Search results for "WABI"

Hits ?▲	Authors	Title	Venue	Year	Link	Author keywords
1	Steven Salzberg, Tandy J. Warnow (eds.)	Algorithms in Bioinformatics, 9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings	WABI	2009	DBLP DOI BibTeX RDF
1	Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp	Fast Prediction of RNA-RNA Interaction.	WABI	2009	DBLP DOI BibTeX RDF
1	Eric Rivals, Leena Salmela, Petteri Kiiskinen, Petri Kalsi, Jorma Tarhio	mpscan: Fast Localisation of Multiple Reads in Genomes.	WABI	2009	DBLP DOI BibTeX RDF
1	Timothy Hancock, Hiroshi Mamitsuka	A Markov Classification Model for Metabolic Pathways.	WABI	2009	DBLP DOI BibTeX RDF
1	Travis J. Wheeler	Large-Scale Neighbor-Joining with NINJA.	WABI	2009	DBLP DOI BibTeX RDF	Phylogeny inference, external memory, Neighbor joining
1	Kenneth Sundberg, Mark J. Clement, Quinn Snell	Visualizing Phylogenetic Treespace Using Cartographic Projections.	WABI	2009	DBLP DOI BibTeX RDF
1	Saeed Salem, Mohammed J. Zaki, Chris Bystroff	FlexSnap: Flexible Non-sequential Protein Structure Alignment.	WABI	2009	DBLP DOI BibTeX RDF
1	Crystal L. Kahn, Shay Mozes, Benjamin J. Raphael	Efficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in Genomes.	WABI	2009	DBLP DOI BibTeX RDF
1	Thomas Greve Kristensen, Jesper Buus Nielsen, Christian N. S. Pedersen	A Tree Based Method for the Rapid Screening of Chemical Fingerprints.	WABI	2009	DBLP DOI BibTeX RDF
1	Minghui Jiang 0001, Pedro J. Tejada, Ramoni O. Lasisi, Shanhong Cheng, D. Scott Fechser	K-Partite RNA Secondary Structures.	WABI	2009	DBLP DOI BibTeX RDF
1	Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner	Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes.	WABI	2009	DBLP DOI BibTeX RDF
1	Jianrong Dong, David Fernández-Baca, Fred R. McMorris	Constructing Majority-Rule Supertrees.	WABI	2009	DBLP DOI BibTeX RDF
1	Peter Husemann 0002, Jens Stoye	Phylogenetic Comparative Assembly.	WABI	2009	DBLP DOI BibTeX RDF
1	Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Raffaella Rizzi	Minimum Factorization Agreement of Spliced ESTs.	WABI	2009	DBLP DOI BibTeX RDF
1	Marcel H. Schulz, Sebastian Köhler 0001, Sebastian Bauer 0002, Martin Vingron, Peter N. Robinson	Exact Score Distribution Computation for Similarity Searches in Ontologies.	WABI	2009	DBLP DOI BibTeX RDF
1	Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio	On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices.	WABI	2009	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Regula Rupp	Summarizing Multiple Gene Trees Using Cluster Networks.	WABI	2008	DBLP DOI BibTeX RDF
1	Stefan Grünewald, Andreas Spillner 0001, Kristoffer Forslund, Vincent Moulton	Constructing Phylogenetic Supernetworks from Quartets.	WABI	2008	DBLP DOI BibTeX RDF
1	Zoran Nikoloski, Sergio Grimbs, Joachim Selbig, Oliver Ebenhöh	Hardness and Approximability of the Inverse Scope Problem.	WABI	2008	DBLP DOI BibTeX RDF	completeness, scope, metabolic networks
1	Cheng Soon Ong, Alexander Zien	An Automated Combination of Kernels for Predicting Protein Subcellular Localization.	WABI	2008	DBLP DOI BibTeX RDF
1	Sagi Snir, Tamir Tuller	Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models.	WABI	2008	DBLP DOI BibTeX RDF
1	Michal Ziv-Ukelson, Irit Gat-Viks, Ydo Wexler, Ron Shamir	A Faster Algorithm for RNA Co-folding.	WABI	2008	DBLP DOI BibTeX RDF
1	Alexander Medvedovsky, Vineet Bafna, Uri Zwick, Roded Sharan	An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks.	WABI	2008	DBLP DOI BibTeX RDF
1	Qi Zhang 0025, Wei Wang 0010, Leonard McMillan, Jan F. Prins, Fernando Pardo-Manuel de Villena, David Threadgill	Genotype Sequence Segmentation: Handling Constraints and Noise.	WABI	2008	DBLP DOI BibTeX RDF
1	Martin Paluszewski, Pawel Winter	Protein Decoy Generation Using Branch and Bound with Efficient Bounding.	WABI	2008	DBLP DOI BibTeX RDF
1	Hans-Joachim Böckenhauer, Abu Zafer M. Dayem Ullah, Leonidas Kapsokalivas, Kathleen Steinhöfel	A Local Move Set for Protein Folding in Triangular Lattice Models.	WABI	2008	DBLP DOI BibTeX RDF
1	José Augusto Amgarten Quitzau, Jens Stoye	Detecting Repeat Families in Incompletely Sequenced Genomes.	WABI	2008	DBLP DOI BibTeX RDF
1	Martin Simonsen, Thomas Mailund, Christian N. S. Pedersen	Rapid Neighbour-Joining.	WABI	2008	DBLP DOI BibTeX RDF
1	Vladimir Yanovski, Stephen M. Rumble, Michael Brudno	Read Mapping Algorithms for Single Molecule Sequencing Data.	WABI	2008	DBLP DOI BibTeX RDF
1	Meng Zhang 0006, William Arndt, Jijun Tang	A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem.	WABI	2008	DBLP DOI BibTeX RDF
1	Seung-Jin Sul, Grant R. Brammer, Tiffani L. Williams	Efficiently Computing Arbitrarily-Sized Robinson-Foulds Distance Matrices.	WABI	2008	DBLP DOI BibTeX RDF	Robinson-Foulds distance, clustering, performance analysis, phylogenetic trees
1	Nico Pfeifer, Oliver Kohlbacher	Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles.	WABI	2008	DBLP DOI BibTeX RDF
1	Inke Herms, Sven Rahmann	Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata.	WABI	2008	DBLP DOI BibTeX RDF	Seed sensitivity, Indel seed, Probabilistic arithmetic automaton, Homology search, Spaced seed, Multiple seeds
1	Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron	Exact Transcriptome Reconstruction from Short Sequence Reads.	WABI	2008	DBLP DOI BibTeX RDF
1	Thomas Lingner, Peter Meinicke	Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach.	WABI	2008	DBLP DOI BibTeX RDF	Pfam, target set reduction, machine learning, large-scale, protein classification, multi-class, metagenomics, homology search, protein function prediction, multi-label
1	Keith A. Crandall, Jens Lagergren (eds.)	Algorithms in Bioinformatics, 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings	WABI	2008	DBLP DOI BibTeX RDF
1	Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp	The Relation between Indel Length and Functional Divergence: A Formal Study.	WABI	2008	DBLP DOI BibTeX RDF	Alignment statistics, Pair Hidden Markov Models, Insertions, Deletions, GO
1	Pasi Rastas, Jussi Kollin, Mikko Koivisto	Fast Bayesian Haplotype Inference Via Context Tree Weighting.	WABI	2008	DBLP DOI BibTeX RDF
1	Peter Damaschke	Minimum Common String Partition Parameterized.	WABI	2008	DBLP DOI BibTeX RDF
1	Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh	NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem.	WABI	2008	DBLP DOI BibTeX RDF	Noah’s Ark Problem, phylogenetic diversity, approximation algorithm
1	Andrew Wei Xu, David Sankoff	Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem.	WABI	2008	DBLP DOI BibTeX RDF
1	Serdar Bozdag, Timothy J. Close, Stefano Lonardi	Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming.	WABI	2008	DBLP DOI BibTeX RDF
1	Florian Battke, Carsten Müller-Tidow, Hubert Serve, Kay Nieselt	Post-Hybridization Quality Measures for Oligos in Genome-Wide Microarray Experiments.	WABI	2008	DBLP DOI BibTeX RDF
1	Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring 0001, Knut Reinert, Martin Vingron	Fast and Adaptive Variable Order Markov Chain Construction.	WABI	2008	DBLP DOI BibTeX RDF
1	Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Fábio Viduani Martinez, Marie-France Sagot, Leen Stougie	Enumerating Precursor Sets of Target Metabolites in a Metabolic Network.	WABI	2008	DBLP DOI BibTeX RDF
1	Xiuwei Zhang, Bernard M. E. Moret	Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach.	WABI	2008	DBLP DOI BibTeX RDF
1	Eric Tannier, Chunfang Zheng, David Sankoff	Multichromosomal Genome Median and Halving Problems.	WABI	2008	DBLP DOI BibTeX RDF
1	Rumen Andonov, Nicola Yanev, Noël Malod-Dognin	An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem.	WABI	2008	DBLP DOI BibTeX RDF	Protein structure alignment, contact map overlap, combinatorial optimization, integer programming, branch and bound, Lagrangian relaxation
1	Arthur Choi, Noah Zaitlen, Buhm Han, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin	Efficient Genome Wide Tagging by Reduction to SAT.	WABI	2008	DBLP DOI BibTeX RDF
1	Jaime I. Dávila, Sudha Balla, Sanguthevar Rajasekaran	Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data.	WABI	2007	DBLP DOI BibTeX RDF
1	Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu	The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries.	WABI	2007	DBLP DOI BibTeX RDF
1	Lucian Ilie, Silvana Ilie	Fast Computation of Good Multiple Spaced Seeds.	WABI	2007	DBLP DOI BibTeX RDF	multiple spaced seeds, string overlaps, PatternHunterII, sensitivity, BLAST, homology search
1	Eagu Kim, John D. Kececioglu	Inverse Sequence Alignment from Partial Examples.	WABI	2007	DBLP DOI BibTeX RDF
1	Loredana M. Genovese, Filippo Geraci, Marco Pellegrini 0001	A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage.	WABI	2007	DBLP DOI BibTeX RDF
1	Christina Boucher, Daniel G. Brown 0001, Paul Church	A Graph Clustering Approach to Weak Motif Recognition.	WABI	2007	DBLP DOI BibTeX RDF
1	Raffaele Giancarlo, Sridhar Hannenhalli (eds.)	Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings	WABI	2007	DBLP DOI BibTeX RDF
1	Mihaela Pertea, Steven Salzberg	Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding.	WABI	2007	DBLP DOI BibTeX RDF	Pfam, GHMM, ab intio gene finding, protein domain, profile HMM
1	Alberto Apostolico, Claudia Tagliacollo	Incremental Discovery of Irredundant Motif Bases in Time O(\|Sigma\| n2 log n).	WABI	2007	DBLP DOI BibTeX RDF
1	Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski	Locality Kernels for Protein Classification.	WABI	2007	DBLP DOI BibTeX RDF
1	Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan	Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation.	WABI	2007	DBLP DOI BibTeX RDF
1	Pavel P. Kuksa, Vladimir Pavlovic 0001	Fast Kernel Methods for SVM Sequence Classifiers.	WABI	2007	DBLP DOI BibTeX RDF
1	Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang 0002	Topology Independent Protein Structural Alignment.	WABI	2007	DBLP DOI BibTeX RDF
1	Axel Mosig, Julian J.-L. Chen, Peter F. Stadler	Homology Search with Fragmented Nucleic Acid Sequence Patterns.	WABI	2007	DBLP DOI BibTeX RDF
1	Vicky Choi, Chunfang Zheng, Qian Zhu 0002, David Sankoff	Algorithms for the Extraction of Synteny Blocks from Comparative Maps.	WABI	2007	DBLP DOI BibTeX RDF
1	Pavel A. Pevzner	Shotgun Protein Sequencing.	WABI	2007	DBLP DOI BibTeX RDF
1	Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc	Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity.	WABI	2007	DBLP DOI BibTeX RDF
1	Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi	Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data.	WABI	2007	DBLP DOI BibTeX RDF
1	Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka	Bringing Folding Pathways into Strand Pairing Prediction.	WABI	2007	DBLP DOI BibTeX RDF
1	Maja Bucan	Novel Approaches in Psychiatric Genomics.	WABI	2007	DBLP DOI BibTeX RDF
1	Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop 0004, Yinglei Zhao	HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding.	WABI	2007	DBLP DOI BibTeX RDF	Secondary Structure Prediction, Folding Pathways, Hierarchical Folding, RNA, Pseudoknot
1	Pasi Rastas, Esko Ukkonen	Haplotype Inference Via Hierarchical Genotype Parsing.	WABI	2007	DBLP DOI BibTeX RDF
1	Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno	Computability of Models for Sequence Assembly.	WABI	2007	DBLP DOI BibTeX RDF
1	Degui Zhi, Maxim Shatsky, Steven E. Brenner	Alignment-Free Local Structural Search by Writhe Decomposition.	WABI	2007	DBLP DOI BibTeX RDF
1	Chunmei Liu, Yinglei Song, Louis W. Shapiro	RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound.	WABI	2007	DBLP DOI BibTeX RDF	path decomposition, maximum weighted independent set, free energy, pseudoknot, RNA secondary structure prediction
1	Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio	Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps.	WABI	2007	DBLP DOI BibTeX RDF
1	Giuseppe Nicosia, Giovanni Stracquadanio	Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure Prediction.	WABI	2007	DBLP DOI BibTeX RDF	pattern search algorithms, protein folding, non-linear optimization
1	Phil Hyoun Lee, Hagit Shatkay	Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies.	WABI	2007	DBLP DOI BibTeX RDF
1	Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson	Seeded Tree Alignment and Planar Tanglegram Layout.	WABI	2007	DBLP DOI BibTeX RDF
1	Alexander Schliep, Roland Krause	Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach.	WABI	2007	DBLP DOI BibTeX RDF
1	Hatice Gulcin Ozer, William C. Ray	Informative Motifs in Protein Family Alignments.	WABI	2007	DBLP DOI BibTeX RDF	sequence alignment, protein structure, motif, Information content
1	Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks	A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence.	WABI	2007	DBLP DOI BibTeX RDF
1	Xueyi Wang, Jack Snoeyink	Defining and Computing Optimum RMSD for Gapped Multiple Structure Alignment.	WABI	2007	DBLP DOI BibTeX RDF	weighted RMSD, multiple structure alignment, structural conserved region, optimization
1	Roy Varshavsky, Menachem Fromer, Amit Man, Michal Linial	When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features.	WABI	2007	DBLP DOI BibTeX RDF	and Abbreviations Support Vector Machines (SVM), Olfactory Receptor, Porins protein family, Feature Selection
1	Christopher James Langmead, Sumit Kumar Jha 0001	Predicting Protein Folding Kinetics Via Temporal Logic Model Checking.	WABI	2007	DBLP DOI BibTeX RDF
1	Lenwood S. Heath, Amrita Pati	Genomic Signatures in De Bruijn Chains.	WABI	2007	DBLP DOI BibTeX RDF
1	Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu 0001, Henry van den Bedem, Jean-Claude Latombe	Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.	WABI	2007	DBLP DOI BibTeX RDF
1	Mukul S. Bansal, Oliver Eulenstein	An Omega(n2/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem.	WABI	2007	DBLP DOI BibTeX RDF
1	Hadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller	Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion.	WABI	2007	DBLP DOI BibTeX RDF	minimum evolution, genome rearrangements, recombinations, Phylogenetic network, horizontal gene transfer
1	Rastislav Srámek, Brona Brejová, Tomás Vinar	On-Line Viterbi Algorithm for Analysis of Long Biological Sequences.	WABI	2007	DBLP DOI BibTeX RDF	hidden Markov models, on-line algorithms, Viterbi algorithm, gene finding, biological sequence analysis
1	Dekel Tsur	Optimal Probing Patterns for Sequencing by Hybridization.	WABI	2006	DBLP DOI BibTeX RDF
1	Jizhen Zhao, Russell L. Malmberg, Liming Cai	Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition.	WABI	2006	DBLP DOI BibTeX RDF
1	Miklós Csürös, Ming-Te Cheng, Andreas Grimm, Amine Halawani, Perrine Landreau	Segmentation with an Isochore Distribution.	WABI	2006	DBLP DOI BibTeX RDF
1	Sven Rahmann, Gunnar W. Klau	Integer Linear Programs for Discovering Approximate Gene Clusters.	WABI	2006	DBLP DOI BibTeX RDF
1	Daniel H. Huson, Mike A. Steel, Jim Whitfield	Reducing Distortion in Phylogenetic Networks.	WABI	2006	DBLP DOI BibTeX RDF
1	Sebastian Böcker, Matthias C. Letzel, Zsuzsanna Lipták, Anton Pervukhin	Decomposing Metabolomic Isotope Patterns.	WABI	2006	DBLP DOI BibTeX RDF
1	Anne Bergeron, Julia Mixtacki, Jens Stoye	A Unifying View of Genome Rearrangements.	WABI	2006	DBLP DOI BibTeX RDF
1	Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht	Landscape Analysis for Protein-Folding Simulation in the H-P Model.	WABI	2006	DBLP DOI BibTeX RDF
1	Markus T. Friberg, Pedro Gonnet, Yves Barral, Nicol N. Schraudolph, Gaston H. Gonnet	Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms.	WABI	2006	DBLP DOI BibTeX RDF
1	Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie	Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems.	WABI	2006	DBLP DOI BibTeX RDF
1	Nikola Stojanovic, Piotr Berman	A Linear-Time Algorithm for Studying Genetic Variation.	WABI	2006	DBLP DOI BibTeX RDF

Publications at "WABI"( http://dblp.L3S.de/Venues/WABI )