comput.	2008	DBLP DOI BibTeX RDF
17	Robert M. Nowak, Rafal Ploski	NullHap - a versatile application to estimate haplotype frequencies from unphased genotypes in the presence of null alleles.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
17	Hiroyuki Mishima, Andrew C. Lidral, Jun Ni	Application of the Linux cluster for exhaustive window haplotype analysis using the FBAT and Unphased programs.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
17	Olivier Delaneau, Cédric Coulonges, Jean-François Zagury	Shape-IT: new rapid and accurate algorithm for haplotype inference.	BMC Bioinform.	2008	DBLP DOI BibTeX RDF
17	Kuo-ching Liang, Xiaodong Wang 0001	A Deterministic Sequential Monte Carlo Method for Haplotype Inference.	IEEE J. Sel. Top. Signal Process.	2008	DBLP DOI BibTeX RDF
17	Inês Lynce, João Marques-Silva 0001	Haplotype Inference with Boolean Satisfiability.	Int. J. Artif. Intell. Tools	2008	DBLP DOI BibTeX RDF
17	Kristin L. Ayers, Kenneth Lange	Penalized estimation of haplotype frequencies.	Bioinform.	2008	DBLP DOI BibTeX RDF
17	Mamoru Kato, Yusuke Nakamura, Tatsuhiko Tsunoda	MOCSphaser: a haplotype inference tool from a mixture of copy number variation and single nucleotide polymorphism data.	Bioinform.	2008	DBLP DOI BibTeX RDF
17	Han Zhang 0003, Hsin-Chou Yang, Yaning Yang	PoooL: an efficient method for estimating haplotype frequencies from large DNA pools.	Bioinform.	2008	DBLP DOI BibTeX RDF
17	Nadezhda Sazonova, E. James Harner	Haplotype Inference and Block Partitioning in Mixed Population Samples.	J. Bioinform. Comput. Biol.	2008	DBLP DOI BibTeX RDF
17	Luca Di Gaspero, Andrea Roli	Stochastic local search for large-scale instances of the haplotype inference problem by pure parsimony.	J. Algorithms	2008	DBLP DOI BibTeX RDF
17	Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc	Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity.	J. Comput. Biol.	2008	DBLP DOI BibTeX RDF
17	Zhixiang Chen 0001, Bin Fu, Robert T. Schweller, Boting Yang, Zhiyu Zhao, Binhai Zhu	Linear Time Probabilistic Algorithms for the Singular Haplotype Reconstruction Problem from SNP Fragments.	J. Comput. Biol.	2008	DBLP DOI BibTeX RDF
17	Ehsan Asgarian, M-Hossein Moeinzadeh, Jafar Habibi, Sara Sharifian-R, Ammar Rasooli-V, Amir Najafi-Ardabili	Solving Haplotype Reconstruction Problem in MEC Model with Hybrid Information Fusion.	EMS	2008	DBLP DOI BibTeX RDF
17	Esra Erdem 0001, Ferhan Türe	Efficient Haplotype Inference with Answer Set Programming.	AAAI	2008	DBLP BibTeX RDF
17	Ferhan Türe, Esra Erdem 0001	Efficient Haplotype Inference with Answer Set Programming.	AAAI	2008	DBLP BibTeX RDF
17	Xinshun Xu, Jun Ma 0001, Jiahai Wang	A Hopfield-Type Neural Network for Haplotype Assembly Problem.	ICNC (5)	2008	DBLP DOI BibTeX RDF
17	Rui-jie Zhang, Yong-shuai Jian, Guiyou Liu, Zhen Wang, Xia Li 0004, Zhiqiang Chen, Jin Li 0024, Chen Huang	A Systematic Method Based on Haplotype Analysis: Application to Risk Alleles and Genes Mining for RA.	ICNC (5)	2008	DBLP DOI BibTeX RDF
17	Andrew S. Allen	Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies.	ISBRA	2008	DBLP DOI BibTeX RDF
17	Zhixiang Chen 0001, Bin Fu, Robert T. Schweller, Boting Yang, Zhiyu Zhao, Binhai Zhu	Linear Time Probabilistic Algorithms for the Singular Haplotype Reconstruction Problem from SNP Fragments.	APBC	2008	DBLP BibTeX RDF
17	Vikas Bansal 0001, Vineet Bafna	HapCUT: an efficient and accurate algorithm for the haplotype assembly problem.	ECCB	2008	DBLP DOI BibTeX RDF
17	Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao	Haplotype Inferring Via Galled-Tree Networks Is NP-Complete.	COCOON	2008	DBLP DOI BibTeX RDF
17	Anthony Labarre	Combinatorial aspects of genome rearrangements and haplotype networks.		2008	RDF
17	Ho-Youl Jung, Yun-Ju Park, Young-Jin Kim, Jung-Sun Park, Kuchan Kimm, InSong Koh	New methods for imputation of missing genotype using linkage disequilibrium and haplotype information.	Inf. Sci.	2007	DBLP DOI BibTeX RDF
17	Tom R. Gaunt, Santiago Rodríguez, Ian N. M. Day	Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
17	Dai Osabe, Toshihito Tanahashi, Kyoko Nomura, Shuichi Shinohara, Naoto Nakamura, Toshikazu Yoshikawa, Hiroshi Shiota, Parvaneh Keshavarz, Yuka Yamaguchi, Kiyoshi Kunika, Maki Moritani, Hiroshi Inoue, Mitsuo Itakura	Evaluation of sample size effect on the identification of haplotype blocks.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
17	Chung Mo Nam, Dae Ryong Kang, Jinheum Kim	Haplotype-based score test for linkage in nuclear families.	BMC Bioinform.	2007	DBLP DOI BibTeX RDF
17	Lan Liu 0001, Xi Chen 0001, Jing Xiao, Tao Jiang 0001	Complexity and approximation of the minimum recombinant haplotype configuration problem.	Theor. Comput. Sci.	2007	DBLP DOI BibTeX RDF
17	Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, Eran Halperin	HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling.	Bioinform.	2007	DBLP DOI BibTeX RDF
17	Shaun Purcell, Mark J. Daly, Pak Chung Sham	WHAP: haplotype-based association analysis.	Bioinform.	2007	DBLP DOI BibTeX RDF
17	Augustin Luna, Kristin K. Nicodemus	snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package.	Bioinform.	2007	DBLP DOI BibTeX RDF
17	D. A. Tregouet, V. Garelle	A new JAVA interface implementation of THESIAS: testing haplotype effects in association studies.	Bioinform.	2007	DBLP DOI BibTeX RDF
17	Luca Di Gaspero, Andrea Roli	A preliminary analysis on metaheuristics methods applied to the Haplotype Inference Problem	CoRR	2007	DBLP BibTeX RDF
17	Ying Wang, Enmin Feng, Ruisheng Wang, Dan Zhang	The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm.	Comput. Biol. Chem.	2007	DBLP DOI BibTeX RDF
17	Eric P. Xing, Michael I. Jordan, Roded Sharan	Bayesian Haplotype Inference via the Dirichlet Process.	J. Comput. Biol.	2007	DBLP DOI BibTeX RDF
17	Li Lin, Limsoon Wong, Tze-Yun Leong, Pohsan Lai	ECTracker - An Efficient Algorithm for Haplotype Analysis and Classification.	MedInfo	2007	DBLP DOI BibTeX RDF
17	Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao	Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls.	ISBRA	2007	DBLP DOI BibTeX RDF
17	Pasi Rastas, Esko Ukkonen	Haplotype Inference Via Hierarchical Genotype Parsing.	WABI	2007	DBLP DOI BibTeX RDF
17	Phillip McClurg, Mathew T. Pletcher, Tim Wiltshire, Andrew I. Su	Comparative analysis of haplotype association mapping algorithms.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
17	Staal Amund Vinterbo, Stephan Dreiseitl, Lucila Ohno-Machado	Approximation properties of haplotype tagging.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
17	Qiangfeng Zhang, YuZhong Zhao, Guoliang Chen 0001, Yun Xu	Estimate haplotype frequencies in pedigrees.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
17	Jing Li 0002, Yingyao Zhou, Robert C. Elston	Haplotype-based quantitative trait mapping using a clustering algorithm.	BMC Bioinform.	2006	DBLP DOI BibTeX RDF
17	Chun Zhang, Dione K. Bailey, Tarif Awad, Guoying Liu, Guoliang Xing, Manqiu Cao, Venu Valmeekam, Jacques Retief, Hajime Matsuzaki, Margaret Taub, Mark Seielstad, Giulia C. Kennedy	A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.	Bioinform.	2006	DBLP DOI BibTeX RDF
17	Claire Bardel, Vincent Danjean, Emmanuelle Génin	ALTree: association detection and localization of susceptibility sites using haplotype phylogenetic trees.	Bioinform.	2006	DBLP DOI BibTeX RDF
17	Eleazar Eskin, Roded Sharan, Eran Halperin	A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions.	J. Bioinform. Comput. Biol.	2006	DBLP DOI BibTeX RDF
17	Michael K. Ng 0001, Eric S. Fung, Yiu-Fai Lee, Wai-Ki Ching	A Recursive Method for Solving Haplotype Frequencies with Application to Genetics.	J. Bioinform. Comput. Biol.	2006	DBLP DOI BibTeX RDF
17	Vineet Bafna, Vikas Bansal 0001	Inference about Recombination from Haplotype Data: Lower Bounds and Recombination Hotspots.	J. Comput. Biol.	2006	DBLP DOI BibTeX RDF
17	Eran Halperin, Elad Hazan	HAPLOFREQ-Estimating Haplotype Frequencies Efficiently.	J. Comput. Biol.	2006	DBLP DOI BibTeX RDF
17	Natalie Castellana, Kedar Dhamdhere, Srinath Sridhar 0001, Russell Schwartz	Relaxing Haplotype Block Models for Association Testing.	Pacific Symposium on Biocomputing	2006	DBLP BibTeX RDF
17	I-Lin Wang, Hui-E Yang	Computational Experiments on Algorithms for Haplotype Inference Problems by Pure Parsimony.	JCIS	2006	DBLP DOI BibTeX RDF
17	Inês Lynce, João Marques-Silva 0001	Efficient Haplotype Inference with Boolean Satisfiability.	AAAI	2006	DBLP BibTeX RDF
17	Michael K. Ng 0001	A Recursive Method for Solving Haplotype Frequencies in Multiple Loci Linkage Analysis.	APBC	2006	DBLP BibTeX RDF
17	Jingwu He, Jun Zhang, Gulsah Altun, Alexander Zelikovsky, Yanqing Zhang 0001	Haplotype tagging using support vector machines.	GrC	2006	DBLP DOI BibTeX RDF
17	Amit R. Indap, Gabor T. Marth, Craig A. Struble, Peter J. Tonellato, Michael Olivier	Analysis of concordance of different haplotype block partitioning algorithms.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
17	Keyue Ding, Jing Zhang 0010, Kaixin Zhou, Yan Shen, Xuegong Zhang	htSNPer1.0: software for haplotype block partition and htSNPs selection.	BMC Bioinform.	2005	DBLP DOI BibTeX RDF
17	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani	Experimental analysis of a new algorithm for partial haplotype completion.	Int. J. Bioinform. Res. Appl.	2005	DBLP DOI BibTeX RDF
17	Guanglan Zhang, Kellathur N. Srinivasan, Anitha Veeramani, J. Thomas August, Vladimir Brusic	PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse.	Nucleic Acids Res.	2005	DBLP DOI BibTeX RDF
17	Jeffrey C. Barrett, B. Fry, Julian B. Maller, Mark J. Daly	Haploview: analysis and visualization of LD and haplotype maps.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Kui Zhang, Fengzhu Sun, Hongyu Zhao 0003	HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Kui Zhang, Zhaohui S. Qin, Ting Chen 0006, Jun S. Liu, Michael S. Waterman, Fengzhu Sun	HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Shih-Chieh Su, C.-C. Jay Kuo, Ting Chen	Inference of missing SNPs and information quantity measurements for haplotype blocks.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Zhen-Ping Li, Wenfeng Zhou, Xiang-Sun Zhang, Luonan Chen	A parsimonious tree-grow method for haplotype inference.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Jing Li 0002, Tao Jiang 0001	Haplotype-based linkage disequilibrium mapping via direct data mining.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Sheng Gu, Andrew J. Pakstis, Kenneth K. Kidd	HAPLOT: a graphical comparison of haplotype blocks, tagSNP sets and SNP variation for multiple populations.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Giovanni Montana	HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	David Posada, Taylor J. Maxwell, Alan R. Templeton	TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang	Haplotype reconstruction from SNP fragments by minimum error correction.	Bioinform.	2005	DBLP DOI BibTeX RDF
17	Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, Xiang-Sun Zhang	Haplotype assembly from aligned weighted SNP fragments.	Comput. Biol. Chem.	2005	DBLP DOI BibTeX RDF
17	Gad Kimmel, Ron Shamir	The Incomplete Perfect Phylogeny Haplotype Problem.	J. Bioinform. Comput. Biol.	2005	DBLP DOI BibTeX RDF
17	Ao Yuan, Guanjie Chen, Charles Rotimi, George E. Bonney	A Statistical Framework for Haplotype Block Inference.	J. Bioinform. Comput. Biol.	2005	DBLP DOI BibTeX RDF
17	Yao-Ting Huang, Kun-Mao Chao, Ting Chen 0006	An Approximation Algorithm for Haplotype Inference by Maximum Parsimony.	J. Comput. Biol.	2005	DBLP DOI BibTeX RDF
17	Jing Li 0002, Tao Jiang 0001	Computing the Minimum Recombinant Haplotype Configuration from Incomplete Genotype Data on a Pedigree by Integer Linear Programming.	J. Comput. Biol.	2005	DBLP DOI BibTeX RDF
17	Tianhua Niu	In silico Biology: haplotype Inference, Linkage disequilibrium Analysis, and microarray-based gene Selection Techniques.	Advances in Bioinformatics and Its Applications	2005	DBLP DOI BibTeX RDF
17	Yunkai Liu, Cun-Quan Zhang	A linear solution for haplotype Perfect Phylogeny Problem (Extended Abstract).	Advances in Bioinformatics and Its Applications	2005	DBLP DOI BibTeX RDF
17	Thomas S. Anantharaman, Venkatesh Mysore, Bud Mishra	Fast and Cheap Genome Wide Haplotype Construction via Optical Mapping.	Pacific Symposium on Biocomputing	2005	DBLP BibTeX RDF
17	Lan Liu 0001, Xi Chen 0001, Jing Xiao, Tao Jiang 0001	Complexity and Approximation of the Minimum Recombination Haplotype Configuration Problem.	ISAAC	2005	DBLP DOI BibTeX RDF	L-reduction, positive result, negative result, bounded number, mates, complexity, approximation, children, SNP, recombinant, Haplotyping, pedigree