Search results for "Phylogeny"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
16	Supaporn Chairungsee, Maxime Crochemore	Using minimal absent words to build phylogeny.	Theor. Comput. Sci.	2012	DBLP DOI BibTeX RDF
16	Tiffany M. Mintz, Jason D. Bakos	A Cluster-on-a-Chip Architecture for High-Throughput Phylogeny Search.	IEEE Trans. Parallel Distributed Syst.	2012	DBLP DOI BibTeX RDF
16	Julien Dutheil	Detecting coevolving positions in a molecule: why and how to account for phylogeny.	Briefings Bioinform.	2012	DBLP DOI BibTeX RDF
16	Turbo Majumder, Michael Edward Borgens, Partha Pratim Pande, Ananth Kalyanaraman	On-Chip Network-Enabled Multicore Platforms Targeting Maximum Likelihood Phylogeny Reconstruction.	IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.	2012	DBLP DOI BibTeX RDF
16	Zsuzsanna Sükösd, Bjarne Knudsen, Jørgen Kjems, Christian N. S. Pedersen	PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.	Bioinform.	2012	DBLP DOI BibTeX RDF
16	Oscar Westesson, Lars Barquist, Ian H. Holmes	HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction.	Bioinform.	2012	DBLP DOI BibTeX RDF
16	Vanderlei J. Debastiani, Valério D. Pillar	SYNCSA - R tool for analysis of metacommunities based on functional traits and phylogeny of the community components.	Bioinform.	2012	DBLP DOI BibTeX RDF
16	Ari Löytynoja, Albert J. Vilella, Nick Goldman	Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm.	Bioinform.	2012	DBLP DOI BibTeX RDF
16	Yu Lin 0001, Vaibhav Rajan, Bernard M. E. Moret	TIBA: a tool for phylogeny inference from rearrangement data with bootstrap analysis.	Bioinform.	2012	DBLP DOI BibTeX RDF
16	Pranjal Awasthi, Avrim Blum, Jamie Morgenstern, Or Sheffet	Additive Approximation for Near-Perfect Phylogeny Construction	CoRR	2012	DBLP BibTeX RDF
16	Stefan Canzar, Sandro Andreotti	A Branch-and-Cut Algorithm for the 2-Species Duplication-Loss Phylogeny Problem	CoRR	2012	DBLP BibTeX RDF
16	Zanoni Dias, Anderson Rocha 0001, Siome Goldenstein	Image Phylogeny by Minimal Spanning Trees.	IEEE Trans. Inf. Forensics Secur.	2012	DBLP DOI BibTeX RDF
16	Michael Elberfeld, Till Tantau	Phylogeny- and parsimony-based haplotype inference with constraints.	Inf. Comput.	2012	DBLP DOI BibTeX RDF
16	Fabio Cunial, Alberto Apostolico	Phylogeny Construction with Rigid Gapped Motifs.	J. Comput. Biol.	2012	DBLP DOI BibTeX RDF
16	Luka Filipovic, Danilo Mrdak, Bozo Krstajic	Performance Evaluation of Computational Phylogeny Software in Parallel Computing Environment.	ICT Innovations	2012	DBLP DOI BibTeX RDF
16	Li-Qian Zhou, Zu-Guo Yu, Guo-Sheng Han, Guang-ming Zhou, De-Sheng Wang	Some comparison on whole-proteome phylogeny of large dsDNA viruses based on dynamical language approach and feature frequency profiles method.	ICNC	2012	DBLP DOI BibTeX RDF
16	Matteo Comin, Davide Verzotto	Whole-Genome Phylogeny by Virtue of Unic Subwords.	DEXA Workshops	2012	DBLP DOI BibTeX RDF
16	Maryam Panahiazar, Ajith Ranabahu, Vahid Taslimi, Hima Yalamanchili, Arlin Stoltzfus, Jim Leebens-Mack, Amit P. Sheth	PhylOnt: A domain-specific ontology for phylogeny analysis.	BIBM	2012	DBLP DOI BibTeX RDF
16	Nicholas Andrews, Jason Eisner, Mark Dredze	Name Phylogeny: A Generative Model of String Variation.	EMNLP-CoNLL	2012	DBLP BibTeX RDF
16	Margareta Ackerman, Daniel G. Brown 0001, David Loker	Effects of rooting via outgroups on ingroup topology in phylogeny.	ICCABS	2012	DBLP DOI BibTeX RDF
16	Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier	Preserving Inversion Phylogeny Reconstruction.	WABI	2012	DBLP DOI BibTeX RDF
16	Pranjal Awasthi, Avrim Blum, Jamie Morgenstern, Or Sheffet	Additive Approximation for Near-Perfect Phylogeny Construction.	APPROX-RANDOM	2012	DBLP DOI BibTeX RDF
16	Karen Meusemann	The "Atelocerata" - A vanishing hypothesis?: Molecular phylogeny of arthropods with focus on primary wingless hexapods		2012	RDF
16	Filippo Petroni, Maurizio Serva	Automated Word Stability and Language Phylogeny.	J. Quant. Linguistics	2011	DBLP DOI BibTeX RDF
16	M. Razia, R. KarthikRaja, K. Padmanaban, P. Chellapandi, S. Sivaramakrishnan	16S rDNA-Based Phylogeny of Non-Symbiotic Bacteria of Entorno-pathogenic Nematodes from Infected Insect Cadavers.	Genom. Proteom. Bioinform.	2011	DBLP DOI BibTeX RDF
16	Rob Gysel, Dan Gusfield	Extensions and Improvements to the Chordal Graph Approach to the Multistate Perfect Phylogeny Problem.	IEEE ACM Trans. Comput. Biol. Bioinform.	2011	DBLP DOI BibTeX RDF
16	Roberto Blanco, Elvira Mayordomo, Julio Montoya, Eduardo Ruiz-Pesini	Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
16	Chunfang Zheng, David Sankoff	On the PATHGROUPS approach to rapid small phylogeny.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
16	Che-Wei Chang, Ping-Chiang Lyu, Masanori Arita	Reconstructing phylogeny from metabolic substrate-product relationships.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
16	Qin Chang, Yihui Luan, Fengzhu Sun	Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
16	Shu-Chuan Chen, Michael S. Rosenberg, Bruce G. Lindsay 0002	MixtureTree: a program for constructing phylogeny.	BMC Bioinform.	2011	DBLP DOI BibTeX RDF
16	Fumei Lam, Dan Gusfield, Srinath Sridhar 0001	Generalizing the Splits Equivalence Theorem and Four Gamete Condition: Perfect Phylogeny on Three-State Characters.	SIAM J. Discret. Math.	2011	DBLP DOI BibTeX RDF
16	Jean-Philippe Doyon, Vincent Ranwez, Vincent Daubin, Vincent Berry	Models, algorithms and programs for phylogeny reconciliation.	Briefings Bioinform.	2011	DBLP DOI BibTeX RDF
16	Jaime Huerta-Cepas, Salvador Capella-Gutiérrez, Leszek P. Pryszcz, Ivan Denisov, Diego Kormes, Marina Marcet-Houben, Toni Gabaldón	PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.	Nucleic Acids Res.	2011	DBLP DOI BibTeX RDF
16	Gregory E. Sims, Sung-Hou Kim	Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs).	Proc. Natl. Acad. Sci. USA	2011	DBLP DOI BibTeX RDF
16	Christina M. Bergey	AluHunter: a database of potentially polymorphic Alu insertions for use in primate phylogeny and population genetics.	Bioinform.	2011	DBLP DOI BibTeX RDF
16	Maurizio Serva	Phylogeny and geometry of languages from normalized Levenshtein distance	CoRR	2011	DBLP BibTeX RDF
16	Sebastien Roch	Phase Transition in Distance-Based Phylogeny Reconstruction	CoRR	2011	DBLP BibTeX RDF
16	Chiara Braghin, Riccardo Dondi, Gabriella Trucco, Paola Bonizzoni	The Binary Perfect Phylogeny with Persistent characters	CoRR	2011	DBLP BibTeX RDF
16	Manuel Bodirsky, Jens K. Müller	The Complexity of Rooted Phylogeny Problems	Log. Methods Comput. Sci.	2011	DBLP DOI BibTeX RDF
16	Navodit Misra, Guy E. Blelloch, R. Ravi 0001, Russell Schwartz	Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-State Phylogeny.	J. Comput. Biol.	2011	DBLP DOI BibTeX RDF
16	Shu-Bo Zhang, Song-Yu Zhou, Jianguo He, Jian-Huang Lai	Phylogeny Inference Based on Spectral Graph Clustering.	J. Comput. Biol.	2011	DBLP DOI BibTeX RDF
16	Yun Yu, Tandy J. Warnow, Luay Nakhleh	Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted Binary Gene Trees on Single Alleles.	J. Comput. Biol.	2011	DBLP DOI BibTeX RDF
16	Nir Ailon, Moses Charikar	Fitting Tree Metrics: Hierarchical Clustering and Phylogeny.	SIAM J. Comput.	2011	DBLP DOI BibTeX RDF
16	Yun Yu, Tandy J. Warnow, Luay Nakhleh	Algorithms for MDC-Based Multi-locus Phylogeny Inference.	RECOMB	2011	DBLP DOI BibTeX RDF
16	Zanoni Dias, Anderson Rocha 0001, Siome Goldenstein	Video Phylogeny: Recovering near-duplicate video relationships.	WIFS	2011	DBLP DOI BibTeX RDF
16	Daniel Gregory Brown, Jakub Truszkowski	Fast Error-Tolerant Quartet Phylogeny Algorithms.	CPM	2011	DBLP DOI BibTeX RDF
16	Michel Habib, Juraj Stacho	Unique Perfect Phylogeny Is NP-Hard.	CPM	2011	DBLP DOI BibTeX RDF
16	Supaporn Chairungsee, Maxime Crochemore	Building Phylogeny with Minimal Absent Words.	CIAA	2011	DBLP DOI BibTeX RDF
16	Nikolaos Alachiotis 0001, Simon A. Berger, Alexandros Stamatakis	Accelerating Phylogeny-Aware Short DNA Read Alignment with FPGAs.	FCCM	2011	DBLP DOI BibTeX RDF
16	Chunfang Zheng, David Sankoff	Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes.	ISBRA	2011	DBLP DOI BibTeX RDF
16	Chun-E. Wang, Rui-Kai Wang, Jin-Ying Dai, Tuan-Jie Zhao	Phylogeny and expression profile analyses of oleate- and linoleate-desaturase genes in soybean.	BMEI	2011	DBLP DOI BibTeX RDF
16	Yan-Lin Sun, Dong Wang, Young-Sol Kim, Wan-Geun Park, Oh-Woung Kwon, Soon-Kwan Hong	Phylogeny and evolution of Carpinus based on nrDNA ITS region sequences.	BMEI	2011	DBLP DOI BibTeX RDF
16	Daniel G. Brown 0001, Jakub Truszkowski	Towards a Practical O(n logn) Phylogeny Algorithm.	WABI	2011	DBLP DOI BibTeX RDF
16	Kristian Stevens, Bonnie Kirkpatrick	Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State Data with Missing Values.	WABI	2011	DBLP DOI BibTeX RDF
16	Sabine Thuß	Greedy phylogeny-based orthology assignment and its application to the evolutionary analysis of metabolic coupling.		2011	RDF
16	Anne Kupczok, Heiko A. Schmidt, Arndt von Haeseler	Accuracy of phylogeny reconstruction methods combining overlapping gene data sets.	Algorithms Mol. Biol.	2010	DBLP DOI BibTeX RDF
16	Elchanan Mossel, Sébastien Roch	Incomplete Lineage Sorting: Consistent Phylogeny Estimation from Multiple Loci.	IEEE ACM Trans. Comput. Biol. Bioinform.	2010	DBLP DOI BibTeX RDF
16	Adriana Muñoz, David Sankoff	Rearrangement Phylogeny of Genomes in Contig Form.	IEEE ACM Trans. Comput. Biol. Bioinform.	2010	DBLP DOI BibTeX RDF
16	Raphaël Helaers, Michel C. Milinkovitch	MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
16	Ari Löytynoja, Nick Goldman	webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
16	Russell Schwartz, Stanley Shackney	Applying unmixing to gene expression data for tumor phylogeny inference.	BMC Bioinform.	2010	DBLP DOI BibTeX RDF
16	Thomas Hoppe 0004, Ulrich Kutschera	In the shadow of Darwin: Anton de Bary's origin of myxomycetology and a molecular phylogeny of the plasmodial slime molds.	Theory Biosci.	2010	DBLP DOI BibTeX RDF
16	Christian Koetschan, Frank Förster, Alexander Keller 0006, Tina Schleicher, Benjamin Ruderisch, Roland Schwarz 0002, Tobias Müller 0001, Matthias Wolf 0002, Jörg Schultz	The ITS2 Database III - sequences and structures for phylogeny.	Nucleic Acids Res.	2010	DBLP DOI BibTeX RDF
16	Se-Ran Jun, Gregory E. Sims, Guohong A. Wu, Sung-Hou Kim	Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution.	Proc. Natl. Acad. Sci. USA	2010	DBLP DOI BibTeX RDF
16	Esther Montes, Raúl Isea, Rafael Mayo 0001	PhyloGrid: a development for a workflow in Phylogeny	CoRR	2010	DBLP BibTeX RDF
16	Michel Habib, Juraj Stacho	Unique perfect phylogeny is NP-hard	CoRR	2010	DBLP BibTeX RDF
16	Daniel Gregory Brown, Jakub Truszkowski	Fast error-tolerant quartet phylogeny algorithms	CoRR	2010	DBLP BibTeX RDF
16	Markus Riester, Camille Stephan-Otto Attolini, Robert J. Downey, Samuel Singer, Franziska Michor	A Differentiation-Based Phylogeny of Cancer Subtypes.	PLoS Comput. Biol.	2010	DBLP DOI BibTeX RDF
16	Aziz Mithani, Gail M. Preston, Jotun Hein	A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny.	PLoS Comput. Biol.	2010	DBLP DOI BibTeX RDF
16	Dan Gusfield	The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theory.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
16	Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel	Reconstructing Histories of Complex Gene Clusters on a Phylogeny.	J. Comput. Biol.	2010	DBLP DOI BibTeX RDF
16	Navodit Misra, Guy E. Blelloch, R. Ravi 0001, Russell Schwartz	Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny.	RECOMB	2010	DBLP DOI BibTeX RDF
16	María Jesús García-Pereira, Armando Caballero, Humberto Quesada	In Silico AFLP: An Application to Assess What Is Needed to Resolve a Phylogeny.	IWPACBB	2010	DBLP DOI BibTeX RDF
16	Zanoni Dias, Anderson Rocha 0001, Siome Goldenstein	First steps toward image phylogeny.	WIFS	2010	DBLP DOI BibTeX RDF
16	Michael Elberfeld, Till Tantau	Phylogeny- and Parsimony-Based Haplotype Inference with Constraints.	CPM	2010	DBLP DOI BibTeX RDF
16	YuZhong Zhao, Yun Xu, Xiaohui Yao, Ying Wang, Guoliang Chen 0001	Xor Perfect Phylogeny Haplotyping in Pedigrees.	ICIC (2)	2010	DBLP DOI BibTeX RDF
16	Rob Gysel, Dan Gusfield	Extensions and Improvements to the Chordal Graph Approach to the Multi-state Perfect Phylogeny Problem.	ISBRA	2010	DBLP DOI BibTeX RDF
16	Qingqing Cai, Xiaoyan Zhang, Zuofeng Li	MiRNAs as promising phylogenetic markers for inferring deep metazoan phylogeny and in support of Olfactores hypothesis.	BIBM	2010	DBLP DOI BibTeX RDF
16	Jack Horner	Sensitivity of a Phylogeny of the Triassic Avian-LIne Radiation to Character-Transition Ordering.	BIOCOMP	2010	DBLP BibTeX RDF
16	Jun Wang 0035, Maozu Guo 0001	SNPs and entropy based hierarchical clustering method for genetic phylogeny analysis.	FSKD	2010	DBLP DOI BibTeX RDF
16	Jessica A. Enright	A Character-Based Intersection Graph Approach to Linguistic Phylogeny.	TextGraphs@ACL	2010	DBLP BibTeX RDF
16	Kristian Stevens, Dan Gusfield	Reducing Multi-state to Binary Perfect Phylogeny with Applications to Missing, Removable, Inserted, and Deleted Data.	WABI	2010	DBLP DOI BibTeX RDF
16	Magnus Bordewich, Radu Mihaescu	Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based on Balanced Minimum Evolution.	WABI	2010	DBLP DOI BibTeX RDF
16	Matthias Bernt	Gene order rearrangement methods for the reconstruction of phylogeny		2010	RDF
16	Dan Gusfield, Yufeng Wu	The Three-state Perfect Phylogeny Problem Reduces to 2-SAT.	Commun. Inf. Syst.	2009	DBLP DOI BibTeX RDF
16	Celso C. Ribeiro, Dalessandro Soares Vianna	A hybrid genetic algorithm for the phylogeny problem using path-relinking as a progressive crossover strategy.	Int. Trans. Oper. Res.	2009	DBLP DOI BibTeX RDF
16	Feng Yue, Jian Shi, Jijun Tang	Simultaneous phylogeny reconstruction and multiple sequence alignment.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
16	Janusz Dutkowski, Jerzy Tiuryn	Phylogeny-guided interaction mapping in seven eukaryotes.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
16	Torsten Blum, Sebastian Briesemeister, Oliver Kohlbacher	MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction.	BMC Bioinform.	2009	DBLP DOI BibTeX RDF
16	Gerardo Valdisio R. Viana, Fernando A. C. Gomes, Carlos E. Ferreira, Cláudio Nogueira de Meneses	Parallelisation of a multi-neighbourhood local search heuristic for a phylogeny problem.	Int. J. Bioinform. Res. Appl.	2009	DBLP DOI BibTeX RDF
16	Marianne Winslett	Peter Buneman speaks out on phylogeny, the integration of databases and programming languages, curated databases, british plumbing, the value of talking to users, when to ignore the literature, and more.	SIGMOD Rec.	2009	DBLP DOI BibTeX RDF
16	Jorn Bruggeman, Jaap Heringa, Bernd W. Brandt	PhyloPars: estimation of missing parameter values using phylogeny.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
16	Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Martin Madera, Cyrus Chothia, Julian Gough	SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny.	Nucleic Acids Res.	2009	DBLP DOI BibTeX RDF
16	Frédéric Guyon, Céline Brochier-Armanet, Alain Guénoche	Comparison of alignment free string distances for complete genome phylogeny.	Adv. Data Anal. Classif.	2009	DBLP DOI BibTeX RDF	Mathematics Subject Classification (2000) 05C05, 68R15, 92B10, 90C27
16	Gregory E. Sims, Se-Ran Jun, Guohong A. Wu, Sung-Hou Kim	Whole-genome phylogeny of mammals: Evolutionary information in genic and nongenic regions.	Proc. Natl. Acad. Sci. USA	2009	DBLP DOI BibTeX RDF
16	Lin Himmelmann, Dirk Metzler	TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration.	Bioinform.	2009	DBLP DOI BibTeX RDF
16	Cristina Marino Buslje, Javier Santos 0002, José María Delfino, Morten Nielsen 0001	Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information.	Bioinform.	2009	DBLP DOI BibTeX RDF
16	Tomás Vinar, Brona Brejová, Giltae Song, Adam C. Siepel	Bayesian History Reconstruction of Complex Human Gene Clusters on a Phylogeny	CoRR	2009	DBLP BibTeX RDF
16	Michael Elberfeld	Perfect Phylogeny Haplotyping is Complete for Logspace	CoRR	2009	DBLP BibTeX RDF