Search results for "ISBRA"

Hits ?▲	Authors	Title	Venue	Year	Link
1	Akshay Deepak, Jianrong Dong, David Fernández-Baca	Identifying Rogue Taxa through Reduced Consensus: NP-Hardness and Exact Algorithms.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Xi Chen 0056, Chen Wang 0001, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan	Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Cynthia Gibas	Analytics Approaches for the Era of 10, 000* Genomes *and Counting.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Lars Wienbrandt, Daniel Siebert, Manfred Schimmler	Improvement of BLASTp on the FPGA-Based High-Performance Computer RIVYERA.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Victor Missirian, Isabelle Henry, Luca Comai, Vladimir Filkov	POPE: Pipeline of Parentally-Biased Expression.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Ambuj K. Singh	Modeling Complex Diseases Using Discriminative Network Fragments - (Invited Keynote Talk).	ISBRA	2012	DBLP DOI BibTeX RDF
1	André Wehe, J. Gordon Burleigh, Oliver Eulenstein	Algorithms for Knowledge-Enhanced Supertrees.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Laurent Bulteau, Minghui Jiang 0001	Inapproximability of (1, 2)-Exemplar Distance.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Juntao Li, Kwok Pui Choi, R. Krishna Murthy Karuturi	Iterative Piecewise Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Ralph W. Crosby, Tiffani L. Williams	A Fast Algorithm for Computing the Quartet Distance for Large Sets of Evolutionary Trees.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Yann Christinat, Bernard M. E. Moret	A Transcript Perspective on Evolution.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Tim Wylie, Binhai Zhu	A Polynomial Time Solution for Protein Chain Pair Simplification under the Discrete Fréchet Distance.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Hyun Jung Park, Luay Nakhleh	MURPAR: A Fast Heuristic for Inferring Parsimonious Phylogenetic Networks from Multiple Gene Trees.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Bonnie Kirkpatrick	Non-identifiable Pedigrees and a Bayesian Solution.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Junjie Yu, Henry Chi-Ming Leung, Siu-Ming Yiu, Yong Zhang 0001, Francis Y. L. Chin, Nathan Hobbs, Amy Y. X. Wang	Phylogenetic Tree Reconstruction with Protein Linkage.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Pawel Górecki 0001, J. Gordon Burleigh, Oliver Eulenstein	GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Isra Al-Turaiki, Ghada Badr, Hassan Mathkour	Trie-based Apriori Motif Discovery Approach.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson	A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Fei Guo 0001, Shuai Cheng Li 0001, Lusheng Wang 0001	P-Binder: A System for the Protein-Protein Binding Sites Identification.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Ayshwarya Subramanian, Stanley Shackney, Russell Schwartz	Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Rukhsana Yeasmin, Steven Skiena	Designing RNA Secondary Structures in Coding Regions.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Matteo Re, Giorgio Valentini	Large Scale Ranking and Repositioning of Drugs with Respect to DrugBank Therapeutic Categories.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Si Li 0003, Kwok Pui Choi, Taoyang Wu, Louxin Zhang	Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Jirí Novák, David Hoksza, Jakub Lokoc, Tomás Skopal	On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Michael Q. Zhang	Computational Modeling of Mammalian Promoters - (Invited Keynote Talk).	ISBRA	2012	DBLP DOI BibTeX RDF
1	Leonidas G. Bleris, Ion I. Mandoiu, Russell Schwartz, Jianxin Wang (eds.)	Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings	ISBRA	2012	DBLP DOI BibTeX RDF
1	Bhaskar DasGupta	Models and Algorithmic Tools for Computational Processes in Cellular Biology: Recent Developments and Future Directions - (Invited Keynote Talk).	ISBRA	2012	DBLP DOI BibTeX RDF
1	Jingfen Zhang, Dong Xu 0002	Protein Structure Prediction and Clustering Using MUFOLD.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Peter Damaschke, Leonid Molokov	Error Propagation in Sparse Linear Systems with Peptide-Protein Incidence Matrices.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron	On the Comparison of Sets of Alternative Transcripts.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Debarka Sengupta, Ujjwal Maulik, Sanghamitra Bandyopadhyay	Score Based Aggregation of microRNA Target Orderings.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Pawel Górecki 0001, Oliver Eulenstein	A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees.	ISBRA	2012	DBLP DOI BibTeX RDF
1	Marius Nicolae, Ion I. Mandoiu	Accurate Estimation of Gene Expression Levels from DGE Sequencing Data.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Luqman Hodgkinson, Richard M. Karp	Algorithms to Detect Multiprotein Modularity Conserved during Evolution.	ISBRA	2011	DBLP DOI BibTeX RDF
1	David Sankoff	OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk).	ISBRA	2011	DBLP DOI BibTeX RDF
1	Jianer Chen, Jianxin Wang 0001, Alexander Zelikovsky (eds.)	Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings	ISBRA	2011	DBLP DOI BibTeX RDF
1	Pingzhao Hu, Shelley B. Bull, Hui Jiang 0001	Gene Network Modules-Based Liner Discriminant Analysis of Microarray Gene Expression Data.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Wen-Chieh Chang 0002, Sudheer Vakati, Roland Krause, Oliver Eulenstein	Mining Biological Interaction Networks Using Weighted Quasi-Bicliques.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Ján Manuch, Murray Patterson, Arvind Gupta	Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Pavol Jancura, Eleftheria Mavridou, Beatriz Pontes, Elena Marchiori	Describing the Orthology Signal in a PPI Network at a Functional, Complex Level.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Chunfang Zheng, David Sankoff	Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Pawel Górecki 0001, Oliver Eulenstein	A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Eric P. Xing	Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach - (Keynote Talk).	ISBRA	2011	DBLP DOI BibTeX RDF
1	Harris T. Lin, J. Gordon Burleigh, Oliver Eulenstein	The Deep Coalescence Consensus Tree Problem is Pareto on Clusters.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Bernard M. E. Moret	Phylogenetic Analysis of Whole Genomes - (Keynote Talk).	ISBRA	2011	DBLP DOI BibTeX RDF
1	John D. Eblen, Charles A. Phillips, Gary L. Rogers, Michael A. Langston	The Maximum Clique Enumeration Problem: Algorithms, Applications and Implementations.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Jun Ren, Jianxin Wang 0001, Min Li 0007, Huan Wang, Binbin Liu	Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Krister M. Swenson, Eric C. H. Chen, Nicholas D. Pattengale, David Sankoff	The Kernel of Maximum Agreement Subtrees.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Fei Guo 0001, Lusheng Wang 0001	Computing the Protein Binding Sites.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Hui Li 0032, Lauren Scott, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, William M. Southerland	Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search Approach.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Yan Fu, Rong Pan, Qiang Yang 0001, Wen Gao 0001	Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Huan Wang, Min Li 0007, Jianxin Wang 0001, Yi Pan 0001	A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Yi-Tsung Tang, Hung-Yu Kao	TransDomain: A Transitive Domain-Based Method in Protein-Protein Interaction Prediction.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca	Fast Local Search for Unrooted Robinson-Foulds Supertrees.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Yu-Cheng Liu, Po-I Chiu, Hsuan-Cheng Huang, Vincent S. Tseng	Prediction of Essential Genes by Mining Gene Ontology Semantics.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Liping Wei	Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications - (Keynote Talk).	ISBRA	2011	DBLP DOI BibTeX RDF
1	Xiaohua Wan, Fa Zhang 0001, Qi Chu 0002, Zhiyong Liu 0002	High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs.	ISBRA	2011	DBLP DOI BibTeX RDF
1	David Hoksza, Daniel Svozil	SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Russell Schwartz	Phylogenetics of Heterogeneous Samples - (Keynote Talk).	ISBRA	2011	DBLP DOI BibTeX RDF
1	Felipe Lessa, Daniele Martins Neto, Kátia Guimarães, Marcelo M. Brigido, Maria Emília Telles Walter	Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein	Algorithms for Rapid Error Correction for the Gene Duplication Problem.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Jeremy J. Jay, John D. Eblen, Yun Zhang 0013, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston	A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract).	ISBRA	2011	DBLP DOI BibTeX RDF
1	Ghada Badr, Marcel Turcotte	Component-Based Matching for Multiple Interacting RNA Sequences.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano	Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Jonathan Q. Jiang	Multi-label Correlated Semi-supervised Learning for Protein Function Prediction.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Andrea Szabóová, Ondrej Kuzelka, Sergio Morales E., Filip Zelezný, Jakub Tolar	Prediction of DNA-Binding Propensity of Proteins by the Ball-Histogram Method.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Bin Fu, Louxin Zhang	A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Xiuwei Zhang, Bernard M. E. Moret	ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Vadim Mozhayskiy, Ilias Tagkopoulos	In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Jirí Kléma, Matej Holec, Filip Zelezný, Jakub Tolar	Comparative Evaluation of Set-Level Techniques in Microarray Classification.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Jianyi Yang, Xin Chen 0037	A Consensus Approach to Predicting Protein Contact Map via Logistic Regression.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Chaojun Li, Jieyue He, Baoliu Ye, Wei Zhong	A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction Networks.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Yu Lin 0001, Vaibhav Rajan, Bernard M. E. Moret	A Metric for Phylogenetic Trees Based on Matching.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Han Wang, John Fazekas, Matthew Booth, Qi Liu 0019, Dongsheng Che	An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes.	ISBRA	2011	DBLP DOI BibTeX RDF
1	Duong Dai Doan, Patricia A. Evans	Fixed-Parameter Algorithm for General Pedigrees with a Single Pair of Sites.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Suzanne J. Matthews, Seung-Jin Sul, Tiffani L. Williams	A Novel Approach for Compressing Phylogenetic Trees.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Thomas K. F. Wong, Brenda W. Y. Cheung, Tak Wah Lam, Siu-Ming Yiu	Local Structural Alignment of RNA with Affine Gap Model.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Jay W. Kim, Rahul Singh	Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Ming-Chi Tsai, Guy E. Blelloch, R. Ravi 0001, Russell Schwartz	A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Yufeng Wu, Jiayin Wang	Fast Computation of the Exact Hybridization Number of Two Phylogenetic Trees.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Carlos H. A. Higa, Vitor H. P. Louzada, Ronaldo Fumio Hashimoto	Analysis of Gene Interactions Using Restricted Boolean Networks and Time-Series Data.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Mona Singh 0001	Predicting and Analyzing Cellular Networks.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Piotr Berman	Successes and Failures of Elegant Algorithms in Computational Biology.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Liqing Zhang 0002, Layne T. Watson	The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Yosi Shibberu, Allen Holder, Kyla Lutz	Fast Protein Structure Alignment.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Nicholas D. Pattengale, Krister M. Swenson, Bernard M. E. Moret	Uncovering Hidden Phylogenetic Consensus.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Noah M. Daniels, Anoop Kumar, Lenore Cowen, Matthew Menke	Touring Protein Space with Matt.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Ivan Ovcharenko	Structure of Proximal and Distant Regulatory Elements in the Human Genome.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Martin Ehler, Vinodh N. Rajapakse, Barry Zeeberg, Brian P. Brooks, Jacob D. Brown, Wojciech Czaja, Robert F. Bonner	Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Michael L. Blinov, Oliver Ruebenacker, James C. Schaff, Ion I. Moraru	Modeling without Borders: Creating and Annotating VCell Models Using the Web.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Jun Ren, Jianxin Wang 0001, Jianer Chen, Min Li 0007, Gang Chen 0010	An Agglomerate Algorithm for Mining Overlapping and Hierarchical Functional Modules in Protein Interaction Networks.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Mark B. Gerstein	Human Genome Annotation.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Catalin C. Barbacioru	Tracing the Early Cell Divisions of Mouse Embryos by Single Cell RNA-Seq.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Bo Liu 0021, Mihai Pop	Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Juntao Li, Lei Zhu, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy	Deciphering Transcription Factor Binding Patterns from Genome-Wide High Density ChIP-chip Tiling Array Data.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Nicola Ferraro, Luigi Palopoli 0001, Simona Panni, Simona E. Rombo	"Master-Slave" Biological Network Alignment.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Min Li 0007, Jianxin Wang 0001, Huan Wang, Yi Pan 0001	Essential Proteins Discovery from Weighted Protein Interaction Networks.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Rob Gysel, Dan Gusfield	Extensions and Improvements to the Chordal Graph Approach to the Multi-state Perfect Phylogeny Problem.	ISBRA	2010	DBLP DOI BibTeX RDF
1	Laxmi Parida	Combinatorics in Recombinational Population Genomics.	ISBRA	2010	DBLP DOI BibTeX RDF
1	John Wiedenhoeft, Roland Krause, Oliver Eulenstein	Inferring Evolutionary Scenarios for Protein Domain Compositions.	ISBRA	2010	DBLP DOI BibTeX RDF

Publications at "ISBRA"( http://dblp.L3S.de/Venues/ISBRA )